PDB Chemical Component JJA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JJA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C25 |
C26 |
1.379 |
1.387 |
| C25 |
N24 |
1.345 |
1.322 |
| C26 |
C27 |
1.382 |
1.387 |
| N24 |
C23 |
1.354 |
1.325 |
| C27 |
N28 |
1.346 |
1.322 |
| C23 |
N28 |
1.355 |
1.327 |
| C23 |
C20 |
1.490 |
1.484 |
| C19 |
C20 |
1.381 |
1.394 |
| C19 |
C18 |
1.379 |
1.377 |
| C20 |
C21 |
1.389 |
1.395 |
| C18 |
C17 |
1.388 |
1.396 |
| C21 |
C22 |
1.388 |
1.378 |
| C17 |
C22 |
1.393 |
1.397 |
| C17 |
C16 |
1.490 |
1.479 |
| O99 |
C16 |
1.227 |
1.216 |
| C16 |
N99 |
1.435 |
1.347 |
| N99 |
C15 |
1.432 |
1.465 |
| C15 |
C8 |
1.497 |
1.507 |
| C54 |
C53 |
1.388 |
1.382 |
| C54 |
C55 |
1.388 |
1.383 |
| C53 |
C52 |
1.389 |
1.382 |
| C55 |
C4 |
1.396 |
1.383 |
| C52 |
C51 |
1.391 |
1.382 |
| C8 |
C7 |
1.411 |
1.377 |
| C8 |
C9 |
1.411 |
1.390 |
| O3 |
C9 |
1.371 |
1.358 |
| O3 |
C12 |
1.375 |
1.429 |
| C13 |
C12 |
1.493 |
1.530 |
| C13 |
C14 |
1.492 |
1.530 |
| C7 |
C6 |
1.397 |
1.396 |
| C4 |
C51 |
1.392 |
1.383 |
| C4 |
S3 |
1.772 |
1.762 |
| C9 |
C10 |
1.396 |
1.390 |
| N4 |
S3 |
1.635 |
1.656 |
| N4 |
C5 |
1.422 |
1.348 |
| C6 |
C5 |
1.482 |
1.477 |
| C6 |
C11 |
1.365 |
1.397 |
| S3 |
O1 |
1.473 |
1.421 |
| S3 |
O2 |
1.479 |
1.420 |
| C10 |
C11 |
1.356 |
1.377 |
| C5 |
O91 |
1.229 |
1.216 |
| C51 |
H1 |
1.080 |
1.080 |
| C52 |
H2 |
1.080 |
1.080 |
| C53 |
H3 |
1.080 |
1.080 |
| C54 |
H4 |
1.080 |
1.079 |
| C55 |
H5 |
1.080 |
1.079 |
| N4 |
H6 |
1.000 |
0.970 |
| C7 |
H7 |
1.080 |
1.080 |
| C10 |
H8 |
1.080 |
1.081 |
| C11 |
H9 |
1.080 |
1.081 |
| C12 |
H10 |
1.100 |
1.090 |
| C12 |
H11 |
1.100 |
1.090 |
| C13 |
H12 |
1.100 |
1.089 |
| C13 |
H13 |
1.100 |
1.090 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H15 |
1.100 |
1.090 |
| C14 |
H16 |
1.100 |
1.090 |
| C15 |
H17 |
1.100 |
1.090 |
| C15 |
H18 |
1.100 |
1.089 |
| N99 |
H19 |
1.000 |
0.970 |
| C18 |
H20 |
1.081 |
1.080 |
| C19 |
H21 |
1.080 |
1.081 |
| C21 |
H22 |
1.080 |
1.079 |
| C22 |
H23 |
1.080 |
1.080 |
| C25 |
H24 |
1.080 |
1.080 |
| C26 |
H25 |
1.080 |
1.080 |
| C27 |
H26 |
1.080 |
1.080 |
Bond Angles for JJA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
C26 |
C27 |
119.4 |
118.6 |
| C26 |
C25 |
H24 |
120.3 |
120.4 |
| C25 |
C26 |
H25 |
120.3 |
120.7 |
| C26 |
C27 |
N28 |
119.8 |
119.2 |
| C27 |
C26 |
H25 |
120.3 |
120.7 |
| C26 |
C27 |
H26 |
