PDB Chemical Component JGY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JGY

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C04	C03	1.352	1.354
C04	C05	1.389	1.416
C03	N02	1.373	1.350
O08	C07	1.194	1.216
C05	C07	1.353	1.477
C05	N06	1.296	1.318
N02	C01	1.465	1.465
N02	N06	1.286	1.285
C07	N09	1.338	1.348
N09	C10	1.449	1.465
C10	C11	1.570	1.530
C11	C12	1.521	1.549
C11	O15	1.374	1.436
C12	C13	1.509	1.553
O15	C14	1.348	1.432
C13	C14	1.513	1.543
C10	H101	1.100	1.090
C10	H102	1.100	1.091
C13	H131	1.100	1.090
C13	H132	1.100	1.090
C01	H013	1.100	1.090
C01	H011	1.100	1.090
C01	H012	1.100	1.090
C03	H031	1.080	1.080
C04	H041	1.080	1.080
N09	H091	1.001	0.970
C11	H111	1.100	1.090
C12	H122	1.100	1.090
C12	H121	1.100	1.090
C14	H142	1.100	1.090
C14	H141	1.100	1.090

Bond Angles for JGY

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C04	C03	H031	127.4	126.3
C04	C05	C07	126.2	126.5
C04	C05	N06	110.6	107.0
C05	C04	H041	127.4	127.2
C03	N02	N06	111.7	110.2
O08	C07	N09	117.1	120.0
N06	C05	C07	123.1	126.5
C05	C07	N09	125.6	120.0
N02	N06	C05	107.2	110.1
N02	C01	H013	109.5	109.4
N02	C01	H011	109.5	109.5
N02	C01	H012	109.4	109.5
C07	N09	H091	117.8	120.0
N09	C10	C11	116.2	109.5
N09	C10	H101	107.7	109.5
N09	C10	H102	107.8	109.5
C10	C11	C12	115.7	110.3
C10	C11	O15	113.2	110.3
C11	C10	H101	107.8	109.4
C11	C10	H102	107.7	109.5
C10	C11	H111	106.6	110.2
C12	C11	O15	105.1	105.1
C12	C11	H111	107.1	110.3
C11	C12	H122	111.2	111.1
C11	C12	H121	111.2	111.1
C11	O15	C14	111.5	109.9
O15	C11	H111	109.0	110.4
C12	C13	C14	105.8	102.3
C12	C13	H131	110.4	110.8
C12	C13	H132	110.4	111.0
O15	C14	H142	110.8	109.8
O15	C14	H141	110.8	109.9
C14	C13	H131	110.4	110.9
C14	C13	H132	110.4	110.8
C13	C14	H142	110.8	109.8
C13	C14	H141	110.8	109.9
H101	C10	H102	109.5	109.4
H131	C13	H132	109.5	110.8
H013	C01	H011	109.5	109.4
H013	C01	H012	109.5	109.5
H011	C01	H012	109.5	109.5
H122	C12	H121	109.5	111.0
H142	C14	H141	109.5	109.8

