PDB Chemical Component JKJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JKJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C01 |
O02 |
1.443 |
1.429 |
| O02 |
C03 |
1.450 |
1.429 |
| O15 |
S13 |
1.414 |
1.421 |
| C03 |
C04 |
1.549 |
1.530 |
| C12 |
C11 |
1.553 |
1.528 |
| C12 |
C06 |
1.558 |
1.534 |
| S13 |
N05 |
1.722 |
1.656 |
| S13 |
O14 |
1.423 |
1.421 |
| S13 |
C16 |
1.735 |
1.814 |
| C11 |
C09 |
1.547 |
1.531 |
| N05 |
C04 |
1.555 |
1.477 |
| N05 |
C06 |
1.495 |
1.477 |
| C04 |
C09 |
1.598 |
1.537 |
| C06 |
C07 |
1.548 |
1.533 |
| C09 |
O10 |
1.447 |
1.429 |
| C09 |
C08 |
1.536 |
1.531 |
| C07 |
C08 |
1.534 |
1.529 |
| C01 |
H013 |
1.100 |
1.089 |
| C01 |
H011 |
1.100 |
1.090 |
| C01 |
H012 |
1.100 |
1.090 |
| C03 |
H031 |
1.100 |
1.090 |
| C03 |
H032 |
1.100 |
1.090 |
| C04 |
H041 |
1.100 |
1.090 |
| C06 |
H061 |
1.100 |
1.090 |
| C07 |
H072 |
1.100 |
1.090 |
| C07 |
H071 |
1.100 |
1.089 |
| C08 |
H082 |
1.100 |
1.090 |
| C08 |
H081 |
1.100 |
1.090 |
| O10 |
H101 |
0.950 |
0.968 |
| C11 |
H112 |
1.100 |
1.090 |
| C11 |
H111 |
1.099 |
1.090 |
| C12 |
H122 |
1.100 |
1.090 |
| C12 |
H121 |
1.100 |
1.090 |
| C16 |
H162 |
1.100 |
1.089 |
| C16 |
H163 |
1.100 |
1.090 |
| C16 |
H161 |
1.100 |
1.090 |
Bond Angles for JKJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C01 |
O02 |
C03 |
113.6 |
114.0 |
| O02 |
C01 |
H013 |
109.5 |
109.5 |
| O02 |
C01 |
H011 |
109.5 |
109.5 |
| O02 |
C01 |
H012 |
109.4 |
109.4 |
| O02 |
C03 |
C04 |
104.3 |
109.5 |
| O02 |
C03 |
H031 |
110.8 |
109.4 |
| O02 |
C03 |
H032 |
110.7 |
109.4 |
| O15 |
S13 |
C16 |
108.5 |
110.6 |
| C03 |
C04 |
C09 |
108.3 |
110.0 |
| C04 |
C03 |
H031 |
110.8 |
109.5 |
| C04 |
C03 |
H032 |
110.8 |
109.5 |
| C03 |
C04 |
H041 |
109.4 |
109.9 |
| C12 |
C11 |
H112 |
109.4 |
109.5 |
| C12 |
C11 |
H111 |
109.4 |
109.3 |
| C12 |
C06 |
H061 |
110.9 |
111.0 |
| O14 |
S13 |
C16 |
108.2 |
110.6 |
| S13 |
C16 |
H162 |
109.5 |
109.5 |
| S13 |
C16 |
H163 |
109.5 |
109.4 |
| S13 |
C16 |
H161 |
109.5 |
109.5 |
| N05 |
C04 |
C09 |
111.5 |
106.7 |
| N05 |
C04 |
H041 |
109.4 |
110.1 |
| N05 |
C06 |
C07 |
110.1 |
108.0 |
| N05 |
C06 |
H061 |
111.8 |
110.5 |
| C04 |
C09 |
O10 |
109.7 |
109.6 |
| C04 |
C09 |
C08 |
109.8 |
109.0 |
| C09 |
C04 |
H041 |
108.8 |
110.0 |
| C06 |
C07 |
C08 |
112.8 |
109.6 |
| C07 |
C06 |
H061 |
111.0 |
110.6 |
| C06 |
C07 |
H072 |
108.6 |
109.5 |
| C06 |
C07 |
H071 |
108.6 |
109.4 |
| C09 |
O10 |
H101 |
109.5 |
113.9 |
| C09 |
C08 |
H082 |
109.2 |
109.4 |
| C09 |
C08 |
H081 |
109.2 |
109.3 |
| C08 |
C07 |
