PDB Chemical Component JE2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JE2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O2 1.364 1.359
C1 C3 1.426 1.388
C1 C7 1.434 1.385
O2 HO2 0.950 0.967
C3 C4 1.366 1.382
C3 HC3 1.080 1.081
C4 C5 1.425 1.380
C4 HC4 1.080 1.080
C5 C6 1.419 1.395
C5 HC5 1.080 1.081
C6 C7 1.427 1.395
C6 C9 1.491 1.478
C7 C8 1.525 1.507
C8 HC81 1.100 1.090
C8 HC82 1.100 1.090
C8 HC83 1.100 1.089
C9 O10 1.306 1.215
C9 N11 1.323 1.348
N11 C12 1.510 1.465
N11 H11 1.000 0.970
C12 C13 1.591 1.530
C12 C20 1.549 1.531
C12 H12 1.100 1.090
C13 C14 1.509 1.506
C13 H131 1.101 1.090
C13 H132 1.100 1.091
C14 C15 1.430 1.383
C14 C19 1.412 1.383
C15 C16 1.432 1.381
C15 H15 1.080 1.080
C16 C17 1.404 1.382
C16 H16 1.080 1.081
C17 C18 1.399 1.382
C17 H17 1.080 1.080
C18 C19 1.386 1.382
C18 H18 1.080 1.080
C19 H19 1.080 1.080
C20 O21 1.426 1.429
C20 C22 1.528 1.506
C20 H20 1.100 1.090
O21 H21 0.951 0.967
C22 O23 1.249 1.214
C22 N24 1.373 1.348
N24 C25 1.510 1.475
N24 C30 1.480 1.455
C25 S26 1.813 1.841
C25 H251 1.100 1.090
C25 H252 1.100 1.090
S26 C27 1.831 1.843
C27 C28 1.530 1.530
C27 C29 1.540 1.530
C27 C30 1.557 1.546
C28 H281 1.100 1.090
C28 H282 1.099 1.090
C28 H283 1.100 1.091
C29 H291 1.100 1.090
C29 H292 1.100 1.090
C29 H293 1.099 1.090
C30 C31 1.543 1.507
C30 H30 1.100 1.090
C31 O32 1.267 1.212
C31 N33 1.401 1.348
N33 C34 1.483 1.466
N33 H33 1.000 0.970
C34 C35 1.535 1.507
C34 H341 1.100 1.089
C34 H342 1.100 1.090
C35 C36 1.412 1.381
C35 C40 1.390 1.383
C36 C37 1.399 1.383
C36 C41 1.479 1.508
C37 C38 1.418 1.383
C37 H37 1.080 1.080
C38 C39 1.366 1.383
C38 H38 1.080 1.080
C39 C40 1.414 1.383
C39 H39 1.080 1.079
C40 H40 1.080 1.079
C41 H411 1.100 1.090
C41 H412 1.101 1.090
C41 H413 1.100 1.090

Bond Angles for JE2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 O2 HO2 109.5 114.0
C1 C3 HC3 120.2 119.9
C1 C7 C8 118.9 120.1
C4 C3 HC3 120.2 119.9
C3 C4 C5 120.8 120.2
C3 C4 HC4 119.6 119.9
C5 C4 HC4 119.6 119.9
C4 C5 C6 119.9 120.0
C4 C5 HC5 120.1 120.0
C6 C5 HC5 120.0 120.0
C5 C6 C7 120.5 119.8
C5 C6 C9 117.9 120.2
C7 C6 C9 121.6 120.1
C6 C7 C8 124.0 120.1
C6 C9 O10 120.7 120.0
C6 C9 N11 116.3 120.0
C7 C8 HC81 109.5 109.5
C7 C8 HC82 109.4 109.4
C7 C8 HC83 109.5 109.5
HC81 C8 HC82 109.5 109.4
HC81 C8 HC83 109.5 109.5
HC82 C8 HC83 109.5 109.4
O10 C9 N11 122.9 120.0
C9 N11 C12 120.2 120.0
C9 N11 H11 119.9 120.0
C12 N11 H11 119.9 120.0
N11 C12 C13 106.9 109.5
N11 C12 C20 106.4 109.5
