PDB Chemical Component JKM

Ideal Model

Chemical Description

Name 1-[(2S,3aS,4S,6R,6aR)-2-hydroxy-6-(hydroxymethyl)-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidine-2,4( 1H,3H)-dione
Synonyms Uridine 2',3'-cyclophosphate
Formula C9 H11 N2 O8 P
Formal charge 0
Molecular weight 306.166 g/mol
Component type NON-POLYMER

Chemical features

Atom count 31
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Bond count 33
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-[(2S,3aS,4S,6R,6aR)-2-hydroxy-6-(hydroxymethyl)-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) 1-[(2S,3aS,4S,6R,6aR)-6-(hydroxymethyl)-2-oxidanyl-2-oxidanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@@H]([C@H]2O[P](O)(=O)O[C@H]12)N3C=CC(=O)NC3=O
SMILES (CACTVS) OC[CH]1O[CH]([CH]2O[P](O)(=O)O[CH]12)N3C=CC(=O)NC3=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@@H]2[C@@H]3[C@@H]([C@H](O2)CO)O[P@@](=O)(O3)O
InChI descriptor InChI=1S/C9H11N2O8P/c12-3-4-6-7(19-20(15,16)18-6)8(17-4)11-2-1-5(13)10-9(11)14/h1-2,4,6-8,12H,3H2,(H,15,16)(H,10,13,14)/t4-,6-,7+,8+/m1/s1
InChIKey descriptor HWDMHJDYMFRXOX-GVYWOMJSSA-N

Status Information

Last modified 2020-06-17
Created 2012-02-24
Release status REL
Model PDB code 4DVL
Processing site RCSB