PDB Chemical Component JKA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JKA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O04 |
S02 |
1.426 |
1.421 |
C06 |
N05 |
1.544 |
1.465 |
C06 |
C07 |
1.527 |
1.524 |
N05 |
S02 |
1.691 |
1.664 |
N05 |
C11 |
1.513 |
1.468 |
S02 |
O03 |
1.420 |
1.421 |
S02 |
C01 |
1.702 |
1.813 |
C13 |
C12 |
1.505 |
1.523 |
C13 |
C14 |
1.595 |
1.522 |
O15 |
C14 |
1.378 |
1.429 |
C12 |
C11 |
1.545 |
1.526 |
O08 |
C07 |
1.419 |
1.429 |
C07 |
C09 |
1.558 |
1.520 |
C14 |
C09 |
1.584 |
1.519 |
C11 |
C10 |
1.494 |
1.530 |
C09 |
C10 |
1.534 |
1.533 |
C10 |
H101 |
1.100 |
1.089 |
C10 |
H102 |
1.100 |
1.088 |
C13 |
H131 |
1.100 |
1.105 |
C13 |
H132 |
1.100 |
1.085 |
C01 |
H011 |
1.100 |
1.089 |
C01 |
H012 |
1.100 |
1.090 |
C01 |
H013 |
1.100 |
1.090 |
C06 |
H062 |
1.100 |
1.085 |
C06 |
H061 |
1.100 |
1.105 |
C07 |
H071 |
1.100 |
1.102 |
O08 |
H081 |
0.950 |
0.967 |
C09 |
H091 |
1.100 |
1.101 |
C11 |
H111 |
1.100 |
1.099 |
C12 |
H122 |
1.101 |
1.095 |
C12 |
H121 |
1.100 |
1.095 |
C14 |
H141 |
1.100 |
1.103 |
O15 |
H151 |
0.950 |
0.968 |
Bond Angles for JKA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C06 |
N05 |
C11 |
112.7 |
120.7 |
C06 |
C07 |
C09 |
109.7 |
112.5 |
C07 |
C06 |
H062 |
109.1 |
111.0 |
C07 |
C06 |
H061 |
109.1 |
108.2 |
C06 |
C07 |
H071 |
109.7 |
108.1 |
N05 |
C11 |
H111 |
107.6 |
109.2 |
S02 |
C01 |
H011 |
109.5 |
109.5 |
S02 |
C01 |
H012 |
109.5 |
109.5 |
S02 |
C01 |
H013 |
109.4 |
109.5 |
C12 |
C13 |
C14 |
123.7 |
112.1 |
C13 |
C12 |
C11 |
111.6 |
111.4 |
C12 |
C13 |
H131 |
105.8 |
108.0 |
C12 |
C13 |
H132 |
105.8 |
110.9 |
C13 |
C12 |
H122 |
109.0 |
109.3 |
C13 |
C12 |
H121 |
108.9 |
109.4 |
C13 |
C14 |
C09 |
110.2 |
112.9 |
C14 |
C13 |
H131 |
105.8 |
108.0 |
C14 |
C13 |
H132 |
105.8 |
111.1 |
C13 |
C14 |
H141 |
106.2 |
108.1 |
O15 |
C14 |
H141 |
108.9 |
107.4 |
C12 |
C11 |
H111 |
107.3 |
109.5 |
O08 |
C07 |
C09 |
104.6 |
110.5 |
O08 |
C07 |
H071 |
111.2 |
107.5 |
C09 |
C07 |
H071 |
109.3 |
108.2 |
C07 |
C09 |
H091 |
108.6 |
108.1 |
C14 |
C09 |
H091 |
108.3 |
108.2 |
C11 |
C10 |
H101 |
109.8 |
109.9 |
C11 |
C10 |
