PDB Chemical Component JJY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JJY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
C11 |
1.452 |
1.535 |
| C10 |
C09 |
1.524 |
1.525 |
| C11 |
C12 |
1.540 |
1.515 |
| O13 |
C12 |
1.185 |
1.213 |
| C12 |
C14 |
1.578 |
1.474 |
| C09 |
C08 |
1.493 |
1.507 |
| C14 |
C08 |
1.360 |
1.397 |
| C14 |
C15 |
1.362 |
1.398 |
| C08 |
N07 |
1.326 |
1.321 |
| N07 |
C06 |
1.240 |
1.321 |
| C15 |
C16 |
1.348 |
1.398 |
| C06 |
C16 |
1.344 |
1.397 |
| C06 |
C05 |
1.428 |
1.507 |
| C16 |
C02 |
1.448 |
1.474 |
| C05 |
C04 |
1.472 |
1.526 |
| C02 |
O01 |
1.177 |
1.212 |
| C02 |
C03 |
1.560 |
1.515 |
| C03 |
C04 |
1.454 |
1.535 |
| C10 |
H102 |
1.100 |
1.089 |
| C10 |
H101 |
1.100 |
1.090 |
| C15 |
H151 |
1.080 |
1.080 |
| C03 |
H032 |
1.100 |
1.090 |
| C03 |
H031 |
1.100 |
1.090 |
| C04 |
H042 |
1.100 |
1.089 |
| C04 |
H041 |
1.100 |
1.091 |
| C05 |
H052 |
1.100 |
1.090 |
| C05 |
H051 |
1.100 |
1.090 |
| C09 |
H091 |
1.100 |
1.091 |
| C09 |
H092 |
1.100 |
1.090 |
| C11 |
H111 |
1.100 |
1.090 |
| C11 |
H112 |
1.100 |
1.090 |
Bond Angles for JJY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C09 |
C10 |
C11 |
109.6 |
109.4 |
| C10 |
C11 |
C12 |
108.6 |
107.3 |
| C11 |
C10 |
H102 |
109.4 |
109.5 |
| C11 |
C10 |
H101 |
109.4 |
109.5 |
| C10 |
C11 |
H111 |
109.7 |
109.9 |
| C10 |
C11 |
H112 |
109.7 |
109.8 |
| C10 |
C09 |
C08 |
113.4 |
111.3 |
| C09 |
C10 |
H102 |
109.5 |
109.5 |
| C09 |
C10 |
H101 |
109.4 |
109.5 |
| C10 |
C09 |
H091 |
108.5 |
109.1 |
| C10 |
C09 |
H092 |
108.5 |
109.2 |
| C11 |
C12 |
C14 |
116.7 |
117.6 |
| C12 |
C11 |
H111 |
109.7 |
109.9 |
| C12 |
C11 |
H112 |
109.7 |
109.9 |
| O13 |
C12 |
C14 |
126.7 |
121.2 |
| C14 |
C15 |
C16 |
119.9 |
117.9 |
| C14 |
C15 |
H151 |
120.0 |
121.0 |
| N07 |
C06 |
C16 |
119.3 |
120.0 |
| C15 |
C16 |
C06 |
120.5 |
119.5 |
| C15 |
C16 |
C02 |
119.4 |
119.9 |
| C16 |
C15 |
H151 |
120.0 |
121.0 |
| C06 |
C05 |
H052 |
107.6 |
109.1 |
| C06 |
C05 |
H051 |
107.6 |
109.0 |
| C05 |
C04 |
H042 |
109.0 |
109.5 |
| C05 |
C04 |
H041 |
109.0 |
109.4 |
| C02 |
C03 |
C04 |
110.5 |
107.3 |
| C02 |
C03 |
H032 |
109.3 |
109.9 |
| C02 |
C03 |
H031 |
109.2 |
109.9 |
| C04 |
C03 |
H032 |
109.2 |
