PDB Chemical Component JFM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JFM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O04 |
S02 |
1.371 |
1.421 |
N05 |
S02 |
1.600 |
1.656 |
N05 |
C06 |
1.526 |
1.464 |
S02 |
O03 |
1.360 |
1.421 |
S02 |
C01 |
1.649 |
1.814 |
C07 |
C06 |
1.611 |
1.531 |
C07 |
C08 |
1.521 |
1.507 |
C09 |
C08 |
1.370 |
1.383 |
C09 |
C10 |
1.381 |
1.382 |
C08 |
C13 |
1.363 |
1.383 |
C10 |
C11 |
1.382 |
1.383 |
C13 |
C12 |
1.389 |
1.382 |
C11 |
C12 |
1.377 |
1.382 |
C10 |
H101 |
1.080 |
1.080 |
C13 |
H131 |
1.080 |
1.080 |
C01 |
H011 |
1.100 |
1.090 |
C01 |
H012 |
1.100 |
1.090 |
C01 |
H013 |
1.100 |
1.091 |
N05 |
H051 |
1.001 |
0.970 |
C06 |
H061 |
1.100 |
1.090 |
C06 |
H062 |
1.100 |
1.090 |
C07 |
H071 |
1.100 |
1.090 |
C07 |
H072 |
1.100 |
1.090 |
C09 |
H091 |
1.080 |
1.080 |
C11 |
H111 |
1.080 |
1.081 |
C12 |
H121 |
1.080 |
1.080 |
Bond Angles for JFM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C06 |
N05 |
H051 |
105.6 |
120.0 |
N05 |
C06 |
H061 |
107.9 |
109.5 |
N05 |
C06 |
H062 |
107.9 |
109.5 |
S02 |
C01 |
H011 |
109.5 |
109.5 |
S02 |
C01 |
H012 |
109.5 |
109.5 |
S02 |
C01 |
H013 |
109.5 |
109.5 |
C07 |
C06 |
H061 |
107.9 |
109.4 |
C07 |
C06 |
H062 |
107.9 |
109.4 |
C08 |
C07 |
H071 |
109.2 |
109.5 |
C08 |
C07 |
H072 |
109.2 |
109.5 |
C09 |
C10 |
C11 |
119.4 |
120.0 |
C09 |
C10 |
H101 |
120.3 |
120.0 |
C08 |
C13 |
C12 |
120.5 |
120.0 |
C08 |
C13 |
H131 |
119.7 |
120.0 |
C10 |
C11 |
C12 |
118.8 |
120.0 |
C11 |
C10 |
H101 |
120.3 |
120.0 |
C10 |
C11 |
H111 |
120.6 |
120.0 |
C13 |
C12 |
C11 |
120.7 |
120.1 |
C12 |
C13 |
H131 |
119.7 |
120.1 |
C13 |
C12 |
H121 |
119.6 |
120.0 |
C12 |
C11 |
H111 |
120.6 |
120.0 |
C11 |
C12 |
H121 |
119.6 |
120.0 |
H011 |
C01 |
H012 |
109.5 |
109.5 |
H011 |
C01 |
H013 |
109.4 |
109.5 |
H012 |
C01 |
H013 |
109.5 |
109.5 |
H061 |
C06 |
H062 |
109.5 |
109.5 |
H071 |
C07 |
H072 |
109.5 |
109.5 |
Torsion Angles for JFM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O04 |
S02 |
C01 |
H011 |
180.0 |
188.3 |
O04 |
S02 |
C01 |
H012 |
300.0 |
308.4 |
O04 |
S02 |
C01 |
H013 |
60.0 |
68.3 |
N05 |
S02 |
C01 |
H011 |
291.7 |
300.0 |
N05 |
S02 |
C01 |
H012 |
51.7 |
60.0 |
N05 |
S02 |
C01 |
H013 |
171.7 |
180.0 |
C07 |
C06 |
N05 |
H061 |
239.1 |
240.0 |
C07 |
C06 |
N05 |
H062 |
120.9 |
119.9 |
H061 |
C06 |
N05 |
H062 |
241.8 |
239.9 |
O03 |
S02 |
C01 |
H011 |
50.9 |
51.6 |
O03 |
S02 |
C01 |
H012 |
170.9 |
171.6 |
O03 |
S02 |
C01 |
H013 |
290.9 |
291.6 |
H011 |
C01 |
S02 |
H012 |
240.0 |
239.9 |
H011 |
C01 |
S02 |
H013 |
120.0 |
120.0 |
H012 |
C01 |
S02 |
H013 |
240.0 |
240.0 |
C07 |
C06 |
N05 |
H051 |
32.4 |
345.0 |
N05 |
C06 |
C07 |
H061 |
120.9 |
120.0 |
N05 |
C06 |
C07 |
H062 |
239.1 |
240.0 |
H061 |
C06 |
C07 |
H062 |