H102 |
109.8 |
110.0 |
C09 |
C10 |
H101 |
109.8 |
109.5 |
C09 |
C10 |
H102 |
109.8 |
109.5 |
H101 |
C10 |
H102 |
109.5 |
109.9 |
H131 |
C13 |
H132 |
109.5 |
106.7 |
H011 |
C01 |
H012 |
109.5 |
109.4 |
H011 |
C01 |
H013 |
109.5 |
109.5 |
H012 |
C01 |
H013 |
109.5 |
109.4 |
H062 |
C06 |
H061 |
109.5 |
106.7 |
H122 |
C12 |
H121 |
109.4 |
108.0 |
Torsion Angles for JKA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O04 |
S02 |
C01 |
H011 |
180.0 |
188.4 |
O04 |
S02 |
C01 |
H012 |
300.0 |
308.4 |
O04 |
S02 |
C01 |
H013 |
60.0 |
68.4 |
C06 |
N05 |
C11 |
H111 |
171.6 |
168.5 |
C07 |
C06 |
N05 |
C11 |
310.0 |
318.3 |
O08 |
C07 |
C06 |
C09 |
115.8 |
123.5 |
O08 |
C07 |
C06 |
H071 |
235.8 |
242.9 |
C09 |
C07 |
C06 |
H071 |
120.0 |
119.4 |
C06 |
C07 |
C09 |
H091 |
180.1 |
186.0 |
H062 |
C06 |
C07 |
H061 |
119.6 |
116.8 |
N05 |
S02 |
C01 |
H011 |
295.5 |
300.0 |
N05 |
S02 |
C01 |
H012 |
55.5 |
60.0 |
N05 |
S02 |
C01 |
H013 |
175.5 |
180.0 |
C13 |
C12 |
C11 |
N05 |
77.2 |
61.7 |
C12 |
C11 |
N05 |
H111 |
114.8 |
120.4 |
N05 |
C11 |
C10 |
H101 |
69.8 |
183.2 |
N05 |
C11 |
C10 |
H102 |
190.2 |
62.1 |
O03 |
S02 |
C01 |
H011 |
47.9 |
51.6 |
O03 |
S02 |
C01 |
H012 |
167.9 |
171.6 |
O03 |
S02 |
C01 |
H013 |
287.9 |
291.6 |
H011 |
C01 |
S02 |
H012 |
240.0 |
240.0 |
H011 |
C01 |
S02 |
H013 |
120.0 |
120.0 |
H012 |
C01 |
S02 |
H013 |
240.0 |
240.0 |
C12 |
C13 |
C14 |
C09 |
340.9 |
309.9 |
C14 |
C13 |
C12 |
H131 |
238.1 |
241.2 |
C14 |
C13 |
C12 |
H132 |
121.9 |
124.7 |
C12 |
C13 |
C14 |
H141 |
95.8 |
69.5 |
C13 |
C12 |
C11 |
H111 |
192.2 |
181.9 |
H131 |
C13 |
C12 |
H132 |
243.9 |
243.5 |
H122 |
C12 |
C13 |
H121 |
240.7 |
241.9 |
C14 |
C13 |
C12 |
C11 |
25.9 |
51.2 |
C12 |
C13 |
C14 |
H131 |
121.9 |
118.8 |
C12 |
C13 |
C14 |
H132 |
238.1 |
235.4 |
C14 |
C13 |
C12 |
H122 |
146.2 |
172.1 |
C14 |
C13 |
C12 |
H121 |
265.6 |
290.3 |
O15 |
C14 |
C13 |
H141 |
118.2 |
116.8 |
C13 |
C14 |
C09 |
H091 |
156.8 |
172.6 |
H131 |
C13 |
C14 |
H132 |
116.1 |
116.6 |
O15 |
C14 |
C13 |
H131 |
92.1 |
67.6 |
O15 |
C14 |
C13 |
H132 |
335.9 |
310.9 |
C13 |
C14 |
O15 |
H141 |
243.4 |
242.7 |
O15 |
C14 |
