PDB Chemical Component JI2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JI2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C5 1.448 1.383
C4 C3 1.457 1.389
C5 C6 1.442 1.391
C3 C2 1.448 1.380
C6 N6 1.325 1.390
C6 N1 1.381 1.323
C4' C5' 1.556 1.544
C4' C7 1.591 1.530
C4' C3' 1.539 1.543
C2 N1 1.389 1.320
C2 C7 1.557 1.507
C5' N1' 1.491 1.485
C3' N8 1.468 1.469
C3' C2' 1.561 1.544
N11 C10 1.488 1.470
N8 C9 1.487 1.468
N1' C2' 1.507 1.485
C9 C10 1.514 1.530
N6 HN61 1.000 0.971
N6 HN62 1.000 0.970
C5 H5 1.080 1.080
C4 H4 1.080 1.080
C3 H3 1.080 1.080
N1' HN1' 1.000 1.009
C2' H2'1 1.100 1.090
C2' H2'2 1.100 1.090
C3' H3' 1.100 1.090
C4' H4' 1.100 1.090
C5' H5'1 1.100 1.090
C5' H5'2 1.101 1.090
C7 H71 1.100 1.089
C7 H72 1.100 1.090
N8 HN8 1.001 1.009
C9 H91 1.100 1.090
C9 H92 1.101 1.090
C10 H101 1.100 1.089
C10 H102 1.100 1.090
N11 H111 1.000 1.009
N11 H112 1.000 1.009

Bond Angles for JI2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C4 C5 H5 120.7 120.4
C4 C3 C2 117.2 119.3
C3 C4 H4 119.5 120.8
C4 C3 H3 121.4 120.4
C5 C6 N1 119.3 120.6
C3 C2 N1 120.0 120.8
C3 C2 C7 121.3 119.6
C2 C3 H3 121.4 120.3
N6 C6 N1 120.0 119.7
C6 N6 HN61 109.5 120.0
C6 N6 HN62 109.5 120.0
C6 N1 C2 123.9 121.6
C5' C4' C7 111.8 110.3
C5' C4' H4' 115.1 110.4
C4' C5' H5'1 110.9 110.4
C4' C5' H5'2 111.9 110.4
C2 C7 C4' 113.2 109.5
C7 C4' H4' 103.6 110.3
C4' C7 H71 108.3 109.5
C4' C7 H72 107.4 109.5
C4' C3' N8 113.2 110.3
C4' C3' H3' 111.1 110.4
N1 C2 C7 118.7 119.6
C2 C7 H71 108.3 109.4
C2 C7 H72 107.4 109.4
C5' N1' HN1' 109.6 111.0
C3' N8 C9 117.1 111.0
N8 C3' H3' 105.3 110.3
C3' N8 HN8 107.0 111.0
C3' C2' H2'1 111.7 110.4
C3' C2' H2'2 113.0 110.5
N11 C10 H101 110.1 109.5
N11 C10 H102 110.4 109.5
N8 C9 C10 110.8 109.5
C9 N8 HN8 107.0 111.0
N8 C9 H91 109.0 109.4
N8 C9 H92 108.8 109.5
C2' N1' HN1' 109.6 111.0
N1' C2' H2'1 111.7 110.4
N1' C2' H2'2 113.1 110.4
C10 C9 H91 109.1 109.5
C10 C9 H92 108.8 109.5
C9 C10 H101 110.0 109.4
C9 C10 H102 110.4 109.5
HN61 N6 HN62 109.4 120.0
H2'1 C2' H2'2 104.6 110.4
H5'1 C5' H5'2 106.1 110.5
H71 C7 H72 112.4 109.6
H91 C9 H92 110.5 109.4
H101 C10 H102 108.2 109.6
H111 N11 H112 109.4 111.0

Torsion Angles for JI2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 C5 C6 N1 0.2 0.2