120.1 |
120.4 |
| N24 |
C23 |
N28 |
120.3 |
121.6 |
| C23 |
N28 |
C27 |
120.3 |
120.7 |
| N28 |
C27 |
H26 |
120.1 |
120.4 |
| C19 |
C20 |
C21 |
120.2 |
120.1 |
| C20 |
C19 |
H21 |
119.8 |
120.0 |
| C19 |
C18 |
H20 |
119.9 |
120.0 |
| C20 |
C21 |
C22 |
119.5 |
120.0 |
| C20 |
C21 |
H22 |
120.2 |
120.0 |
| C18 |
C17 |
C22 |
119.6 |
120.0 |
| C17 |
C22 |
C21 |
120.2 |
120.0 |
| C22 |
C21 |
H22 |
120.2 |
120.0 |
| C21 |
C22 |
H23 |
119.9 |
120.0 |
| C17 |
C22 |
H23 |
119.9 |
120.0 |
| C16 |
N99 |
H19 |
118.9 |
120.0 |
| N99 |
C15 |
H17 |
107.2 |
109.4 |
| N99 |
C15 |
H18 |
107.1 |
109.5 |
| C54 |
C53 |
H3 |
120.4 |
120.0 |
| C55 |
C54 |
H4 |
119.8 |
120.0 |
| C54 |
C55 |
H5 |
119.6 |
120.0 |
| C53 |
C52 |
H2 |
119.9 |
120.0 |
| C52 |
C51 |
H1 |
119.6 |
120.0 |
| C8 |
C7 |
H7 |
120.0 |
120.0 |
| C8 |
C9 |
C10 |
119.7 |
120.2 |
| O3 |
C12 |
H10 |
106.8 |
109.5 |
| O3 |
C12 |
H11 |
106.8 |
109.4 |
| C13 |
C12 |
H10 |
106.8 |
109.5 |
| C13 |
C12 |
H11 |
106.8 |
109.5 |
| C14 |
C13 |
H12 |
107.2 |
109.5 |
| C14 |
C13 |
H13 |
107.2 |
109.5 |
| C13 |
C14 |
H14 |
109.5 |
109.4 |
| C13 |
C14 |
H15 |
109.5 |
109.5 |
| C13 |
C14 |
H16 |
109.5 |
109.5 |
| C7 |
C6 |
C11 |
120.1 |
119.8 |
| C4 |
C51 |
H1 |
119.6 |
120.0 |
| C9 |
C10 |
C11 |
120.8 |
120.1 |
| C9 |
C10 |
H8 |
119.6 |
120.0 |
| N4 |
C5 |
O91 |
122.6 |
120.0 |
| C5 |
N4 |
H6 |
117.4 |
120.0 |
| C6 |
C11 |
C10 |
121.2 |
119.9 |
| C6 |
C11 |
H9 |
119.4 |
120.1 |
| C11 |
C10 |
H8 |
119.6 |
120.0 |
| C10 |
C11 |
H9 |
119.4 |
120.0 |
| H10 |
C12 |
H11 |
109.5 |
109.5 |
| H12 |
C13 |
H13 |
109.5 |
109.5 |
| H14 |
C14 |
H15 |
109.4 |
109.5 |
| H14 |
C14 |
H16 |
109.5 |
109.4 |
| H15 |
C14 |
H16 |
109.5 |
109.5 |
| H17 |
C15 |
H18 |
109.5 |
109.5 |
Torsion Angles for JJA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
C26 |
C27 |
N28 |
0.1 |
0.1 |
| C27 |
C26 |
C25 |
H25 |
180.0 |
180.0 |
| C25 |
C26 |
C27 |
H26 |
180.2 |
180.0 |
| C25 |
N24 |
C23 |
N28 |
359.3 |
0.0 |
| C27 |
C26 |
C25 |
H24 |
180.3 |
180.0 |
| C25 |
C26 |
C27 |
H25 |
180.0 |
180.0 |
| C23 |
N28 |
C27 |
C26 |
359.2 |
359.9 |
| N28 |
C27 |
C26 |
H26 |
180.0 |
180.1 |
| N24 |
C23 |
N28 |
C27 |
1.1 |
0.0 |
| N28 |
C27 |
C26 |
H25 |
180.1 |
180.0 |
| C26 |
C27 |
N28 |
H26 |
180.0 |
179.9 |
| C26 |
C27 |
N28 |
C23 |
359.2 |
359.9 |
| C23 |
N28 |
C27 |
H26 |
179.2 |
180.0 |
| C23 |
C20 |
C19 |
H21 |
359.6 |
0.0 |
| C23 |
C20 |
C21 |
H22 |
