PDB Chemical Component JGG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JGG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O14 |
C13 |
1.405 |
1.429 |
| O14 |
C15 |
1.346 |
1.430 |
| C13 |
C12 |
1.469 |
1.533 |
| C15 |
C16 |
1.486 |
1.533 |
| N18 |
C17 |
1.137 |
1.135 |
| C17 |
C03 |
1.439 |
1.432 |
| C02 |
C03 |
1.376 |
1.396 |
| C02 |
C01 |
1.321 |
1.380 |
| C16 |
N11 |
1.453 |
1.472 |
| C12 |
N11 |
1.485 |
1.472 |
| C03 |
C04 |
1.334 |
1.397 |
| C01 |
C06 |
1.321 |
1.384 |
| N11 |
C09 |
1.330 |
1.347 |
| C09 |
O10 |
1.220 |
1.216 |
| C09 |
N08 |
1.207 |
1.348 |
| C04 |
C05 |
1.310 |
1.379 |
| C06 |
C05 |
1.369 |
1.385 |
| C06 |
C07 |
1.504 |
1.506 |
| N08 |
C07 |
1.319 |
1.465 |
| C13 |
H132 |
1.100 |
1.090 |
| C13 |
H131 |
1.100 |
1.091 |
| C15 |
H151 |
1.100 |
1.090 |
| C15 |
H152 |
1.100 |
1.090 |
| C01 |
H011 |
1.080 |
1.080 |
| C02 |
H021 |
1.080 |
1.079 |
| C04 |
H041 |
1.080 |
1.080 |
| C05 |
H051 |
1.080 |
1.080 |
| C07 |
H071 |
1.100 |
1.090 |
| C07 |
H072 |
1.100 |
1.091 |
| N08 |
H081 |
0.999 |
0.970 |
| C12 |
H121 |
1.100 |
1.089 |
| C12 |
H122 |
1.100 |
1.090 |
| C16 |
H162 |
1.100 |
1.089 |
| C16 |
H161 |
1.100 |
1.091 |
Bond Angles for JGG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O14 |
C13 |
H132 |
108.4 |
109.5 |
| O14 |
C13 |
H131 |
108.4 |
109.5 |
| O14 |
C15 |
C16 |
112.1 |
109.2 |
| O14 |
C15 |
H151 |
108.8 |
109.5 |
| O14 |
C15 |
H152 |
108.8 |
109.6 |
| C13 |
C12 |
N11 |
111.4 |
108.3 |
| C12 |
C13 |
H132 |
108.4 |
109.6 |
| C12 |
C13 |
H131 |
108.4 |
109.5 |
| C13 |
C12 |
H121 |
109.0 |
109.7 |
| C13 |
C12 |
H122 |
109.0 |
109.7 |
| C15 |
C16 |
N11 |
113.8 |
108.4 |
| C16 |
C15 |
H151 |
108.8 |
109.5 |
| C16 |
C15 |
H152 |
108.8 |
109.5 |
| C15 |
C16 |
H162 |
108.4 |
109.7 |
| C15 |
C16 |
H161 |
108.4 |
109.7 |
| C17 |
C03 |
C02 |
118.0 |
120.1 |
| C17 |
C03 |
C04 |
124.6 |
120.2 |
| C02 |
C03 |
C04 |
117.4 |
119.7 |
| C03 |
C02 |
H021 |
119.2 |
120.1 |
| C02 |
C01 |
C06 |
120.9 |
120.2 |
| C02 |
C01 |
H011 |
119.6 |
119.9 |
| C03 |
C04 |
C05 |
119.6 |
119.9 |
| C03 |
C04 |
H041 |
120.2 |
120.0 |
| C01 |
C06 |
C05 |
116.8 |
120.3 |
| C01 |
C06 |
C07 |
122.1 |
119.9 |
| C06 |
C01 |
H011 |
119.6 |
119.9 |
| C09 |
N08 |
H081 |
115.9 |
120.0 |
| C05 |
C04 |
H041 |
120.2 |
120.1 |
| C04 |
C05 |
H051 |
118.3 |
120.0 |
| C06 |
C05 |
H051 |
118.3 |
119.9 |
| C06 |
C07 |
H071 |
109.1 |
109.5 |
| C06 |
C07 |
H072 |
109.1 |
109.5 |
| N08 |
C07 |
H071 |
109.1 |
109.5 |
| N08 |
C07 |
H072 |
109.1 |
109.4 |
| H132 |
C13 |
H131 |
109.4 |
109.5 |
| H151 |
C15 |
H152 |
109.4 |
109.5 |
| H071 |
C07 |
H072 |
109.4 |
109.5 |
| H121 |
C12 |
H122 |
109.5 |
109.8 |
| H162 |
C16 |
H161 |
109.5 |
109.7 |
