PDB Chemical Component JFY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JFY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O13 |
S12 |
1.391 |
1.420 |
| O14 |
S12 |
1.368 |
1.421 |
| S12 |
C15 |
1.582 |
1.814 |
| S12 |
N11 |
1.546 |
1.657 |
| N11 |
C08 |
1.432 |
1.397 |
| C09 |
C08 |
1.384 |
1.390 |
| C09 |
C10 |
1.362 |
1.381 |
| C08 |
C07 |
1.351 |
1.389 |
| C10 |
C05 |
1.382 |
1.383 |
| C07 |
C06 |
1.317 |
1.380 |
| C05 |
C06 |
1.333 |
1.383 |
| C05 |
C03 |
1.491 |
1.507 |
| C04 |
C03 |
1.502 |
1.529 |
| C03 |
C02 |
1.445 |
1.530 |
| C02 |
C01 |
1.420 |
1.530 |
| C10 |
H101 |
1.080 |
1.080 |
| C15 |
H152 |
1.100 |
1.089 |
| C15 |
H153 |
1.100 |
1.089 |
| C15 |
H151 |
1.100 |
1.091 |
| C01 |
H013 |
1.100 |
1.090 |
| C01 |
H011 |
1.100 |
1.090 |
| C01 |
H012 |
1.099 |
1.090 |
| C02 |
H022 |
1.100 |
1.090 |
| C02 |
H021 |
1.100 |
1.090 |
| C03 |
H031 |
1.100 |
1.090 |
| C04 |
H043 |
1.100 |
1.090 |
| C04 |
H042 |
1.100 |
1.090 |
| C04 |
H041 |
1.100 |
1.090 |
| C06 |
H061 |
1.080 |
1.081 |
| C07 |
H071 |
1.080 |
1.081 |
| C09 |
H091 |
1.080 |
1.079 |
| N11 |
H111 |
1.000 |
0.970 |
Bond Angles for JFY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S12 |
C15 |
H152 |
109.5 |
109.5 |
| S12 |
C15 |
H153 |
109.4 |
109.5 |
| S12 |
C15 |
H151 |
109.5 |
109.4 |
| S12 |
N11 |
H111 |
106.3 |
120.0 |
| C09 |
C10 |
H101 |
120.1 |
120.0 |
| C08 |
C07 |
H071 |
119.6 |
120.0 |
| C10 |
C05 |
C06 |
118.4 |
120.2 |
| C10 |
C05 |
C03 |
123.7 |
119.9 |
| C05 |
C10 |
H101 |
120.1 |
120.0 |
| C07 |
C06 |
H061 |
118.6 |
120.0 |
| C05 |
C06 |
H061 |
118.6 |
120.0 |
| C05 |
C03 |
H031 |
109.8 |
109.5 |
| C04 |
C03 |
H031 |
109.7 |
109.5 |
| C03 |
C02 |
H022 |
108.3 |
109.5 |
| C03 |
C02 |
H021 |
108.3 |
109.5 |
| C02 |
C01 |
H013 |
109.5 |
109.5 |
| C02 |
C01 |
H011 |
109.5 |
109.4 |
| C02 |
C01 |
H012 |
109.5 |
109.5 |
| H152 |
C15 |
H153 |
109.5 |
109.5 |
| H152 |
C15 |
H151 |
109.4 |
109.4 |
| H153 |
C15 |
H151 |
109.5 |
109.5 |
| H013 |
C01 |
H011 |
109.5 |
109.5 |
| H013 |
C01 |
H012 |
109.5 |
109.4 |
| H011 |
C01 |
H012 |
109.4 |
109.5 |
| H022 |
C02 |
H021 |
109.5 |
109.4 |
| H043 |
C04 |
H042 |
109.4 |
109.5 |
| H043 |
C04 |
H041 |
109.5 |
109.5 |
| H042 |
C04 |
H041 |
109.5 |
109.5 |
Torsion Angles for JFY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O13 |
S12 |
C15 |
H152 |
180.0 |
173.3 |
| O13 |
S12 |
C15 |
H153 |
300.0 |
293.4 |
| O13 |
S12 |
C15 |
H151 |
60.0 |
53.4 |
| O13 |
S12 |
N11 |
H111 |
20.5 |
0.3 |
| O14 |
S12 |
C15 |
H152 |
50.0 |
310.1 |
| O14 |
S12 |
C15 |
H153 |
170.0 |
70.2 |
| O14 |
S12 |
C15 |
H151 |
290.0 |
190.1 |
| O14 |
S12 |
N11 |
H111 |
155.8 |
232.5 |
| H152 |
C15 |
S12 |
H153 |
240.0 |
239.9 |
| H152 |
C15 |
S12 |
H151 |
120.0 |
120.0 |
| H153 |
C15 |
S12 |
H151 |
240.0 |
240.0 |
| N11 |
S12 |
C15 |
H152 |
290.4 |
61.7 |
| N11 |
S12 |
C15 |
H153 |
50.4 |
181.8 |
| N11 |
S12 |
C15 |
H151 |
170.4 |
301.7 |
| N11 |
C08 |
C07 |
H071 |
360.0 |