C09 |
H091 |
282.2 |
295.8 |
N05 |
C11 |
C12 |
H111 |
245.0 |
239.8 |
C11 |
C12 |
C13 |
C14 |
25.9 |
51.2 |
C11 |
C12 |
C13 |
H131 |
147.8 |
170.0 |
C11 |
C12 |
C13 |
H132 |
264.0 |
286.5 |
C13 |
C12 |
C11 |
H122 |
120.3 |
120.9 |
C13 |
C12 |
C11 |
H121 |
239.7 |
239.0 |
C12 |
C11 |
C10 |
H101 |
191.4 |
304.0 |
C12 |
C11 |
C10 |
H102 |
311.8 |
182.9 |
C06 |
C07 |
O08 |
C09 |
241.1 |
235.4 |
O08 |
C07 |
C06 |
H062 |
49.6 |
42.7 |
O08 |
C07 |
C06 |
H061 |
290.1 |
285.9 |
C06 |
C07 |
O08 |
H071 |
123.3 |
117.5 |
C09 |
C07 |
O08 |
H071 |
242.1 |
242.1 |
O08 |
C07 |
C09 |
H091 |
59.6 |
62.9 |
C09 |
C07 |
C06 |
H062 |
293.8 |
279.2 |
C09 |
C07 |
C06 |
H061 |
174.3 |
162.4 |
C06 |
C07 |
C09 |
H071 |
239.7 |
240.6 |
C13 |
C14 |
C09 |
C07 |
272.6 |
292.6 |
O08 |
C07 |
C09 |
H071 |
119.2 |
117.5 |
C14 |
C09 |
C07 |
H091 |
244.5 |
240.0 |
C07 |
C09 |
C10 |
H101 |
294.2 |
183.3 |
C07 |
C09 |
C10 |
H102 |
173.8 |
303.8 |
C09 |
C14 |
C13 |
H131 |
219.0 |
191.1 |
C09 |
C14 |
C13 |
H132 |
102.9 |
74.5 |
C13 |
C14 |
C09 |
H141 |
114.8 |
119.6 |
C14 |
C09 |
C07 |
H071 |
184.9 |
185.3 |
C07 |
C09 |
C14 |
H091 |
115.7 |
120.0 |
C14 |
C09 |
C10 |
H101 |
175.6 |
58.0 |
C14 |
C09 |
C10 |
H102 |
55.2 |
178.6 |
C09 |
C10 |
C11 |
H101 |
240.2 |
119.4 |
C09 |
C10 |
C11 |
H102 |
119.8 |
240.5 |
H101 |
C10 |
C11 |
H102 |
239.6 |
121.1 |
C11 |
C10 |
C09 |
H101 |
119.8 |
240.3 |
C11 |
C10 |
C09 |
H102 |
240.2 |
119.8 |
H101 |
C10 |
C09 |
H102 |
120.4 |
239.5 |
C11 |
C10 |
H101 |
H102 |
120.6 |
238.9 |
C09 |
C10 |
H101 |
H102 |
239.4 |
120.3 |
C11 |
C10 |
H102 |
H101 |
239.4 |
121.1 |
C09 |
C10 |
H102 |
H101 |
120.6 |
239.7 |
C12 |
C13 |
H131 |
C14 |
227.2 |
238.7 |
H131 |
C13 |
C12 |
C11 |
147.8 |
170.0 |
C12 |
C13 |
H131 |
H132 |
113.6 |
119.2 |
H131 |
C13 |
C12 |
H122 |
268.2 |
290.9 |
H131 |
C13 |
C12 |
H121 |
27.5 |
49.0 |
H131 |
C13 |
C14 |
C09 |
219.0 |
191.1 |
C14 |
C13 |
H131 |
H132 |
246.4 |
240.5 |
H131 |
C13 |
C14 |
H141 |
333.9 |
310.7 |
C12 |
C13 |
H132 |
C14 |
132.8 |
125.3 |
H132 |
C13 |
C12 |
C11 |
264.0 |
286.5 |
C12 |
C13 |
H132 |
H131 |
246.4 |
242.7 |
H132 |
C13 |
C12 |
H122 |