H072 |
108.6 |
109.5 |
| C08 |
C07 |
H071 |
108.7 |
109.5 |
| C07 |
C08 |
H082 |
109.2 |
109.4 |
| C07 |
C08 |
H081 |
109.2 |
109.4 |
| H013 |
C01 |
H011 |
109.5 |
109.5 |
| H013 |
C01 |
H012 |
109.5 |
109.5 |
| H011 |
C01 |
H012 |
109.5 |
109.5 |
| H031 |
C03 |
H032 |
109.5 |
109.5 |
| H072 |
C07 |
H071 |
109.5 |
109.4 |
| H082 |
C08 |
H081 |
109.5 |
109.4 |
| H112 |
C11 |
H111 |
109.5 |
109.4 |
| H122 |
C12 |
H121 |
109.5 |
109.4 |
| H162 |
C16 |
H163 |
109.4 |
109.5 |
| H162 |
C16 |
H161 |
109.5 |
109.5 |
| H163 |
C16 |
H161 |
109.4 |
109.5 |
Torsion Angles for JKJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C01 |
O02 |
C03 |
C04 |
182.1 |
180.0 |
| C01 |
O02 |
C03 |
H031 |
301.3 |
300.0 |
| C01 |
O02 |
C03 |
H032 |
62.9 |
60.0 |
| H013 |
C01 |
O02 |
H011 |
240.0 |
240.0 |
| H013 |
C01 |
O02 |
H012 |
120.0 |
120.0 |
| H011 |
C01 |
O02 |
H012 |
240.0 |
240.0 |
| C03 |
O02 |
C01 |
H013 |
180.0 |
300.0 |
| C03 |
O02 |
C01 |
H011 |
300.0 |
60.0 |
| C03 |
O02 |
C01 |
H012 |
60.0 |
180.0 |
| O02 |
C03 |
C04 |
C09 |
173.2 |
185.0 |
| C04 |
C03 |
O02 |
H031 |
240.8 |
240.0 |
| C04 |
C03 |
O02 |
H032 |
119.2 |
120.0 |
| O02 |
C03 |
C04 |
H041 |
291.8 |
306.3 |
| H031 |
C03 |
O02 |
H032 |
238.3 |
240.1 |
| O14 |
S13 |
O15 |
C16 |
119.4 |
228.4 |
| O15 |
S13 |
C16 |
H162 |
180.0 |
171.6 |
| O15 |
S13 |
C16 |
H163 |
300.0 |
291.6 |
| O15 |
S13 |
C16 |
H161 |
60.0 |
51.6 |
| O02 |
C03 |
C04 |
H031 |
119.2 |
120.0 |
| O02 |
C03 |
C04 |
H032 |
240.9 |
240.0 |
| N05 |
C04 |
C03 |
C09 |
238.3 |
242.7 |
| N05 |
C04 |
C03 |
H041 |
119.8 |
121.4 |
| C03 |
C04 |
C09 |
O10 |
65.1 |
60.3 |
| C03 |
C04 |
C09 |
C08 |
187.8 |
181.2 |
| C09 |
C04 |
C03 |
H041 |
241.5 |
238.7 |
| H031 |
C03 |
C04 |
H032 |
121.7 |
120.0 |
| C11 |
C12 |
C06 |
H061 |
184.2 |
177.8 |
| H112 |
C11 |
C12 |
H111 |
240.0 |
119.8 |
| N05 |
C06 |
C12 |
H061 |
236.5 |
238.7 |
| C07 |
C06 |
C12 |
H061 |
119.3 |
121.8 |
| C12 |
C06 |
C07 |
H072 |
180.9 |
180.5 |
| C12 |
C06 |
C07 |
H071 |
299.9 |
300.4 |
| S13 |
N05 |
C04 |
H041 |
39.4 |
60.6 |
| S13 |
N05 |
C06 |
H061 |
18.8 |
359.7 |
| O15 |
S13 |
O14 |
C16 |
240.4 |
131.6 |
| O14 |
S13 |
C16 |
H162 |
58.3 |
308.4 |
| O14 |
S13 |
C16 |
H163 |
178.3 |
68.4 |
| O14 |
S13 |
C16 |
H161 |
298.3 |
188.4 |
| H162 |
C16 |
S13 |
H163 |
240.0 |
240.0 |
| H162 |
C16 |
S13 |
H161 |
120.1 |
120.0 |
| H163 |
C16 |
S13 |
H161 |
240.0 |
240.0 |
| C11 |
C09 |
C04 |
H041 |
183.3 |
179.0 |
| C11 |
C09 |
O10 |
H101 |
180.0 |
299.6 |
| C11 |
C09 |
C08 |
H082 |
61.7 |
180.8 |
| C11 |
C09 |
C08 |