118.2 |
120.0 |
C08 |
C07 |
C06 |
H061 |
99.1 |
60.0 |
C08 |
C07 |
C06 |
H062 |
340.9 |
300.0 |
C07 |
C08 |
C13 |
C12 |
176.9 |
179.9 |
C07 |
C08 |
C13 |
H131 |
356.8 |
0.6 |
H071 |
C07 |
C08 |
H072 |
119.7 |
120.1 |
C09 |
C08 |
C07 |
H071 |
333.2 |
150.9 |
C09 |
C08 |
C07 |
H072 |
213.5 |
30.8 |
C08 |
C09 |
C10 |
C11 |
0.1 |
0.1 |
C08 |
C09 |
C10 |
H101 |
180.1 |
179.8 |
C09 |
C08 |
C13 |
C12 |
0.5 |
359.1 |
C09 |
C08 |
C13 |
H131 |
180.5 |
179.8 |
C09 |
C10 |
C11 |
C12 |
359.5 |
359.7 |
C11 |
C10 |
C09 |
H101 |
180.0 |
180.3 |
C09 |
C10 |
C11 |
H111 |
179.5 |
179.6 |
C08 |
C13 |
C12 |
C11 |
359.1 |
0.7 |
C12 |
C13 |
C08 |
H131 |
180.0 |
179.4 |
C08 |
C13 |
C12 |
H121 |
179.1 |
180.0 |
C09 |
C10 |
C11 |
H101 |
180.0 |
179.7 |
C13 |
C12 |
C11 |
C10 |
0.8 |
359.9 |
C12 |
C11 |
C10 |
H111 |
180.0 |
180.1 |
C10 |
C11 |
C12 |
H121 |
180.9 |
180.6 |
C08 |
C13 |
C12 |
H131 |
180.0 |
180.6 |
C10 |
C11 |
C12 |
C13 |
0.8 |
359.9 |
C13 |
C12 |
C11 |
H111 |
180.8 |
180.0 |
C11 |
C12 |
C13 |
H121 |
180.0 |
180.7 |
C12 |
C11 |
C10 |
H101 |
179.6 |
180.0 |
C10 |
C11 |
C12 |
H111 |
180.0 |
179.9 |
C11 |
C12 |
C13 |
H131 |
179.1 |
180.0 |
C13 |
C12 |
C11 |
H121 |
180.0 |
179.3 |
C09 |
C10 |
H101 |
C11 |
180.0 |
180.3 |
H101 |
C10 |
C11 |
C12 |
179.6 |
180.0 |
H101 |
C10 |
C11 |
H111 |
359.6 |
359.9 |
C08 |
C13 |
H131 |
C12 |
180.0 |
179.4 |
H131 |
C13 |
C12 |
C11 |
179.1 |
180.0 |
H131 |
C13 |
C12 |
H121 |
359.1 |
359.3 |
S02 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
S02 |
C01 |
H011 |
H013 |
240.0 |
240.0 |
H012 |
C01 |
H011 |
H013 |
120.0 |
120.0 |
S02 |
C01 |
H012 |
H011 |
239.9 |
240.0 |
S02 |
C01 |
H012 |
H013 |
120.0 |
120.0 |
H011 |
C01 |
H012 |
H013 |
240.0 |
240.0 |
S02 |
C01 |
H013 |
H011 |
120.0 |
120.0 |
S02 |
C01 |
H013 |
H012 |
240.0 |
240.0 |
H011 |
C01 |
H013 |
H012 |
120.0 |
120.1 |
H051 |
N05 |
C06 |
H061 |
153.3 |
104.9 |
H051 |
N05 |
C06 |
H062 |
271.5 |
225.0 |
H061 |
C06 |
N05 |
H051 |
153.3 |
104.9 |
N05 |
C06 |
H061 |
H062 |
117.2 |
120.1 |
C07 |
C06 |
H061 |
H062 |
242.8 |
240.1 |
H062 |
C06 |
N05 |
H051 |
271.5 |
225.0 |
N05 |
C06 |
H062 |
H061 |
242.7 |
239.9 |
C07 |
C06 |
H062 |
H061 |
117.2 |
119.9 |
H071 |
C07 |
C06 |
H061 |
219.3 |
180.0 |
H071 |
C07 |
C06 |
H062 |
101.1 |
60.0 |
C08 |
C07 |
H071 |
H072 |
240.5 |
239.9 |
H072 |
C07 |
C06 |
H061 |
338.9 |
300.0 |
H072 |
C07 |
C06 |
H062 |
220.7 |
180.0 |
C08 |
C07 |
H072 |
H071 |
119.5 |
120.1 |
H091 |
C09 |
C10 |
C11 |
180.2 |
179.9 |
H091 |
C09 |
C10 |
H101 |
0.1 |
359.6 |
C10 |
C11 |
H111 |
C12 |
180.0 |
180.1 |
H111 |
C11 |
C10 |
H101 |
359.6 |
359.9 |
H111 |
C11 |
C12 |
H121 |
0.9 |
0.7 |
C13 |
C12 |
H121 |
C11 |
180.0 |
180.7 |
H121 |
C12 |
C13 |
H131 |
359.1 |
359.3 |
H121 |
C12 |
C11 |
H111 |
0.9 |
0.7 |