PDB Chemical Component JHD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JHD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
O09 |
1.322 |
1.430 |
| O09 |
C08 |
1.388 |
1.360 |
| O02 |
C01 |
1.212 |
1.429 |
| O02 |
C03 |
1.230 |
1.361 |
| C08 |
C03 |
1.361 |
1.391 |
| C08 |
C07 |
1.384 |
1.386 |
| C03 |
C04 |
1.291 |
1.386 |
| C07 |
C06 |
1.396 |
1.383 |
| C04 |
C05 |
1.262 |
1.382 |
| C06 |
C05 |
1.265 |
1.383 |
| C06 |
C11 |
1.364 |
1.507 |
| N12 |
C11 |
1.313 |
1.469 |
| C10 |
H103 |
1.100 |
1.090 |
| C10 |
H101 |
1.100 |
1.089 |
| C10 |
H102 |
1.100 |
1.090 |
| N12 |
H121 |
1.000 |
1.009 |
| N12 |
H122 |
1.000 |
1.009 |
| C01 |
H011 |
1.100 |
1.091 |
| C01 |
H012 |
1.100 |
1.090 |
| C01 |
H013 |
1.101 |
1.090 |
| C04 |
H041 |
1.080 |
1.080 |
| C05 |
H051 |
1.080 |
1.080 |
| C07 |
H071 |
1.080 |
1.080 |
| C11 |
H111 |
1.101 |
1.091 |
| C11 |
H112 |
1.101 |
1.090 |
Bond Angles for JHD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
O09 |
C08 |
120.0 |
117.0 |
| O09 |
C10 |
H103 |
109.5 |
109.4 |
| O09 |
C10 |
H101 |
109.5 |
109.5 |
| O09 |
C10 |
H102 |
109.5 |
109.4 |
| O02 |
C01 |
H011 |
109.5 |
109.5 |
| O02 |
C01 |
H012 |
109.5 |
109.5 |
| O02 |
C01 |
H013 |
109.5 |
109.5 |
| O02 |
C03 |
C04 |
123.4 |
120.1 |
| C08 |
C07 |
H071 |
121.8 |
120.0 |
| C03 |
C04 |
C05 |
122.4 |
120.0 |
| C03 |
C04 |
H041 |
118.8 |
120.0 |
| C07 |
C06 |
C11 |
128.7 |
119.9 |
| C05 |
C04 |
H041 |
118.8 |
120.0 |
| C04 |
C05 |
H051 |
118.0 |
119.9 |
| C06 |
C05 |
H051 |
117.9 |
119.9 |
| N12 |
C11 |
C06 |
121.8 |
109.5 |
| C06 |
C11 |
H111 |
106.3 |
109.5 |
| C06 |
C11 |
H112 |
106.3 |
109.5 |
| C11 |
N12 |
H121 |
109.5 |
111.0 |
| C11 |
N12 |
H122 |
109.5 |
111.0 |
| N12 |
C11 |
H111 |
106.3 |
109.5 |
| N12 |
C11 |
H112 |
106.3 |
109.5 |
| H103 |
C10 |
H101 |
109.4 |
109.5 |
| H103 |
C10 |
H102 |
109.5 |
109.5 |
| H101 |
C10 |
H102 |
109.5 |
109.5 |
| H121 |
N12 |
H122 |
109.5 |
111.0 |
| H011 |
C01 |
H012 |
109.5 |
109.5 |
| H011 |
C01 |
H013 |
109.5 |
109.5 |
| H012 |
C01 |
H013 |
109.5 |
109.5 |
| H111 |
C11 |
H112 |
109.5 |
109.4 |
Torsion Angles for JHD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H103 |
C10 |
O09 |
H101 |
240.0 |
240.0 |
| H103 |
C10 |
O09 |
H102 |
120.0 |
120.0 |
| H101 |
C10 |
O09 |
H102 |
240.0 |
240.0 |
| C08 |
O09 |
C10 |
H103 |
180.0 |
300.0 |
| C08 |
O09 |
C10 |
H101 |
300.0 |
60.0 |
| C08 |
O09 |
C10 |
H102 |
60.0 |
180.0 |
| O09 |
C08 |
C07 |
H071 |
358.6 |
0.1 |
| H011 |
C01 |
O02 |
H012 |
240.0 |
240.0 |
| H011 |
C01 |
O02 |
H013 |
120.0 |
120.0 |
| H012 |
C01 |
O02 |
H013 |
240.0 |
240.0 |
| C03 |
O02 |
C01 |
H011 |
180.0 |
300.0 |
| C03 |
O02 |
C01 |
H012 |
300.0 |
60.0 |
| C03 |
O02 |
C01 |
H013 |
60.0 |
180.0 |
| O02 |
C03 |
C04 |
C05 |
180.7 |
180.0 |
| O02 |
C03 |
C04 |
H041 |
0.7 |
359.9 |
| C10 |
O09 |
C08 |
C03 |
310.2 |
180.0 |
| C08 |
C03 |
C04 |
H041 |
178.0 |
180.2 |
| C10 |
O09 |
C08 |