H081 |
181.4 |
61.1 |
| C03 |
C04 |
N05 |
C09 |
119.8 |
119.3 |
| N05 |
C04 |
C03 |
H031 |
292.4 |
307.7 |
| N05 |
C04 |
C03 |
H032 |
170.7 |
187.7 |
| C03 |
C04 |
N05 |
H041 |
240.2 |
238.7 |
| N05 |
C04 |
C09 |
O10 |
185.5 |
179.6 |
| N05 |
C04 |
C09 |
C08 |
308.2 |
300.5 |
| C09 |
C04 |
N05 |
H041 |
120.4 |
119.4 |
| C12 |
C06 |
N05 |
H061 |
122.9 |
121.6 |
| C06 |
N05 |
C04 |
C09 |
353.7 |
360.0 |
| C06 |
N05 |
C04 |
H041 |
233.3 |
240.6 |
| N05 |
C06 |
C07 |
C08 |
303.9 |
303.5 |
| C07 |
C06 |
N05 |
H061 |
236.2 |
239.0 |
| N05 |
C06 |
C07 |
H072 |
64.3 |
63.6 |
| N05 |
C06 |
C07 |
H071 |
183.3 |
183.5 |
| C09 |
C04 |
C03 |
H031 |
54.0 |
65.0 |
| C09 |
C04 |
C03 |
H032 |
292.4 |
305.0 |
| C03 |
C04 |
C09 |
H041 |
118.9 |
121.2 |
| N05 |
C04 |
C09 |
H041 |
239.3 |
240.5 |
| C04 |
C09 |
O10 |
H101 |
61.6 |
180.0 |
| C04 |
C09 |
C08 |
H082 |
176.0 |
299.7 |
| C04 |
C09 |
C08 |
H081 |
295.7 |
180.0 |
| C12 |
C06 |
C07 |
H061 |
240.8 |
237.9 |
| N05 |
C06 |
C07 |
H061 |
124.3 |
121.0 |
| C08 |
C07 |
C06 |
H072 |
239.5 |
239.9 |
| C08 |
C07 |
C06 |
H071 |
120.5 |
120.0 |
| C06 |
C07 |
C08 |
H082 |
236.3 |
119.5 |
| C06 |
C07 |
C08 |
H081 |
116.6 |
239.3 |
| H072 |
C07 |
C06 |
H071 |
241.0 |
240.1 |
| C04 |
C09 |
O10 |
C08 |
121.7 |
120.0 |
| O10 |
C09 |
C04 |
H041 |
306.2 |
299.1 |
| O10 |
C09 |
C08 |
H082 |
297.7 |
60.1 |
| O10 |
C09 |
C08 |
H081 |
57.4 |
300.5 |
| C04 |
C09 |
C08 |
O10 |
238.3 |
239.6 |
| C08 |
C09 |
C04 |
H041 |
68.9 |
59.9 |
| C09 |
C08 |
C07 |
H072 |
235.9 |
239.3 |
| C09 |
C08 |
C07 |
H071 |
117.0 |
119.4 |
| C07 |
C08 |
C09 |
H082 |
239.9 |
120.2 |
| C07 |
C08 |
C09 |
H081 |
120.2 |
239.9 |
| H082 |
C08 |
C09 |
H081 |
240.3 |
119.7 |
| C04 |
C09 |
C08 |
C07 |
55.9 |
59.9 |
| C08 |
C07 |
C06 |
H061 |
179.6 |
182.5 |
| C06 |
C07 |
C08 |
H072 |
120.5 |
120.0 |
| C06 |
C07 |
C08 |
H071 |
239.5 |
240.0 |
| C09 |
C08 |
C07 |
H082 |
120.2 |
239.8 |
| C09 |
C08 |
C07 |
H081 |
239.8 |
120.0 |
| H072 |
C07 |
C08 |
H071 |
119.0 |
119.9 |
| H082 |
C08 |
C07 |
H081 |
119.6 |
240.2 |
| H013 |
C01 |
O02 |
C03 |
180.0 |
300.0 |
| O02 |
C01 |
H013 |
H011 |
120.0 |
120.0 |
| O02 |
C01 |
H013 |
H012 |
240.0 |
240.0 |
| H011 |
C01 |
H013 |
H012 |
120.0 |
120.0 |
| H011 |
C01 |
O02 |
C03 |
300.0 |
60.0 |
| O02 |
C01 |
H011 |
H013 |
240.0 |
239.9 |
| O02 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
| H013 |
C01 |
H011 |
H012 |
240.0 |
240.0 |
| H012 |
C01 |
O02 |
C03 |
60.0 |
180.0 |
| O02 |
C01 |
H012 |
H013 |
120.0 |
120.0 |
| O02 |
C01 |
H012 |
H011 |
240.0 |
240.0 |