N11 C12 H12 114.3 109.5
C12 C13 H131 108.6 109.5
C12 C13 H132 108.6 109.4
C12 C20 O21 110.8 109.4
C12 C20 H20 108.7 109.5
C13 C14 C15 119.4 120.0
C13 C14 C19 121.6 120.0
H131 C13 H132 110.3 109.4
C15 C14 C19 118.8 120.0
C14 C15 C16 117.8 120.0
C14 C15 H15 121.1 120.0
C14 C19 H19 119.0 119.9
C16 C15 H15 121.1 120.0
C15 C16 H16 118.9 120.0
C16 C17 C18 118.5 120.0
C16 C17 H17 120.8 120.0
C18 C17 H17 120.8 120.0
C17 C18 C19 120.7 120.0
C17 C18 H18 119.6 120.0
C18 C19 H19 119.0 120.1
O21 C20 H20 109.6 109.5
C20 O21 H21 109.5 114.0
C20 C22 N24 117.1 120.0
O23 C22 N24 118.7 120.0
C22 N24 C25 123.1 122.4
C22 N24 C30 120.6 122.4
C30 N24 C25 116.2 115.2
N24 C25 S26 105.1 102.6
N24 C25 H251 111.0 110.8
N24 C25 H252 111.0 110.8
N24 C30 H30 114.1 108.7
S26 C25 H251 111.0 110.7
S26 C25 H252 111.0 110.8
H251 C25 H252 107.9 110.8
C28 C27 C29 108.6 110.9
C27 C28 H281 109.5 109.5
C27 C28 H282 109.4 109.5
C27 C28 H283 109.5 109.4
C27 C29 H291 109.5 109.5
C27 C29 H292 109.4 109.5
C27 C29 H293 109.5 109.5
C27 C30 H30 109.1 108.6
H281 C28 H282 109.5 109.5
H281 C28 H283 109.5 109.4
H282 C28 H283 109.5 109.5
H291 C29 H292 109.5 109.4
H291 C29 H293 109.5 109.5
H292 C29 H293 109.5 109.4
C30 C31 N33 113.8 120.0
O32 C31 N33 122.4 120.0
C31 N33 C34 121.4 120.0
C31 N33 H33 119.3 120.0
C34 N33 H33 119.3 120.0
N33 C34 C35 109.9 109.5
N33 C34 H341 109.3 109.5
N33 C34 H342 109.3 109.4
C35 C34 H341 109.3 109.5
C35 C34 H342 109.3 109.5
C34 C35 C36 121.7 120.0
C34 C35 C40 117.9 120.0
H341 C34 H342 109.6 109.4
C36 C35 C40 120.2 120.0
C35 C36 C37 118.4 120.0
C35 C36 C41 121.3 120.0
C35 C40 C39 121.4 120.0
C35 C40 H40 119.3 120.0
C37 C36 C41 120.2 120.0
C36 C37 C38 120.1 120.0
C36 C37 H37 120.0 120.0
C36 C41 H411 109.5 109.4
C36 C41 H412 109.5 109.5
C36 C41 H413 109.5 109.4
C38 C37 H37 119.9 120.0
C37 C38 C39 121.7 120.0
C37 C38 H38 119.1 120.0
C39 C38 H38 119.1 120.1
C38 C39 C40 118.1 120.0
C38 C39 H39 120.9 120.0
C40 C39 H39 121.0 120.0
C39 C40 H40 119.3 120.0
H411 C41 H412 109.5 109.5
H411 C41 H413 109.5 109.5
H412 C41 H413 109.5 109.5

Torsion Angles for JE2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C1 C3 HC3 355.7 0.0
O2 C1 C7 C8 359.6 360.0
C4 C3 C1 HC3 180.0 180.0
C1 C3 C4 HC4 182.5 180.1
C7 C1 C3 HC3 183.4 180.2
C1 C7 C6 C9 183.5 180.3
C6 C7 C1 C8 182.5 179.8
C1 C7 C8 HC81 91.2 96.8
C1 C7 C8 HC82 211.2 216.8
C1 C7 C8 HC83 331.2 336.7
C1 C3 C4 HC3 180.0 180.0
C5 C4 C3 HC4 180.0 180.0
C3 C4 C5 C6 353.9 359.9
C3 C4 C5 HC5 173.9 180.0
HC3 C3 C4 C5 182.5 180.0