109.9 |
| C04 |
C03 |
H031 |
109.3 |
109.9 |
| C03 |
C04 |
H042 |
109.0 |
109.5 |
| C03 |
C04 |
H041 |
109.0 |
109.4 |
| H102 |
C10 |
H101 |
109.5 |
109.5 |
| H032 |
C03 |
H031 |
109.4 |
110.0 |
| H042 |
C04 |
H041 |
109.4 |
109.5 |
| H052 |
C05 |
H051 |
109.5 |
109.2 |
| H091 |
C09 |
H092 |
109.5 |
109.0 |
| H111 |
C11 |
H112 |
109.4 |
110.0 |
Torsion Angles for JJY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C09 |
C08 |
297.1 |
55.0 |
| C09 |
C10 |
C11 |
H102 |
240.0 |
120.0 |
| C09 |
C10 |
C11 |
H101 |
120.0 |
240.0 |
| C11 |
C10 |
C09 |
H091 |
57.7 |
175.5 |
| C11 |
C10 |
C09 |
H092 |
176.5 |
294.5 |
| C10 |
C11 |
C12 |
C14 |
330.2 |
42.2 |
| C12 |
C11 |
C10 |
H111 |
240.1 |
240.5 |
| C12 |
C11 |
C10 |
H112 |
119.9 |
119.4 |
| H102 |
C10 |
C11 |
H101 |
240.0 |
120.0 |
| H111 |
C11 |
C10 |
H112 |
239.7 |
238.9 |
| C09 |
C10 |
C11 |
C12 |
61.2 |
295.9 |
| C11 |
C10 |
C09 |
H102 |
120.0 |
240.0 |
| C11 |
C10 |
C09 |
H101 |
240.0 |
120.0 |
| C09 |
C10 |
C11 |
H111 |
181.0 |
55.4 |
| C09 |
C10 |
C11 |
H112 |
301.3 |
176.5 |
| H102 |
C10 |
C09 |
H101 |
120.0 |
240.0 |
| H091 |
C09 |
C10 |
H092 |
241.2 |
240.9 |
| C12 |
C11 |
C10 |
H102 |
181.2 |
175.9 |
| C12 |
C11 |
C10 |
H101 |
301.2 |
55.9 |
| C10 |
C11 |
C12 |
H111 |
119.9 |
119.4 |
| C10 |
C11 |
C12 |
H112 |
240.1 |
240.6 |
| O13 |
C12 |
C11 |
C14 |
187.5 |
180.0 |
| H111 |
C11 |
C12 |
H112 |
120.2 |
121.2 |
| C11 |
C12 |
O13 |
C14 |
171.6 |
180.0 |
| O13 |
C12 |
C11 |
H111 |
37.8 |
102.8 |
| O13 |
C12 |
C11 |
H112 |
277.6 |
341.6 |
| C14 |
C12 |
C11 |
H111 |
210.3 |
282.8 |
| C14 |
C12 |
C11 |
H112 |
90.1 |
161.6 |
| C12 |
C14 |
C15 |
C16 |
176.4 |
179.8 |
| C12 |
C14 |
C15 |
H151 |
356.4 |
359.7 |
| C08 |
C09 |
C10 |
C11 |
297.1 |
55.0 |
| C08 |
C09 |
C10 |
H102 |
177.1 |
175.0 |
| C08 |
C09 |
C10 |
H101 |
57.1 |
295.1 |
| C10 |
C09 |
C08 |
H091 |
120.6 |
120.5 |
| C10 |
C09 |
C08 |
H092 |
239.4 |
239.5 |
| C08 |
C14 |
C15 |
C16 |
3.3 |
359.9 |
| C08 |
C14 |
C15 |
H151 |
183.3 |
179.8 |
| C14 |
C15 |
C16 |
C06 |
357.4 |
359.9 |
| C14 |
C15 |
C16 |
C02 |
177.5 |
179.6 |
| C16 |
C15 |
C14 |
H151 |
180.0 |
180.0 |
| C10 |
C09 |
C08 |
N07 |
207.6 |
157.3 |
| C08 |
N07 |
C06 |
C16 |
0.4 |
359.8 |