360.0 |
| C08 |
C09 |
C10 |
H101 |
182.7 |
179.7 |
| C09 |
C08 |
C07 |
H071 |
180.2 |
179.8 |
| C05 |
C10 |
C09 |
H101 |
180.0 |
179.8 |
| C08 |
C07 |
C06 |
H061 |
179.4 |
180.0 |
| C09 |
C10 |
C05 |
H101 |
180.0 |
180.2 |
| C10 |
C05 |
C06 |
H061 |
182.1 |
180.0 |
| C10 |
C05 |
C03 |
H031 |
0.1 |
359.9 |
| C05 |
C06 |
C07 |
H061 |
180.0 |
179.9 |
| C10 |
C05 |
C06 |
C03 |
181.3 |
180.0 |
| C06 |
C05 |
C10 |
H101 |
176.8 |
180.0 |
| C07 |
C06 |
C05 |
H061 |
180.0 |
180.1 |
| C06 |
C05 |
C03 |
H031 |
181.6 |
180.0 |
| C10 |
C05 |
C03 |
C06 |
178.6 |
180.0 |
| C03 |
C05 |
C10 |
H101 |
358.2 |
0.1 |
| C04 |
C03 |
C05 |
H031 |
120.5 |
120.1 |
| C05 |
C03 |
C02 |
H022 |
211.6 |
54.9 |
| C05 |
C03 |
C02 |
H021 |
330.2 |
295.0 |
| C10 |
C05 |
C03 |
C04 |
120.6 |
120.0 |
| C05 |
C03 |
C04 |
H031 |
239.5 |
240.0 |
| C04 |
C03 |
C02 |
H022 |
330.7 |
174.9 |
| C04 |
C03 |
C02 |
H021 |
89.3 |
55.0 |
| C10 |
C05 |
C03 |
C02 |
237.7 |
240.0 |
| C03 |
C02 |
C01 |
H013 |
180.0 |
299.9 |
| C03 |
C02 |
C01 |
H011 |
300.0 |
60.0 |
| C03 |
C02 |
C01 |
H012 |
60.0 |
180.0 |
| H022 |
C02 |
C03 |
H021 |
241.4 |
119.9 |
| H013 |
C01 |
C02 |
H011 |
240.0 |
239.9 |
| H013 |
C01 |
C02 |
H012 |
120.0 |
120.0 |
| H011 |
C01 |
C02 |
H012 |
240.0 |
240.0 |
| H101 |
C10 |
C05 |
C06 |
176.8 |
180.0 |
| H101 |
C10 |
C05 |
C03 |
358.2 |
0.1 |
| S12 |
C15 |
H152 |
H153 |
120.0 |
120.0 |
| S12 |
C15 |
H152 |
H151 |
240.0 |
240.1 |
| H153 |
C15 |
H152 |
H151 |
120.0 |
120.0 |
| S12 |
C15 |
H153 |
H152 |
240.0 |
239.9 |
| S12 |
C15 |
H153 |
H151 |
120.0 |
120.0 |
| H152 |
C15 |
H153 |
H151 |
240.0 |
240.0 |
| S12 |
C15 |
H151 |
H152 |
120.0 |
120.0 |
| S12 |
C15 |
H151 |
H153 |
240.0 |
240.0 |
| H152 |
C15 |
H151 |
H153 |
120.0 |
120.0 |
| C02 |
C01 |
H013 |
H011 |
120.0 |
120.0 |
| C02 |
C01 |
H013 |
H012 |
240.0 |
240.0 |
| H011 |
C01 |
H013 |
H012 |
120.0 |
120.0 |
| C02 |
C01 |
H011 |
H013 |
240.0 |
240.0 |
| C02 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
| H013 |
C01 |
H011 |
H012 |
240.0 |
240.0 |
| C02 |
C01 |
H012 |
H013 |
120.1 |
120.0 |
| C02 |
C01 |
H012 |
H011 |
240.0 |
240.0 |
| H013 |
C01 |
H012 |
H011 |
120.0 |
120.0 |
| C03 |
C02 |
H022 |
H021 |
117.9 |
240.0 |
| H022 |
C02 |
C01 |
H013 |
59.3 |
60.0 |
| H022 |
C02 |
C01 |
H011 |
179.4 |
180.0 |
| H022 |
C02 |
C01 |
H012 |
299.3 |
300.0 |
| C03 |
C02 |
H021 |
H022 |
242.2 |
120.0 |
| H021 |
C02 |
C01 |
H013 |
300.7 |
180.0 |
| H021 |
C02 |
C01 |
H011 |
60.7 |
300.0 |
| H021 |
C02 |
C01 |
H012 |
180.7 |
60.0 |
| H031 |
C03 |
C02 |
H022 |
89.5 |
295.0 |
| H031 |
C03 |
C02 |
H021 |
208.1 |
175.0 |
| H043 |
C04 |
C03 |
H031 |
300.6 |
180.0 |
| H042 |
C04 |
H043 |
H041 |
120.0 |
120.0 |
| H042 |
C04 |
C03 |
H031 |
60.5 |
300.1 |
| H043 |
C04 |
H042 |
H041 |
240.0 |
240.0 |
| H041 |
C04 |
C03 |
H031 |
180.5 |
60.0 |
| H043 |
C04 |
H041 |
H042 |
120.0 |
120.0 |
| H071 |
C07 |
C06 |
H061 |
359.4 |
0.0 |
| H091 |
C09 |
C10 |
H101 |
2.8 |
0.2 |