0.7 |
0.0 |
| C20 |
C19 |
C18 |
H20 |
179.7 |
180.0 |
| C19 |
C20 |
C21 |
C22 |
0.3 |
360.0 |
| C19 |
C20 |
C21 |
H22 |
180.3 |
180.0 |
| C19 |
C18 |
C17 |
C22 |
0.5 |
360.0 |
| C21 |
C20 |
C19 |
H21 |
180.0 |
180.0 |
| C17 |
C22 |
C21 |
C20 |
359.9 |
0.0 |
| C22 |
C21 |
C20 |
H22 |
180.0 |
180.0 |
| C20 |
C21 |
C22 |
H23 |
179.9 |
180.3 |
| C18 |
C17 |
C22 |
C21 |
359.7 |
360.0 |
| C18 |
C17 |
C22 |
H23 |
179.7 |
179.7 |
| C20 |
C21 |
C22 |
H22 |
180.0 |
180.0 |
| C17 |
C22 |
C21 |
H23 |
180.0 |
179.7 |
| C20 |
C21 |
C22 |
C17 |
359.9 |
0.0 |
| C17 |
C22 |
C21 |
H22 |
179.9 |
180.0 |
| C21 |
C22 |
C17 |
H23 |
180.0 |
180.3 |
| C17 |
C16 |
N99 |
H19 |
0.5 |
360.0 |
| O99 |
C16 |
N99 |
H19 |
178.7 |
180.0 |
| C16 |
N99 |
C15 |
H17 |
5.9 |
60.0 |
| C16 |
N99 |
C15 |
H18 |
123.3 |
300.0 |
| H17 |
C15 |
N99 |
H18 |
242.6 |
120.0 |
| C15 |
C8 |
C7 |
H7 |
359.7 |
359.9 |
| C54 |
C53 |
C52 |
H2 |
179.7 |
180.0 |
| C55 |
C54 |
C53 |
H3 |
179.8 |
179.7 |
| C53 |
C52 |
C51 |
H1 |
180.6 |
180.0 |
| C55 |
C4 |
C51 |
H1 |
179.5 |
180.3 |
| C4 |
C51 |
C52 |
H1 |
180.0 |
180.0 |
| C8 |
C7 |
C6 |
C11 |
0.1 |
0.2 |
| C9 |
C8 |
C7 |
H7 |
180.1 |
180.1 |
| C8 |
C9 |
C10 |
C11 |
0.2 |
359.8 |
| C8 |
C9 |
C10 |
H8 |
180.2 |
180.0 |
| O3 |
C9 |
C10 |
H8 |
359.9 |
0.0 |
| C13 |
C12 |
O3 |
H10 |
238.5 |
240.0 |
| C13 |
C12 |
O3 |
H11 |
121.5 |
120.0 |
| H10 |
C12 |
O3 |
H11 |
242.9 |
240.0 |
| O3 |
C12 |
C13 |
H10 |
121.5 |
120.0 |
| O3 |
C12 |
C13 |
H11 |
238.5 |
240.1 |
| H10 |
C12 |
C13 |
H11 |
117.1 |
120.0 |
| C14 |
C13 |
C12 |
H10 |
79.3 |
60.0 |
| C14 |
C13 |
C12 |
H11 |
322.2 |
300.0 |
| H12 |
C13 |
C14 |
H13 |
117.4 |
120.0 |
| H14 |
C14 |
C13 |
H15 |
240.0 |
240.0 |
| H14 |
C14 |
C13 |
H16 |
120.0 |
120.0 |
| H15 |
C14 |
C13 |
H16 |
240.0 |
240.0 |
| C7 |
C6 |
C11 |
C10 |
359.9 |
359.5 |
| C7 |
C6 |
C11 |
H9 |
179.9 |
179.7 |
| C52 |
C51 |
C4 |
H1 |
180.0 |
180.0 |
| C6 |
C11 |
C10 |
C9 |
360.0 |
0.5 |
| C11 |
C10 |
C9 |
H8 |
180.0 |
179.7 |
| C9 |
C10 |
C11 |
H9 |
180.0 |
180.3 |
| C6 |
C5 |
N4 |
H6 |
0.2 |
0.1 |
| C9 |
C10 |
C11 |
C6 |
360.0 |
0.5 |
| C6 |
C11 |
C10 |
H8 |
180.0 |
180.2 |
| C10 |
C11 |
C6 |
H9 |
180.0 |
179.8 |
| C9 |
C10 |
C11 |
H8 |
180.0 |
180.3 |
| C6 |
C11 |
C10 |
H9 |
180.0 |
180.2 |
| O91 |
C5 |
N4 |
H6 |
180.6 |
180.0 |
| H2 |
C52 |
C51 |
H1 |
0.6 |
0.0 |
| H3 |
C53 |
C52 |
H2 |
359.8 |
0.0 |
| H4 |
C54 |
C53 |
H3 |
359.9 |