| C15 |
C16 |
C06 |
N07 |
0.7 |
0.3 |
| N07 |
C06 |
C05 |
H052 |
320.7 |
36.7 |
| N07 |
C06 |
C05 |
H051 |
78.6 |
277.5 |
| C14 |
C15 |
C16 |
H151 |
180.0 |
180.0 |
| N07 |
C06 |
C16 |
C15 |
0.7 |
0.3 |
| C15 |
C16 |
C06 |
C02 |
180.0 |
179.7 |
| C06 |
C16 |
C15 |
H151 |
177.4 |
179.9 |
| C16 |
C06 |
C05 |
H052 |
140.3 |
216.5 |
| C16 |
C06 |
C05 |
H051 |
258.2 |
97.4 |
| C15 |
C16 |
C06 |
C05 |
181.1 |
180.4 |
| C06 |
C05 |
C04 |
H042 |
73.1 |
295.0 |
| C06 |
C05 |
C04 |
H041 |
192.5 |
175.0 |
| H052 |
C05 |
C06 |
H051 |
242.2 |
119.1 |
| C15 |
C16 |
C02 |
C06 |
180.0 |
180.3 |
| C02 |
C16 |
C15 |
H151 |
357.5 |
359.6 |
| C16 |
C02 |
C03 |
H032 |
85.9 |
161.7 |
| C16 |
C02 |
C03 |
H031 |
205.6 |
282.9 |
| C05 |
C04 |
C03 |
H032 |
292.2 |
176.4 |
| C05 |
C04 |
C03 |
H031 |
172.5 |
55.3 |
| C03 |
C04 |
C05 |
H042 |
239.7 |
120.0 |
| C03 |
C04 |
C05 |
H041 |
120.3 |
240.1 |
| H042 |
C04 |
C05 |
H041 |
240.6 |
120.0 |
| C15 |
C16 |
C02 |
O01 |
5.6 |
349.0 |
| C15 |
C16 |
C02 |
C03 |
186.9 |
169.0 |
| C04 |
C03 |
C02 |
H032 |
239.9 |
240.6 |
| C04 |
C03 |
C02 |
H031 |
120.2 |
119.4 |
| C02 |
C03 |
C04 |
H042 |
292.1 |
56.0 |
| C02 |
C03 |
C04 |
H041 |
172.7 |
176.0 |
| H032 |
C03 |
C02 |
H031 |
240.3 |
238.8 |
| C05 |
C04 |
C03 |
H042 |
120.3 |
239.9 |
| C05 |
C04 |
C03 |
H041 |
239.7 |
119.9 |
| C02 |
C03 |
C04 |
H032 |
120.2 |
119.5 |
| C02 |
C03 |
C04 |
H031 |
239.8 |
240.6 |
| H032 |
C03 |
C04 |
H031 |
119.7 |
121.1 |
| H042 |
C04 |
C03 |
H041 |
119.4 |
240.0 |
| C09 |
C10 |
H102 |
C11 |
120.2 |
240.0 |
| H102 |
C10 |
C11 |
C12 |
181.2 |
175.9 |
| C11 |
C10 |
H102 |
H101 |
119.9 |
240.0 |
| H102 |
C10 |
C11 |
H111 |
301.1 |
295.4 |
| H102 |
C10 |
C11 |
H112 |
61.3 |
56.5 |
| H102 |
C10 |
C09 |
C08 |
177.1 |
175.0 |
| C09 |
C10 |
H102 |
H101 |
240.1 |
120.0 |
| H102 |
C10 |
C09 |
H091 |
297.7 |
295.5 |
| H102 |
C10 |
C09 |
H092 |
56.5 |
54.5 |
| C09 |
C10 |
H101 |
C11 |
239.9 |
119.9 |
| H101 |
C10 |
C11 |
C12 |
301.2 |
55.9 |
| C11 |
C10 |
H101 |
H102 |
240.1 |
120.0 |
| H101 |
C10 |
C11 |
H111 |
61.0 |
175.4 |
| H101 |
C10 |
C11 |
H112 |
181.3 |
296.5 |
| H101 |
C10 |
C09 |
C08 |
57.1 |
295.1 |
| C09 |
C10 |
H101 |
H102 |
119.9 |
240.0 |
| H101 |
C10 |