Torsion Angles for JGG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
C13 |
O14 |
H132 |
239.4 |
120.0 |
| C12 |
C13 |
O14 |
H131 |
120.6 |
240.1 |
| O14 |
C13 |
C12 |
H121 |
86.3 |
67.3 |
| O14 |
C13 |
C12 |
H122 |
205.8 |
188.0 |
| H132 |
C13 |
O14 |
H131 |
241.3 |
120.1 |
| C15 |
O14 |
C13 |
H132 |
96.6 |
302.6 |
| C15 |
O14 |
C13 |
H131 |
215.3 |
182.5 |
| O14 |
C15 |
C16 |
N11 |
325.7 |
52.3 |
| C16 |
C15 |
O14 |
H151 |
239.6 |
240.1 |
| C16 |
C15 |
O14 |
H152 |
120.4 |
119.9 |
| O14 |
C15 |
C16 |
H162 |
86.3 |
172.0 |
| O14 |
C15 |
C16 |
H161 |
205.0 |
292.6 |
| H151 |
C15 |
O14 |
H152 |
240.8 |
239.8 |
| O14 |
C13 |
C12 |
H132 |
120.6 |
240.0 |
| O14 |
C13 |
C12 |
H131 |
239.4 |
119.9 |
| H132 |
C13 |
C12 |
H131 |
118.7 |
239.9 |
| H121 |
C12 |
C13 |
H122 |
240.5 |
239.3 |
| O14 |
C15 |
C16 |
H151 |
120.4 |
119.9 |
| O14 |
C15 |
C16 |
H152 |
239.6 |
240.0 |
| H151 |
C15 |
C16 |
H152 |
119.2 |
120.1 |
| H162 |
C16 |
C15 |
H161 |
241.3 |
239.4 |
| C02 |
C03 |
C17 |
C04 |
178.6 |
180.0 |
| C17 |
C03 |
C02 |
H021 |
0.4 |
0.0 |
| C17 |
C03 |
C04 |
C05 |
176.6 |
180.0 |
| C17 |
C03 |
C04 |
H041 |
356.7 |
0.1 |
| C17 |
C03 |
C02 |
C04 |
181.3 |
180.0 |
| C03 |
C02 |
C01 |
C06 |
3.8 |
0.0 |
| C03 |
C02 |
C01 |
H011 |
183.8 |
179.7 |
| C02 |
C03 |
C04 |
C05 |
358.0 |
360.0 |
| C02 |
C03 |
C04 |
H041 |
178.0 |
180.0 |
| C17 |
C03 |
C02 |
C01 |
180.4 |
180.0 |
| C02 |
C01 |
C06 |
C05 |
356.3 |
360.0 |
| C02 |
C01 |
C06 |
C07 |
180.1 |
179.7 |
| C06 |
C01 |
C02 |
H011 |
180.0 |
180.3 |
| N11 |
C16 |
C15 |
H151 |
205.3 |
292.4 |
| N11 |
C16 |
C15 |
H152 |
86.1 |
172.3 |
| C15 |
C16 |
N11 |
H162 |
120.7 |
119.8 |
| C15 |
C16 |
N11 |
H161 |
239.4 |
240.3 |
| N11 |
C12 |
C13 |
H132 |
205.4 |
67.6 |
| N11 |
C12 |
C13 |
H131 |
86.7 |
187.7 |
| C13 |
C12 |
N11 |
H121 |
120.3 |
119.7 |
| C13 |
C12 |
N11 |
H122 |
239.7 |
240.3 |
| C15 |
C16 |
N11 |
C12 |
338.3 |
309.5 |
| C17 |
C03 |
C04 |
C02 |
178.6 |
180.0 |
| C04 |
C03 |
C02 |
H021 |
179.2 |
180.1 |
| C05 |
C04 |
C03 |
H041 |
180.0 |
179.9 |
| C03 |
C04 |
C05 |
H051 |
182.1 |
180.0 |
| C02 |
C01 |
C06 |
H011 |
180.0 |
179.7 |
| C01 |
C06 |
C05 |
H051 |
180.8 |
180.0 |
| C01 |
C06 |
C07 |
H071 |
117.4 |
210.0 |
| C01 |
C06 |
C07 |
H072 |
237.0 |
330.0 |
| C13 |
C12 |
N11 |
C09 |
237.1 |
230.5 |
| C15 |
C16 |
N11 |
C09 |
156.8 |
129.5 |
| N11 |
C09 |
N08 |
H081 |
3.7 |
355.0 |
| O10 |
C09 |
N08 |
H081 |
192.0 |
175.0 |
| C09 |
N08 |
C07 |
H071 |
344.8 |
60.0 |
| C09 |
N08 |
C07 |
H072 |
225.3 |
300.0 |
| C03 |
C04 |
C05 |
H041 |
180.0 |
180.1 |
| C01 |
C06 |
C05 |
C04 |
0.8 |
360.0 |
| C06 |
C05 |
C04 |
H051 |
180.0 |
180.0 |
| C01 |
C06 |
C05 |
C07 |
183.7 |
179.7 |
| C05 |
C06 |
C01 |
H011 |
176.3 |
180.3 |
| C06 |
C05 |
C04 |
H041 |
182.0 |
180.0 |