359.9 |
| H4 |
C54 |
C55 |
H5 |
0.2 |
359.8 |
| H5 |
C55 |
C54 |
H4 |
0.2 |
359.8 |
| H6 |
N4 |
C5 |
O91 |
180.6 |
180.0 |
| H7 |
C7 |
C6 |
C11 |
180.1 |
180.2 |
| C9 |
C10 |
H8 |
C11 |
180.0 |
179.7 |
| H8 |
C10 |
C11 |
H9 |
0.0 |
0.0 |
| C6 |
C11 |
H9 |
C10 |
180.0 |
179.8 |
| H9 |
C11 |
C10 |
H8 |
0.0 |
0.0 |
| O3 |
C12 |
H10 |
H11 |
115.3 |
120.0 |
| C13 |
C12 |
H10 |
H11 |
244.7 |
240.0 |
| O3 |
C12 |
H11 |
H10 |
244.8 |
240.0 |
| C13 |
C12 |
H11 |
H10 |
115.3 |
120.0 |
| H12 |
C13 |
C12 |
H10 |
200.6 |
180.0 |
| H12 |
C13 |
C12 |
H11 |
83.5 |
60.0 |
| C14 |
C13 |
H12 |
H13 |
244.1 |
240.0 |
| H12 |
C13 |
C14 |
H14 |
58.7 |
60.0 |
| H12 |
C13 |
C14 |
H15 |
178.7 |
180.0 |
| H12 |
C13 |
C14 |
H16 |
298.7 |
300.0 |
| H13 |
C13 |
C12 |
H10 |
318.0 |
300.0 |
| H13 |
C13 |
C12 |
H11 |
200.9 |
180.0 |
| C14 |
C13 |
H13 |
H12 |
115.9 |
120.0 |
| H13 |
C13 |
C14 |
H14 |
301.3 |
300.0 |
| H13 |
C13 |
C14 |
H15 |
61.3 |
60.0 |
| H13 |
C13 |
C14 |
H16 |
181.3 |
180.0 |
| H14 |
C14 |
C13 |
H12 |
58.7 |
60.0 |
| H14 |
C14 |
C13 |
H13 |
301.3 |
300.0 |
| C13 |
C14 |
H14 |
H15 |
120.0 |
120.0 |
| C13 |
C14 |
H14 |
H16 |
240.0 |
240.0 |
| H15 |
C14 |
H14 |
H16 |
120.0 |
120.0 |
| H15 |
C14 |
C13 |
H12 |
178.7 |
180.0 |
| H15 |
C14 |
C13 |
H13 |
61.3 |
60.0 |
| C13 |
C14 |
H15 |
H14 |
240.0 |
240.0 |
| C13 |
C14 |
H15 |
H16 |
120.0 |
120.0 |
| H14 |
C14 |
H15 |
H16 |
240.0 |
240.0 |
| H16 |
C14 |
C13 |
H12 |
298.7 |
300.0 |
| H16 |
C14 |
C13 |
H13 |
181.3 |
180.0 |
| C13 |
C14 |
H16 |
H14 |
120.0 |
120.0 |
| C13 |
C14 |
H16 |
H15 |
240.0 |
240.0 |
| H14 |
C14 |
H16 |
H15 |
120.0 |
120.0 |
| N99 |
C15 |
H17 |
H18 |
115.9 |
240.0 |
| N99 |
C15 |
H18 |
H17 |
244.1 |
120.0 |
| H19 |
N99 |
C15 |
H17 |
185.9 |
240.0 |
| H19 |
N99 |
C15 |
H18 |
303.3 |
120.0 |
| H20 |
C18 |
C17 |
C22 |
180.5 |
180.0 |
| H21 |
C19 |
C20 |
C21 |
180.0 |
180.0 |
| H21 |
C19 |
C18 |
H20 |
359.7 |
360.0 |
| C20 |
C21 |
H22 |
C22 |
180.0 |
180.0 |
| H22 |
C21 |
C22 |
H23 |
359.9 |
0.3 |
| C17 |
C22 |
H23 |
C21 |
180.0 |
180.3 |
| H23 |
C22 |
C21 |
H22 |
359.9 |
0.3 |
| H24 |
C25 |
C26 |
C27 |
180.3 |
180.0 |
| H24 |
C25 |
C26 |
H25 |
0.3 |
0.0 |
| C25 |
C26 |
H25 |
C27 |
180.0 |
180.0 |
| H25 |
C26 |
C25 |
H24 |
0.3 |
0.0 |
| H25 |
C26 |
C27 |
N28 |
180.1 |
180.0 |
| H25 |
C26 |
C27 |
H26 |
0.2 |
360.0 |
| C26 |
C27 |
H26 |
N28 |
180.0 |
180.1 |
| H26 |
C27 |
C26 |
H25 |
0.2 |
360.0 |