HC3 C3 C4 HC4 2.5 0.0
C5 C4 C3 HC3 182.5 180.0
C3 C4 C5 HC4 180.0 180.0
C6 C5 C4 HC5 180.0 179.9
C4 C5 C6 C7 3.9 359.8
C4 C5 C6 C9 182.2 180.0
HC4 C4 C3 HC3 2.5 0.0
C3 C4 HC4 C5 180.0 180.0
HC4 C4 C5 C6 173.9 179.9
HC4 C4 C5 HC5 353.8 360.0
C6 C5 C4 HC4 173.9 179.9
C4 C5 C6 HC5 180.0 180.1
C7 C6 C5 C9 181.7 179.8
C5 C6 C7 C8 184.3 180.2
C5 C6 C9 O10 233.5 186.2
C5 C6 C9 N11 50.1 6.2
HC5 C5 C4 HC4 353.8 360.0
C4 C5 HC5 C6 180.0 179.9
HC5 C5 C6 C7 183.9 179.8
HC5 C5 C6 C9 2.2 359.9
C1 C7 C6 C8 177.4 180.2
C7 C6 C5 HC5 183.9 179.8
C5 C6 C7 C9 178.3 180.2
C7 C6 C9 O10 51.8 6.4
C7 C6 C9 N11 228.4 186.3
C6 C7 C8 HC81 268.6 277.1
C6 C7 C8 HC82 28.6 37.0
C6 C7 C8 HC83 148.5 157.0
C9 C6 C5 HC5 2.2 359.9
C5 C6 C9 C7 181.7 179.8
C9 C6 C7 C8 6.1 0.1
O10 C9 C6 N11 183.4 180.0
C6 C9 N11 C12 183.2 180.0
C6 C9 N11 H11 3.2 0.0
C8 C7 C6 C9 6.1 0.1
HC81 C8 C7 HC82 240.0 240.1
HC81 C8 C7 HC83 120.0 120.1
HC82 C8 C7 HC83 240.0 240.0
C7 C8 HC81 HC82 120.0 119.9
C7 C8 HC81 HC83 240.0 239.9
HC82 C8 HC81 HC83 120.0 120.0
C7 C8 HC82 HC81 240.0 240.0
C7 C8 HC82 HC83 120.0 120.0
HC81 C8 HC82 HC83 240.0 239.9
C7 C8 HC83 HC81 120.1 120.1
C7 C8 HC83 HC82 240.0 240.1
HC81 C8 HC83 HC82 120.0 120.0
C6 C9 O10 N11 176.4 180.0
O10 C9 N11 C12 359.7 360.0
O10 C9 N11 H11 179.7 180.0
C6 C9 N11 O10 183.5 180.0
C12 N11 C9 H11 180.0 180.0
C9 N11 C12 C13 138.9 85.0
C9 N11 C12 C20 260.0 205.0
C9 N11 C12 H12 19.6 325.0
C9 N11 C12 H11 180.0 180.0
N11 C12 C13 H131 70.6 55.0
N11 C12 C13 H132 190.5 175.0
N11 C12 C20 O21 281.4 295.0
N11 C12 C20 H20 42.0 55.0
C9 N11 H11 C12 180.0 180.0
H11 N11 C12 C13 318.9 265.0
H11 N11 C12 C20 80.0 25.0
H11 N11 C12 H12 199.6 144.9
C13 C12 N11 H11 318.9 265.0
N11 C12 C13 C20 116.8 120.0
N11 C12 C13 H12 236.6 239.9
C13 C12 C20 O21 38.5 55.0
C13 C12 C20 H20 159.1 175.0
C12 C13 C14 C15 102.6 90.0
C12 C13 C14 C19 287.9 269.8
H131 C13 C12 H132 240.0 240.1
C20 C12 N11 H11 80.0 25.0
N11 C12 C20 C13 242.9 240.0
N11 C12 C20 H12 123.4 120.0
O21 C20 C12 H20 239.4 240.0
C12 C20 O21 H21 256.3 300.0
C12 C20 C22 N24 266.2 294.9
H12 C12 N11 H11 199.6 144.9
N11 C12 H12 C13 118.8 120.0
N11 C12 H12 C20 241.5 240.0
H12 C12 C13 H131 194.0 175.1
H12 C12 C13 H132 314.0 295.0
H12 C12 C20 O21 158.0 175.0
H12 C12 C20 H20 278.6 295.0
N11 C12 C13 C14 310.6 295.0
C15 C14 C13 C19 174.7 180.2
C13 C14 C15 C16 184.8 180.0
C13 C14 C15 H15 4.8 360.0
C13 C14 C19 H19 356.2 360.0
C12 C13 H131 H132 118.9 119.9
H131 C13 C14 C15 342.7 330.0
H131 C13 C14 C19 167.9 149.7