C3 C4 C5 H5 179.9 180.0
C4 C3 C2 N1 360.0 359.8
C4 C3 C2 C7 180.0 180.0
C2 C3 C4 H3 180.0 180.0
N6 C6 C5 N1 180.1 179.7
C5 C6 N6 HN61 296.7 180.3
C5 C6 N6 HN62 56.6 0.2
C5 C6 N1 C2 359.8 359.5
C2 C3 C4 H4 180.0 180.1
C4 C3 C2 H3 180.0 180.0
C6 N1 C2 C3 0.1 0.5
C3 C2 C7 C4' 86.7 125.0
N1 C2 C3 C7 180.0 179.7
C3 C2 C7 H71 326.6 245.0
C3 C2 C7 H72 205.1 5.0
C5 C6 N6 N1 179.9 180.3
N6 C6 N1 C2 179.7 179.7
HN61 N6 C6 HN62 240.1 180.0
C3 C2 N1 C6 0.1 0.5
N1 C6 N6 HN61 116.7 0.0
N1 C6 N6 HN62 236.7 180.0
C6 N1 C2 C7 180.1 180.3
C2 C7 C4' C5' 64.5 66.5
C7 C4' C5' H4' 242.1 237.9
C5' C4' C7 H71 184.6 306.5
C5' C4' C7 H72 306.2 186.4
C5' C4' C3' N8 162.1 118.9
C5' C4' C3' H3' 280.4 241.1
C4' C5' N1' HN1' 137.0 80.1
H5'1 C5' C4' H5'2 241.7 122.4
C5' C4' C7 H4' 124.6 122.2
C7 C4' C5' H5'1 200.7 23.9
C7 C4' C5' H5'2 319.0 261.5
C7 C4' C3' N8 43.7 0.0
C7 C4' C3' H3' 162.0 122.2
N1 C2 C7 C4' 266.7 305.2
C2 C7 C4' H71 240.0 120.0
C2 C7 C4' H72 118.4 240.1
H71 C7 C4' H72 238.4 120.1
C2 C7 C4' C3' 175.4 182.1
C4' C3' N8 C9 155.9 157.9
N8 C3' C4' H3' 241.7 237.8
C4' C3' N8 HN8 275.9 281.9
C4' C3' C2' H2'1 85.3 217.4
C4' C3' C2' H2'2 202.9 95.0
C3 C2 N1 C7 180.0 180.3
N1 C2 C3 H3 180.0 179.8
N1 C2 C7 H71 146.6 65.2
N1 C2 C7 H72 25.1 185.3
C3 C2 C7 N1 180.0 179.8
C7 C2 C3 H3 360.0 0.0
C5' C4' C7 C2 64.5 66.5
C2 C7 C4' H4' 299.9 304.3
C4' C7 C2 H71 120.0 240.0
C4' C7 C2 H72 241.6 120.0
H71 C7 C2 H72 121.6 240.0
C2' N1' C5' HN1' 240.0 240.4
C5' N1' C2' H2'1 250.7 158.3
C5' N1' C2' H2'2 133.1 280.6
C4' C3' N8 H3' 121.6 122.2
N8 C3' C2' H2'1 324.6 98.5
N8 C3' C2' H2'2 82.3 336.1
C3' N8 C9 C10 175.9 180.0
C9 N8 C3' HN8 240.0 236.1
C3' N8 C9 H91 295.9 300.0
C3' N8 C9 H92 56.4 60.0
C3' C2' N1' HN1' 250.7 280.0
N1' C2' C3' H2'1 240.0 118.7
N1' C2' C3' H2'2 122.4 241.1
H2'1 C2' C3' H2'2 242.3 122.4
N11 C10 C9 H91 303.8 60.0
N11 C10 C9 H92 183.2 300.0
C9 C10 N11 H101 240.0 119.9
C9 C10 N11 H102 120.7 240.0
H101 C10 N11 H102 240.7 120.1
C9 N8 C3' H3' 34.3 35.7
C3' N8 C9 HN8 120.0 124.0
C10 C9 N8 H91 240.0 240.0
C10 C9 N8 H92 119.5 120.0
N8 C9 C10 H101 303.8 299.9
N8 C9 C10 H102 184.4 60.0
H91 C9 N8 H92 239.5 240.0
C5' N1' C2' HN1' 120.0 119.6
C3' C2' N1' H2'1 120.0 241.2
C3' C2' N1' H2'2 237.6 118.9
H2'1 C2' N1' H2'2 117.7 237.7
N11 C10 C9 H101 120.0 240.0