| H013 |
C01 |
H012 |
H011 |
120.0 |
120.0 |
| O02 |
C03 |
H031 |
C04 |
244.8 |
240.0 |
| O02 |
C03 |
H031 |
H032 |
122.4 |
119.9 |
| H031 |
C03 |
C04 |
C09 |
54.0 |
65.0 |
| C04 |
C03 |
H031 |
H032 |
237.6 |
240.0 |
| H031 |
C03 |
C04 |
H041 |
172.6 |
186.3 |
| O02 |
C03 |
H032 |
C04 |
115.2 |
120.0 |
| O02 |
C03 |
H032 |
H031 |
237.6 |
240.1 |
| H032 |
C03 |
C04 |
C09 |
292.4 |
305.0 |
| C04 |
C03 |
H032 |
H031 |
122.4 |
120.0 |
| H032 |
C03 |
C04 |
H041 |
50.9 |
66.3 |
| C03 |
C04 |
H041 |
C09 |
241.8 |
238.7 |
| H041 |
C04 |
C03 |
H031 |
172.6 |
186.3 |
| H041 |
C04 |
C03 |
H032 |
50.9 |
66.3 |
| N05 |
C04 |
H041 |
C09 |
122.0 |
117.4 |
| H041 |
C04 |
C09 |
O10 |
306.2 |
299.1 |
| H041 |
C04 |
C09 |
C08 |
68.9 |
59.9 |
| N05 |
C06 |
H061 |
C07 |
236.7 |
240.5 |
| H061 |
C06 |
C07 |
C08 |
179.6 |
182.5 |
| H061 |
C06 |
C07 |
H072 |
300.0 |
302.6 |
| H061 |
C06 |
C07 |
H071 |
59.0 |
62.5 |
| C06 |
C07 |
H072 |
C08 |
236.9 |
239.9 |
| H072 |
C07 |
C06 |
H061 |
300.0 |
302.6 |
| C06 |
C07 |
H072 |
H071 |
118.5 |
119.9 |
| C08 |
C07 |
H072 |
H071 |
241.5 |
240.0 |
| H072 |
C07 |
C08 |
H082 |
115.8 |
359.5 |
| H072 |
C07 |
C08 |
H081 |
356.1 |
119.3 |
| C06 |
C07 |
H071 |
C08 |
123.1 |
120.1 |
| H071 |
C07 |
C06 |
H061 |
59.0 |
62.5 |
| C06 |
C07 |
H071 |
H072 |
241.5 |
240.1 |
| C08 |
C07 |
H071 |
H072 |
118.5 |
120.0 |
| H071 |
C07 |
C08 |
H082 |
356.8 |
239.5 |
| H071 |
C07 |
C08 |
H081 |
237.1 |
359.3 |
| C09 |
C08 |
H082 |
H081 |
119.5 |
240.4 |
| H082 |
C08 |
C07 |
H072 |
115.8 |
359.5 |
| H082 |
C08 |
C07 |
H071 |
356.8 |
239.5 |
| C07 |
C08 |
H082 |
H081 |
240.5 |
119.8 |
| C09 |
C08 |
H081 |
H082 |
240.5 |
119.7 |
| H081 |
C08 |
C07 |
H072 |
356.1 |
119.3 |
| H081 |
C08 |
C07 |
H071 |
237.1 |
359.3 |
| C07 |
C08 |
H081 |
H082 |
119.5 |
240.2 |
| C12 |
C11 |
H112 |
H111 |
119.9 |
240.3 |
| C12 |
C11 |
H111 |
H112 |
240.1 |
119.8 |
| H122 |
C12 |
C11 |
H112 |
237.8 |
120.5 |
| H122 |
C12 |
C11 |
H111 |
357.7 |
0.6 |
| H122 |
C12 |
C06 |
H061 |
63.8 |
297.8 |
| H121 |
C12 |
C11 |
H112 |
356.8 |
0.5 |
| H121 |
C12 |
C11 |
H111 |
116.8 |
240.7 |
| H121 |
C12 |
C06 |
H061 |
304.7 |
57.7 |
| S13 |
C16 |
H162 |
H163 |
120.0 |
120.0 |
| S13 |
C16 |
H162 |
H161 |
240.0 |
240.0 |
| H163 |
C16 |
H162 |
H161 |
120.0 |
120.0 |
| S13 |
C16 |
H163 |
H162 |
240.0 |
240.0 |
| S13 |
C16 |
H163 |
H161 |
120.0 |
120.0 |
| H162 |
C16 |
H163 |
H161 |
240.0 |
240.0 |
| S13 |
C16 |
H161 |
H162 |
120.1 |
120.0 |
| S13 |
C16 |
H161 |
H163 |
240.0 |
240.0 |
| H162 |
C16 |
H161 |
H163 |
120.0 |
120.0 |