24.3 |
47.4 |
H132 |
C13 |
C12 |
H121 |
143.6 |
165.5 |
H132 |
C13 |
C14 |
C09 |
102.9 |
74.5 |
C14 |
C13 |
H132 |
H131 |
113.6 |
117.4 |
H132 |
C13 |
C14 |
H141 |
217.7 |
194.1 |
S02 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
S02 |
C01 |
H011 |
H013 |
240.0 |
239.9 |
H012 |
C01 |
H011 |
H013 |
120.0 |
119.9 |
S02 |
C01 |
H012 |
H011 |
239.9 |
240.0 |
S02 |
C01 |
H012 |
H013 |
120.0 |
120.0 |
H011 |
C01 |
H012 |
H013 |
240.0 |
240.1 |
S02 |
C01 |
H013 |
H011 |
120.1 |
120.1 |
S02 |
C01 |
H013 |
H012 |
240.0 |
240.0 |
H011 |
C01 |
H013 |
H012 |
120.0 |
119.9 |
H062 |
C06 |
N05 |
C11 |
70.2 |
82.8 |
H062 |
C06 |
C07 |
C09 |
293.8 |
279.2 |
C07 |
C06 |
H062 |
H061 |
240.7 |
242.3 |
H062 |
C06 |
C07 |
H071 |
173.8 |
159.8 |
H061 |
C06 |
N05 |
C11 |
189.8 |
199.5 |
H061 |
C06 |
C07 |
C09 |
174.3 |
162.4 |
C07 |
C06 |
H061 |
H062 |
119.3 |
119.5 |
H061 |
C06 |
C07 |
H071 |
54.2 |
43.0 |
C06 |
C07 |
H071 |
C09 |
120.3 |
122.1 |
H071 |
C07 |
C06 |
H062 |
173.8 |
159.8 |
H071 |
C07 |
C06 |
H061 |
54.2 |
43.0 |
O08 |
C07 |
H071 |
C09 |
245.0 |
240.6 |
H071 |
C07 |
C09 |
H091 |
300.4 |
305.4 |
H081 |
O08 |
C07 |
C09 |
298.9 |
184.6 |
H081 |
O08 |
C07 |
H071 |
56.7 |
302.6 |
H091 |
C09 |
C07 |
H071 |
300.4 |
305.4 |
H091 |
C09 |
C10 |
H101 |
55.6 |
300.6 |
H091 |
C09 |
C10 |
H102 |
295.2 |
61.1 |
H111 |
C11 |
C10 |
H101 |
308.1 |
63.8 |
H111 |
C11 |
C10 |
H102 |
68.5 |
302.7 |
H122 |
C12 |
C13 |
C14 |
146.2 |
172.1 |
C13 |
C12 |
H122 |
C11 |
238.0 |
237.8 |
H122 |
C12 |
C13 |
H131 |
268.2 |
290.9 |
H122 |
C12 |
C13 |
H132 |
24.3 |
47.4 |
C13 |
C12 |
H122 |
H121 |
119.0 |
119.0 |
H122 |
C12 |
C11 |
H111 |
71.9 |
60.9 |
H121 |
C12 |
C13 |
C14 |
265.6 |
290.3 |
C13 |
C12 |
H121 |
C11 |
122.0 |
122.3 |
H121 |
C12 |
C13 |
H131 |
27.5 |
49.0 |
H121 |
C12 |
C13 |
H132 |
143.6 |
165.5 |
C13 |
C12 |
H121 |
H122 |
241.0 |
241.1 |
H121 |
C12 |
C11 |
H111 |
312.6 |
302.9 |
C13 |
C14 |
H141 |
C09 |
242.5 |
237.5 |
H141 |
C14 |
C13 |
H131 |
333.9 |
310.7 |
H141 |
C14 |
C13 |
H132 |
217.7 |
194.1 |
H141 |
C14 |
C09 |
H091 |
42.1 |
53.0 |
H151 |
O15 |
C14 |
H141 |
296.6 |
57.3 |