| C04 |
C05 |
C06 |
H051 |
180.0 |
180.0 |
| C01 |
C06 |
C07 |
C05 |
176.1 |
180.3 |
| C07 |
C06 |
C01 |
H011 |
0.1 |
0.0 |
| C07 |
C06 |
C05 |
H051 |
357.1 |
0.3 |
| N08 |
C07 |
C06 |
H071 |
239.8 |
240.0 |
| N08 |
C07 |
C06 |
H072 |
120.2 |
120.0 |
| H071 |
C07 |
C06 |
H072 |
240.5 |
240.0 |
| C06 |
C07 |
N08 |
H071 |
120.2 |
120.1 |
| C06 |
C07 |
N08 |
H072 |
239.8 |
240.0 |
| H071 |
C07 |
N08 |
H072 |
119.5 |
120.0 |
| O14 |
C13 |
H132 |
H131 |
118.1 |
239.9 |
| H132 |
C13 |
C12 |
N11 |
205.4 |
67.6 |
| C12 |
C13 |
H132 |
H131 |
241.9 |
120.1 |
| H132 |
C13 |
C12 |
H121 |
325.7 |
187.3 |
| H132 |
C13 |
C12 |
H122 |
85.2 |
308.0 |
| O14 |
C13 |
H131 |
H132 |
241.9 |
120.1 |
| H131 |
C13 |
C12 |
N11 |
86.7 |
187.7 |
| C12 |
C13 |
H131 |
H132 |
118.1 |
239.9 |
| H131 |
C13 |
C12 |
H121 |
206.9 |
307.4 |
| H131 |
C13 |
C12 |
H122 |
326.4 |
68.1 |
| O14 |
C15 |
H151 |
C16 |
237.6 |
240.2 |
| O14 |
C15 |
H151 |
H152 |
118.8 |
120.2 |
| H151 |
C15 |
C16 |
N11 |
205.3 |
292.4 |
| C16 |
C15 |
H151 |
H152 |
241.2 |
240.0 |
| H151 |
C15 |
C16 |
H162 |
325.9 |
52.1 |
| H151 |
C15 |
C16 |
H161 |
84.6 |
172.7 |
| O14 |
C15 |
H152 |
C16 |
122.4 |
119.8 |
| O14 |
C15 |
H152 |
H151 |
241.2 |
239.8 |
| H152 |
C15 |
C16 |
N11 |
86.1 |
172.3 |
| C16 |
C15 |
H152 |
H151 |
118.8 |
120.0 |
| H152 |
C15 |
C16 |
H162 |
206.7 |
292.0 |
| H152 |
C15 |
C16 |
H161 |
325.4 |
52.6 |
| C02 |
C01 |
H011 |
C06 |
180.0 |
180.3 |
| H011 |
C01 |
C06 |
C05 |
176.3 |
180.3 |
| H011 |
C01 |
C06 |
C07 |
0.1 |
0.0 |
| H021 |
C02 |
C03 |
C04 |
179.2 |
180.1 |
| H021 |
C02 |
C01 |
C06 |
183.8 |
180.0 |
| H021 |
C02 |
C01 |
H011 |
3.8 |
359.6 |
| C03 |
C04 |
H041 |
C05 |
180.0 |
179.9 |
| H041 |
C04 |
C05 |
H051 |
2.0 |
360.0 |
| H051 |
C05 |
C04 |
H041 |
2.0 |
360.0 |
| C06 |
C07 |
H071 |
H072 |
119.3 |
120.0 |
| N08 |
C07 |
H071 |
H072 |
240.7 |
240.0 |
| C06 |
C07 |
H072 |
H071 |
240.6 |
239.9 |
| N08 |
C07 |
H072 |
H071 |
119.3 |
120.0 |
| H081 |
N08 |
C07 |
H071 |
164.8 |
240.0 |
| H081 |
N08 |
C07 |
H072 |
45.3 |
120.0 |
| C13 |
C12 |
H121 |
N11 |
238.3 |
241.1 |
| H121 |
C12 |
C13 |
H132 |
325.7 |
187.3 |
| H121 |
C12 |
C13 |
H131 |
206.9 |
307.4 |
| C13 |
C12 |
H121 |
H122 |
119.2 |
120.6 |
| C13 |
C12 |
H122 |
N11 |
121.7 |
118.8 |
| H122 |
C12 |
C13 |
H132 |
85.2 |
308.0 |
| H122 |
C12 |
C13 |
H131 |
326.4 |
68.1 |
| C13 |
C12 |
H122 |
H121 |
240.8 |
239.4 |
| C15 |
C16 |
H162 |
N11 |
236.0 |
241.0 |
| H162 |
C16 |
C15 |
H151 |
325.9 |
52.1 |
| H162 |
C16 |
C15 |
H152 |
206.7 |
292.0 |
| C15 |
C16 |
H162 |
H161 |
118.0 |
120.5 |
| C15 |
C16 |
H161 |
N11 |
124.0 |
118.9 |
| H161 |
C16 |
C15 |
H151 |
84.6 |
172.7 |
| H161 |
C16 |
C15 |
H152 |
325.4 |
52.6 |
| C15 |
C16 |
H161 |
H162 |
242.0 |
239.4 |