Torsion Angles for JGY

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C04	C03	N02	N06	0.6	0.3
C05	C04	C03	H031	179.7	180.0
N06	C05	C04	C07	182.0	179.7
C04	C05	C07	N09	148.7	180.0
N02	N06	C05	C04	0.5	0.5
C03	N02	N06	C05	359.3	359.5
C03	N02	C01	H013	181.7	270.3
C03	N02	C01	H011	301.7	30.2
C03	N02	C01	H012	61.7	150.3
C05	C07	O08	N09	182.4	180.0
O08	C07	N09	H091	180.6	180.0
C04	C05	C07	N06	182.2	179.7
C07	C05	C04	H041	357.9	0.0
O08	C07	C05	N09	177.4	180.0
N02	N06	C05	C07	182.4	180.2
C05	C07	N09	H091	358.0	0.0
C04	C05	N06	C07	178.1	180.3
N06	C05	C04	H041	179.9	179.7
N06	C05	C07	N09	326.6	0.3
H013	C01	N02	H011	240.0	240.0
H013	C01	N02	H012	120.0	120.0
H011	C01	N02	H012	240.0	240.0
C04	C05	N06	N02	0.5	0.5
N06	N02	C01	H013	360.0	90.0
N06	N02	C01	H011	120.0	209.9
N06	N02	C01	H012	240.0	330.0
C07	N09	C10	C11	218.4	180.0
C07	N09	C10	H101	339.4	300.0
C07	N09	C10	H102	97.4	60.0
N09	C10	C11	C12	68.0	185.0
N09	C10	C11	O15	306.7	69.3
C11	C10	N09	H101	239.0	240.0
C11	C10	N09	H102	121.0	120.0
N09	C10	C11	H111	186.9	307.1
H101	C10	N09	H102	242.0	240.0
N09	C10	C11	H101	121.0	120.0
N09	C10	C11	H102	239.0	240.0
C12	C11	C10	O15	121.3	115.7
C12	C11	C10	H111	241.1	237.9
C10	C11	C12	H122	333.8	86.7
C10	C11	C12	H121	96.1	322.6
C10	C11	O15	C14	161.5	143.4
O15	C11	C10	H111	119.8	122.2
H101	C10	C11	H102	118.0	119.9
C10	C11	C12	O15	234.5	241.1
C12	C11	C10	H101	307.0	65.0
C12	C11	C10	H102	189.0	305.0
C10	C11	C12	H111	118.6	122.0
C12	C11	O15	C14	34.4	24.5
O15	C11	C12	H111	244.1	240.9
C11	C12	C13	C14	0.9	34.1
C11	C12	C13	H131	120.3	152.3
C11	C12	C13	H132	241.4	275.8
H122	C12	C11	H121	237.7	124.1
C10	C11	O15	C12	127.1	118.9
O15	C11	C10	H101	185.8	309.3
O15	C11	C10	H102	67.7	189.3
C10	C11	O15	H111	241.6	237.9
C12	C11	O15	H111	114.6	119.0
O15	C11	C12	H122	99.4	205.6
O15	C11	C12	H121	221.6	81.5
C11	O15	C14	H142	85.8	238.8
C11	O15	C14	H141	207.5	117.8
C10	C11	C12	C13	215.0	204.6
C14	C13	C12	H131	240.6	241.8
C14	C13	C12	H132	119.4	118.3
C12	C13	C14	H142	259.1	98.1
C12	C13	C14	H141	137.4	219.1
H131	C13	C12	H132	238.8	236.5
C14	O15	C11	H111	279.9	265.5
O15	C14	C13	H131	258.9	220.5
O15	C14	C13	H132	137.7	97.1
C13	C14	O15	H142	240.8	119.5
C13	C14	O15	H141	119.1	240.4
H142	C14	O15	H141	238.3	120.9
C11	O15	C14	C13	326.6	358.2
C12	C13	C14	H131	119.4	118.2
C12	C13	C14	H132	240.6	241.6
O15	C14	C13	H142	119.2	240.5
O15	C14	C13	H141	240.9	119.6
H131	C13	C14	H132	121.2	123.5
H142	C14	C13	H141	121.7	239.1
N09	C10	H101	C11	233.8	240.0
N09	C10	H101	H102	116.9	120.0
H101	C10	C11	C12	307.0	65.0
H101	C10	C11	O15	185.8	309.3
C11	C10	H101	H102	243.1	240.0
H101	C10	C11	H111	66.0	187.0
N09	C10	H102	C11	126.2	120.0
N09	C10	H102	H101	243.1	240.0
H102	C10	C11	C12	189.0	305.0
H102	C10	C11	O15	67.7	189.3
C11	C10	H102	H101	116.9	119.9
H102	C10	C11	H111	307.9	67.1
C12	C13	H131	C14	243.4	247.2
C12	C13	H131	H132	121.7	123.7
C14	C13	H131	H132	238.3	236.5
H131	C13	C14	H142	139.7	340.0
H131	C13	C14	H141	18.0	100.9
C12	C13	H132	C14	116.6	112.9
C12	C13	H132	H131	238.3	236.4
C14	C13	H132	H131	121.7	123.5
H132	C13	C14	H142	18.6	216.5
H132	C13	C14	H141	256.9	337.4
N02	C01	H013	H011	120.0	120.0
N02	C01	H013	H012	240.0	240.0
H011	C01	H013	H012	120.0	120.0
N02	C01	H011	H013	239.9	240.1
N02	C01	H011	H012	120.0	120.0
H013	C01	H011	H012	240.0	240.0
N02	C01	H012	H013	120.0	120.0
N02	C01	H012	H011	240.0	240.0
H013	C01	H012	H011	120.0	120.0
H031	C03	N02	N06	180.6	180.3
H041	C04	C03	H031	359.7	359.9
H041	C04	C05	C07	357.9	0.0
H041	C04	C05	N06	179.9	179.7
H091	N09	C10	C11	38.4	0.0
H091	N09	C10	H101	159.4	120.0
H091	N09	C10	H102	277.4	240.0
C10	C11	H111	C12	235.7	237.9
C10	C11	H111	O15	122.4	122.1
H111	C11	C10	H101	66.0	187.0
H111	C11	C10	H102	307.9	67.1
C12	C11	H111	O15	246.8	244.2
H111	C11	C12	H122	215.2	324.7
H111	C11	C12	H121	337.5	200.6
H111	C11	O15	C14	279.9	265.5
H122	C12	C11	O15	99.4	205.6
H122	C12	C11	H111	215.2	324.7
C11	C12	H122	H121	123.3	235.8
H122	C12	C13	C14	242.0	152.0
H122	C12	C13	H131	1.4	270.2
H122	C12	C13	H132	122.6	33.8
H121	C12	C11	O15	221.6	81.5
H121	C12	C11	H111	337.5	200.6
C11	C12	H121	H122	236.7	124.2
H121	C12	C13	C14	119.8	276.2
H121	C12	C13	H131	239.2	34.4
H121	C12	C13	H132	0.3	157.9
O15	C14	H142	H141	122.5	239.1
H142	C14	C13	H131	139.7	340.0
H142	C14	C13	H132	18.6	216.5
C13	C14	H142	H141	237.5	120.9
O15	C14	H141	H142	237.5	120.9
H141	C14	C13	H131	18.0	100.9
H141	C14	C13	H132	256.9	337.4
C13	C14	H141	H142	122.5	239.1