N11 C10 C9 H102 239.3 120.0
C10 C9 N8 HN8 55.9 56.1
N8 C9 C10 H91 120.0 120.0
N8 C9 C10 H92 240.5 240.0
H91 C9 C10 H92 120.5 120.0
H101 C10 C9 H102 119.3 239.9
HN61 N6 C6 N1 116.7 0.0
C6 N6 HN61 HN62 120.0 180.0
HN62 N6 C6 N1 236.7 180.0
C6 N6 HN62 HN61 240.0 180.0
H5 C5 C6 N1 180.2 180.2
H4 C4 C5 H5 360.0 359.9
H4 C4 C3 C2 180.0 180.1
H4 C4 C3 H3 359.9 0.0
C4 C3 H3 C2 180.0 180.0
H3 C3 C4 H4 359.9 0.0
H3 C3 C2 N1 180.0 179.8
H3 C3 C2 C7 360.0 0.0
HN1' N1' C2' H2'1 130.7 38.7
HN1' N1' C2' H2'2 13.1 161.0
C3' C2' H2'1 H2'2 122.6 237.5
H2'1 C2' N1' HN1' 130.7 38.7
N1' C2' H2'1 H2'2 237.4 122.4
C3' C2' H2'2 H2'1 238.3 122.4
H2'2 C2' N1' HN1' 13.1 161.0
N1' C2' H2'2 H2'1 121.7 237.7
C4' C3' H3' N8 237.0 237.8
H3' C3' N8 C9 34.3 35.7
H3' C3' N8 HN8 154.3 159.6
H3' C3' C2' H2'1 206.5 336.4
H3' C3' C2' H2'2 324.1 214.0
C5' C4' H4' C7 237.6 237.9
H4' C4' C5' H5'1 318.6 146.1
H4' C4' C5' H5'2 76.9 23.6
H4' C4' C7 H71 60.0 184.3
H4' C4' C7 H72 181.6 64.2
H4' C4' C3' N8 285.8 237.9
H4' C4' C3' H3' 44.1 0.0
H5'1 C5' C4' C7 200.7 23.9
H5'1 C5' C4' H4' 318.6 146.1
C4' C5' H5'1 H5'2 121.8 237.6
H5'1 C5' N1' HN1' 17.0 198.8
H5'2 C5' C4' C7 319.0 261.5
H5'2 C5' C4' H4' 76.9 23.6
C4' C5' H5'2 H5'1 238.8 122.4
H5'2 C5' N1' HN1' 258.7 321.3
C2 C7 H71 C4' 123.0 240.0
H71 C7 C4' H4' 60.0 184.3
C4' C7 H71 H72 118.5 239.9
C2 C7 H71 H72 241.5 120.0
C2 C7 H72 C4' 238.0 119.9
H72 C7 C4' H4' 181.6 64.2
C4' C7 H72 H71 241.0 120.1
C2 C7 H72 H71 119.0 240.0
C3' N8 HN8 C9 233.8 236.0
HN8 N8 C3' H3' 154.3 159.6
HN8 N8 C9 C10 55.9 56.1
HN8 N8 C9 H91 175.9 176.1
HN8 N8 C9 H92 296.4 296.0
N8 C9 H91 C10 238.9 240.0
H91 C9 N8 HN8 175.9 176.1
N8 C9 H91 H92 119.5 120.0
C10 C9 H91 H92 240.5 240.0
H91 C9 C10 H101 183.8 180.0
H91 C9 C10 H102 64.4 300.0
N8 C9 H92 C10 120.7 120.0
H92 C9 N8 HN8 296.4 296.0
N8 C9 H92 H91 240.4 240.1
C10 C9 H92 H91 119.7 120.0
H92 C9 C10 H101 63.2 60.0
H92 C9 C10 H102 303.9 180.0
N11 C10 H101 H102 120.7 240.0
H101 C10 C9 H91 183.8 180.0
H101 C10 C9 H92 63.2 60.0
C9 C10 H101 H102 239.3 120.0
N11 C10 H102 H101 239.5 120.1
H102 C10 C9 H91 64.4 300.0
H102 C10 C9 H92 303.9 180.0
C9 C10 H102 H101 120.4 240.0
H111 N11 C10 H101 315.8 60.1
H111 N11 C10 H102 75.2 300.0
H112 N11 C10 H101 75.8 184.0
H112 N11 C10 H102 195.2 63.9