C07 |
130.0 |
0.2 |
| C08 |
C07 |
C06 |
C11 |
181.0 |
179.8 |
| C05 |
C04 |
C03 |
H041 |
180.0 |
180.1 |
| C03 |
C04 |
C05 |
H051 |
182.3 |
180.0 |
| C07 |
C06 |
C05 |
H051 |
177.8 |
180.0 |
| N12 |
C11 |
C06 |
C07 |
358.3 |
270.0 |
| C07 |
C06 |
C11 |
H111 |
120.0 |
150.0 |
| C07 |
C06 |
C11 |
H112 |
236.6 |
30.0 |
| C03 |
C04 |
C05 |
H041 |
180.0 |
179.9 |
| C06 |
C05 |
C04 |
H051 |
180.0 |
180.0 |
| C06 |
C05 |
C04 |
H041 |
182.3 |
180.1 |
| C04 |
C05 |
C06 |
H051 |
180.0 |
180.0 |
| N12 |
C11 |
C06 |
C05 |
177.6 |
90.0 |
| C11 |
C06 |
C05 |
H051 |
358.4 |
360.0 |
| C06 |
C11 |
N12 |
H121 |
180.0 |
56.1 |
| C06 |
C11 |
N12 |
H122 |
300.0 |
180.0 |
| N12 |
C11 |
C06 |
H111 |
238.3 |
120.0 |
| N12 |
C11 |
C06 |
H112 |
121.7 |
240.0 |
| H111 |
C11 |
C06 |
H112 |
243.4 |
120.0 |
| C07 |
C06 |
C11 |
N12 |
358.3 |
270.0 |
| C06 |
C11 |
N12 |
H111 |
121.7 |
240.0 |
| C06 |
C11 |
N12 |
H112 |
238.3 |
120.1 |
| H121 |
N12 |
C11 |
H122 |
240.0 |
236.1 |
| H111 |
C11 |
N12 |
H112 |
116.6 |
240.1 |
| H103 |
C10 |
O09 |
C08 |
180.0 |
300.0 |
| O09 |
C10 |
H103 |
H101 |
120.0 |
120.0 |
| O09 |
C10 |
H103 |
H102 |
240.0 |
240.1 |
| H101 |
C10 |
H103 |
H102 |
120.0 |
120.1 |
| H101 |
C10 |
O09 |
C08 |
300.0 |
60.0 |
| O09 |
C10 |
H101 |
H103 |
240.0 |
240.0 |
| O09 |
C10 |
H101 |
H102 |
120.0 |
120.0 |
| H103 |
C10 |
H101 |
H102 |
240.0 |
239.9 |
| H102 |
C10 |
O09 |
C08 |
60.0 |
180.0 |
| O09 |
C10 |
H102 |
H103 |
120.0 |
119.9 |
| O09 |
C10 |
H102 |
H101 |
240.0 |
240.0 |
| H103 |
C10 |
H102 |
H101 |
120.0 |
120.1 |
| H121 |
N12 |
C11 |
C06 |
180.0 |
56.1 |
| C11 |
N12 |
H121 |
H122 |
120.0 |
124.0 |
| H121 |
N12 |
C11 |
H111 |
58.3 |
176.1 |
| H121 |
N12 |
C11 |
H112 |
301.7 |
296.0 |
| H122 |
N12 |
C11 |
C06 |
300.0 |
180.0 |
| C11 |
N12 |
H122 |
H121 |
240.0 |
236.1 |
| H122 |
N12 |
C11 |
H111 |
178.3 |
300.0 |
| H122 |
N12 |
C11 |
H112 |
61.7 |
59.9 |
| O02 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
| O02 |
C01 |
H011 |
H013 |
240.0 |
240.0 |
| H012 |
C01 |
H011 |
H013 |
120.0 |
120.0 |
| O02 |
C01 |
H012 |
H011 |
240.0 |
240.0 |
| O02 |
C01 |
H012 |
H013 |
120.0 |
120.0 |
| H011 |
C01 |
H012 |
H013 |
240.0 |
240.0 |
| O02 |
C01 |
H013 |
H011 |
120.0 |
120.0 |
| O02 |
C01 |
H013 |
H012 |
240.0 |
240.0 |
| H011 |
C01 |
H013 |
H012 |
120.0 |
120.0 |
| C03 |
C04 |
H041 |
C05 |
180.0 |
180.1 |
| H041 |
C04 |
C05 |
H051 |
2.3 |
0.1 |
| H051 |
C05 |
C04 |
H041 |
2.3 |
0.1 |
| H071 |
C07 |
C06 |
C11 |
1.0 |
360.0 |
| N12 |
C11 |
H111 |
C06 |
131.1 |
240.0 |
| C06 |
C11 |
H111 |
H112 |
114.4 |
240.0 |
| H111 |
C11 |
N12 |
H121 |
58.3 |
176.1 |
| H111 |
C11 |
N12 |
H122 |
178.3 |
300.0 |
| N12 |
C11 |
H111 |
H112 |
245.6 |
120.0 |
| N12 |
C11 |
H112 |
C06 |
228.9 |
120.0 |
| C06 |
C11 |
H112 |
H111 |
245.6 |
120.0 |
| H112 |
C11 |
N12 |
H121 |
301.7 |
296.0 |
| H112 |
C11 |
N12 |
H122 |
61.7 |
59.9 |
| N12 |
C11 |
H112 |
H111 |
114.5 |
240.0 |