PDB Chemical Component JJM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JJM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C18 |
N13 |
1.500 |
1.465 |
| N12 |
N13 |
1.264 |
1.401 |
| N12 |
C11 |
1.249 |
1.303 |
| N13 |
C14 |
1.269 |
1.362 |
| C11 |
C10 |
1.365 |
1.411 |
| C14 |
N15 |
1.311 |
1.332 |
| C14 |
C10 |
1.398 |
1.409 |
| N15 |
C16 |
1.339 |
1.316 |
| C10 |
C09 |
1.421 |
1.408 |
| C16 |
N17 |
1.323 |
1.321 |
| C09 |
N17 |
1.332 |
1.329 |
| C09 |
N08 |
1.414 |
1.383 |
| N08 |
C06 |
1.425 |
1.398 |
| C06 |
C05 |
1.378 |
1.389 |
| C06 |
C07 |
1.350 |
1.389 |
| C05 |
C04 |
1.369 |
1.381 |
| C07 |
C02 |
1.387 |
1.380 |
| C04 |
C03 |
1.387 |
1.383 |
| C02 |
C03 |
1.353 |
1.383 |
| C02 |
C01 |
1.477 |
1.507 |
| C01 |
H011 |
1.100 |
1.090 |
| C01 |
H012 |
1.100 |
1.090 |
| C01 |
H013 |
1.100 |
1.090 |
| C03 |
H031 |
1.080 |
1.080 |
| C04 |
H041 |
1.080 |
1.080 |
| C05 |
H051 |
1.080 |
1.080 |
| C07 |
H071 |
1.080 |
1.080 |
| N08 |
H081 |
1.000 |
0.970 |
| C11 |
H111 |
1.081 |
1.080 |
| C16 |
H161 |
1.080 |
1.080 |
| C18 |
H181 |
1.100 |
1.090 |
| C18 |
H182 |
1.100 |
1.090 |
| C18 |
H183 |
1.100 |
1.091 |
Bond Angles for JJM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
N12 |
N13 |
107.8 |
109.7 |
| N12 |
N13 |
C14 |
114.8 |
108.2 |
| N12 |
C11 |
H111 |
125.2 |
125.8 |
| N13 |
C14 |
N15 |
132.0 |
134.6 |
| C14 |
N15 |
C16 |
114.8 |
120.7 |
| N15 |
C16 |
N17 |
126.3 |
122.6 |
| N15 |
C16 |
H161 |
116.9 |
118.7 |
| C10 |
C09 |
N17 |
118.3 |
118.4 |
| C10 |
C09 |
N08 |
121.7 |
120.8 |
| C09 |
N17 |
C16 |
119.7 |
121.2 |
| N17 |
C16 |
H161 |
116.8 |
118.7 |
| C09 |
N08 |
H081 |
118.3 |
119.9 |
| C06 |
C05 |
H051 |
119.9 |
120.0 |
| C06 |
C07 |
H071 |
118.9 |
120.0 |
| C05 |
C04 |
H041 |
119.8 |
120.0 |
| C04 |
C03 |
H031 |
120.2 |
119.8 |
| C02 |
C03 |
H031 |
120.2 |
120.0 |
| C02 |
C01 |
H011 |
109.5 |
109.5 |
| C02 |
C01 |
H012 |
109.5 |
109.4 |
| C02 |
C01 |
H013 |
109.5 |
109.5 |
| H011 |
C01 |
H012 |
109.4 |
109.4 |
| H011 |
C01 |
H013 |
109.5 |
109.5 |
| H012 |
C01 |
H013 |
109.5 |
109.5 |
| H181 |
C18 |
H182 |
109.4 |
109.5 |
| H181 |
C18 |
H183 |
109.5 |
109.4 |
| H182 |
C18 |
H183 |
109.5 |
109.5 |
Torsion Angles for JJM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N13 |