C09 |
H091 |
177.7 |
55.5 |
| H101 |
C10 |
C09 |
H092 |
296.5 |
174.6 |
| C14 |
C15 |
H151 |
C16 |
180.0 |
180.0 |
| H151 |
C15 |
C16 |
C06 |
177.4 |
179.9 |
| H151 |
C15 |
C16 |
C02 |
357.5 |
359.6 |
| C02 |
C03 |
H032 |
C04 |
239.1 |
242.2 |
| C02 |
C03 |
H032 |
H031 |
119.5 |
121.1 |
| C04 |
C03 |
H032 |
H031 |
240.4 |
239.0 |
| H032 |
C03 |
C04 |
H042 |
171.9 |
296.5 |
| H032 |
C03 |
C04 |
H041 |
52.5 |
56.5 |
| C02 |
C03 |
H031 |
C04 |
120.9 |
117.8 |
| C02 |
C03 |
H031 |
H032 |
240.4 |
238.8 |
| C04 |
C03 |
H031 |
H032 |
119.5 |
121.1 |
| H031 |
C03 |
C04 |
H042 |
52.2 |
175.4 |
| H031 |
C03 |
C04 |
H041 |
292.8 |
295.4 |
| C05 |
C04 |
H042 |
H041 |
119.1 |
240.0 |
| H042 |
C04 |
C03 |
H032 |
171.9 |
296.5 |
| H042 |
C04 |
C03 |
H031 |
52.2 |
175.4 |
| C03 |
C04 |
H042 |
H041 |
240.8 |
120.0 |
| C05 |
C04 |
H041 |
H042 |
240.9 |
120.1 |
| H041 |
C04 |
C03 |
H032 |
52.5 |
56.5 |
| H041 |
C04 |
C03 |
H031 |
292.8 |
295.4 |
| C03 |
C04 |
H041 |
H042 |
119.2 |
240.0 |
| C06 |
C05 |
H052 |
H051 |
116.6 |
241.0 |
| H052 |
C05 |
C04 |
H042 |
312.0 |
55.4 |
| H052 |
C05 |
C04 |
H041 |
71.4 |
295.4 |
| C06 |
C05 |
H051 |
H052 |
243.4 |
119.1 |
| H051 |
C05 |
C04 |
H042 |
194.2 |
174.7 |
| H051 |
C05 |
C04 |
H041 |
313.6 |
54.6 |
| H091 |
C09 |
C10 |
C11 |
57.7 |
175.5 |
| C10 |
C09 |
H091 |
C08 |
236.4 |
238.2 |
| H091 |
C09 |
C10 |
H102 |
297.7 |
295.5 |
| H091 |
C09 |
C10 |
H101 |
177.7 |
55.5 |
| C10 |
C09 |
H091 |
H092 |
118.2 |
119.2 |
| H092 |
C09 |
C10 |
C11 |
176.5 |
294.5 |
| C10 |
C09 |
H092 |
C08 |
123.6 |
121.8 |
| H092 |
C09 |
C10 |
H102 |
56.5 |
54.5 |
| H092 |
C09 |
C10 |
H101 |
296.5 |
174.6 |
| C10 |
C09 |
H092 |
H091 |
241.8 |
240.9 |
| C10 |
C11 |
H111 |
C12 |
240.8 |
242.1 |
| H111 |
C11 |
C10 |
H102 |
301.1 |
295.4 |
| H111 |
C11 |
C10 |
H101 |
61.0 |
175.4 |
| C10 |
C11 |
H111 |
H112 |
120.4 |
121.0 |
| H111 |
C11 |
C12 |
C14 |
210.3 |
282.8 |
| C12 |
C11 |
H111 |
H112 |
239.6 |
238.9 |
| C10 |
C11 |
H112 |
C12 |
119.2 |
117.8 |
| H112 |
C11 |
C10 |
H102 |
61.3 |
56.5 |
| H112 |
C11 |
C10 |
H101 |
181.3 |
296.5 |
| C10 |
C11 |
H112 |
H111 |
239.6 |
239.0 |
| H112 |
C11 |
C12 |
C14 |
90.1 |
161.6 |
| C12 |
C11 |
H112 |
H111 |
120.4 |
121.2 |