PDB Chemical Component JMH

Ideal Model

Chemical Description

Name 3-Methylcytidine- 5'-monophosphate
Formula C10 H16 N3 O8 P
Formal charge 0
Molecular weight 337.223 g/mol
Component type RNA linking
Nonstandard Parent Id C

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylidene-3-methyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN1C(=N)C=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O
SMILES (CACTVS) CN1C(=N)C=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C1=O
Stereo SMILES (OpenEye) [H]/N=C\1/C=CN(C(=O)N1C)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C10H16N3O8P/c1-12-6(11)2-3-13(10(12)16)9-8(15)7(14)5(21-9)4-20-22(17,18)19/h2-3,5,7-9,11,14-15H,4H2,1H3,(H2,17,18,19)/b11-6-/t5-,7-,8-,9-/m1/s1
InChIKey descriptor ZEGVEFNYAXGPPR-MJSKEWNISA-N

Status Information

Last modified 2019-04-19
Created 2019-03-12
Release status REL
Model PDB code 6QZP
Processing site EBI