N12 |
C11 |
H111 |
181.7 |
180.2 |
| N12 |
N13 |
C14 |
N15 |
180.1 |
180.0 |
| C11 |
N12 |
N13 |
C14 |
358.2 |
359.9 |
| N13 |
C14 |
N15 |
C16 |
180.1 |
179.9 |
| C11 |
C10 |
C09 |
N17 |
179.9 |
179.9 |
| C14 |
N15 |
C16 |
N17 |
1.0 |
359.8 |
| C14 |
N15 |
C16 |
H161 |
181.0 |
179.9 |
| C14 |
C10 |
C09 |
N17 |
0.6 |
0.3 |
| C09 |
N17 |
C16 |
N15 |
359.9 |
0.4 |
| N17 |
C16 |
N15 |
H161 |
180.0 |
179.9 |
| C10 |
C09 |
N17 |
C16 |
359.3 |
359.6 |
| C10 |
C09 |
N08 |
H081 |
350.2 |
5.5 |
| N15 |
C16 |
N17 |
H161 |
180.0 |
180.1 |
| N15 |
C16 |
N17 |
C09 |
359.9 |
0.4 |
| C10 |
C09 |
N17 |
N08 |
179.1 |
180.1 |
| C09 |
N17 |
C16 |
H161 |
179.9 |
180.3 |
| N17 |
C09 |
N08 |
H081 |
169.3 |
185.6 |
| C10 |
C09 |
N08 |
N17 |
180.9 |
179.9 |
| C10 |
C09 |
N08 |
C06 |
170.1 |
185.6 |
| N08 |
C06 |
C05 |
H051 |
358.0 |
0.0 |
| N08 |
C06 |
C07 |
H071 |
359.2 |
359.8 |
| C06 |
C05 |
C04 |
H041 |
180.8 |
180.0 |
| C07 |
C06 |
C05 |
H051 |
181.8 |
179.8 |
| C05 |
C04 |
C03 |
H031 |
179.6 |
180.0 |
| C07 |
C02 |
C03 |
H031 |
177.5 |
180.2 |
| C07 |
C02 |
C01 |
H011 |
92.1 |
269.8 |
| C07 |
C02 |
C01 |
H012 |
212.1 |
29.7 |
| C07 |
C02 |
C01 |
H013 |
332.1 |
149.7 |
| C02 |
C03 |
C04 |
H031 |
180.0 |
180.0 |
| C04 |
C03 |
C02 |
H031 |
180.0 |
180.0 |
| C03 |
C02 |
C01 |
H011 |
268.1 |
90.0 |
| C03 |
C02 |
C01 |
H012 |
28.0 |
209.9 |
| C03 |
C02 |
C01 |
H013 |
148.0 |
329.9 |
| H011 |
C01 |
C02 |
H012 |
240.0 |
240.1 |
| H011 |
C01 |
C02 |
H013 |
120.0 |
120.1 |
| H012 |
C01 |
C02 |
H013 |
240.0 |
240.0 |
| C02 |
C01 |
H011 |
H012 |
120.0 |
119.9 |
| C02 |
C01 |
H011 |
H013 |
240.0 |
240.0 |
| H012 |
C01 |
H011 |
H013 |
120.0 |
120.0 |
| C02 |
C01 |
H012 |
H011 |
239.9 |
240.0 |
| C02 |
C01 |
H012 |
H013 |
120.0 |
120.0 |
| H011 |
C01 |
H012 |
H013 |
240.0 |
239.9 |
| C02 |
C01 |
H013 |
H011 |
120.1 |
120.1 |
| C02 |
C01 |
H013 |
H012 |
240.0 |
240.1 |
| H011 |
C01 |
H013 |
H012 |
119.9 |
120.0 |
| H041 |
C04 |
C03 |
H031 |
359.6 |
0.1 |
| H051 |
C05 |
C04 |
H041 |
0.8 |
359.9 |
| H111 |
C11 |
N12 |
N13 |
181.7 |
180.2 |
| N15 |
C16 |
H161 |
N17 |
180.0 |
179.9 |
| H182 |
C18 |
H181 |
H183 |
120.0 |
120.0 |
| H181 |
C18 |
H182 |
H183 |
240.0 |
240.0 |
| H181 |
C18 |
H183 |
H182 |
120.0 |
120.0 |