C12 C13 H132 H131 241.1 240.0
H132 C13 C14 C15 222.6 210.0
H132 C13 C14 C19 47.9 29.8
C13 C14 C15 C19 185.1 179.8
C15 C14 C19 H19 181.4 179.8
C16 C15 C14 H15 180.0 180.0
C14 C15 C16 H16 179.9 180.0
C13 C14 C19 C15 174.8 180.2
C19 C14 C15 C16 359.7 0.2
C19 C14 C15 H15 179.7 180.2
C17 C18 C19 C14 357.9 0.4
C18 C19 C14 H19 180.0 179.8
C16 C15 C14 C19 359.7 0.2
C14 C15 C16 H15 180.0 180.0
C15 C16 C17 C18 359.5 360.0
C15 C16 C17 H17 179.5 180.0
H15 C15 C14 C19 179.7 180.2
C14 C15 H15 C16 180.0 180.0
H15 C15 C16 H16 359.9 0.0
C14 C15 C16 C17 359.8 0.0
C18 C17 C16 H17 180.0 180.0
C16 C17 C18 C19 1.6 359.8
C16 C17 C18 H18 181.6 180.0
H16 C16 C15 H15 359.9 0.0
H16 C16 C17 C18 179.5 180.0
H16 C16 C17 H17 359.5 0.0
C16 C17 C18 H17 180.0 180.0
C17 C18 C19 H19 177.9 180.2
C16 C17 H17 C18 180.0 180.0
H17 C17 C18 C19 181.6 179.8
H17 C17 C18 H18 1.6 359.9
C14 C19 C18 H19 180.0 180.2
C19 C18 C17 H17 181.6 179.8
C17 C18 C19 H18 180.0 180.2
H18 C18 C17 H17 1.6 359.9
C17 C18 H18 C19 180.0 179.8
H18 C18 C19 H19 357.9 0.0
C12 C20 O21 H20 120.0 120.0
O21 C20 C22 N24 146.6 175.0
O23 C22 C20 N24 177.5 180.1
C20 C22 N24 C25 358.7 0.1
C20 C22 N24 C30 175.5 179.7
C12 C20 H20 O21 238.7 240.0
H20 C20 O21 H21 136.3 180.0
H20 C20 C22 N24 26.2 54.9
H21 O21 C20 H20 136.3 180.0
C20 C22 O23 N24 182.5 179.9
O23 C22 N24 C25 181.0 180.0
O23 C22 N24 C30 357.8 359.7
C30 N24 C22 C25 176.8 179.6
C22 N24 C25 S26 168.8 204.8
C22 N24 C25 H251 288.8 323.0
C22 N24 C25 H252 48.8 86.5
C22 N24 C30 H30 42.7 58.0
C22 N24 C25 C30 176.9 179.7
C25 N24 C30 H30 219.7 237.7
S26 C25 N24 H251 240.0 241.8
S26 C25 N24 H252 120.0 118.3
H251 C25 N24 H252 240.0 236.5
C22 N24 C30 C25 183.0 180.3
C30 N24 C25 S26 351.9 25.1
C30 N24 C25 H251 111.9 143.4
C30 N24 C25 H252 231.9 266.8
C27 C30 N24 H30 119.5 120.7
N24 C30 C31 N33 151.2 161.5
N24 C25 S26 H251 120.0 118.3
N24 C25 S26 H252 240.0 241.7
H251 C25 S26 H252 120.0 123.4
N24 C25 H251 S26 243.5 246.8
N24 C25 H251 H252 121.8 123.5
S26 C25 H251 H252 238.2 236.7
N24 C25 H252 S26 116.4 113.2
N24 C25 H252 H251 238.2 236.5
S26 C25 H252 H251 121.8 123.3
N24 C25 S26 C27 27.8 326.6
S26 C27 C28 H281 180.0 61.4
S26 C27 C28 H282 300.0 181.4
S26 C27 C28 H283 60.0 301.4
S26 C27 C29 H291 180.0 58.6
S26 C27 C29 H292 300.0 178.6
S26 C27 C29 H293 60.0 298.5
S26 C27 C30 H30 162.5 98.2
C28 C27 C29 H291 302.4 182.6
C28 C27 C29 H292 62.4 302.5
C28 C27 C29 H293 182.4 62.5
C28 C27 C30 H30 45.0 340.0
H281 C28 C27 H282 240.0 240.0
H281 C28 C27 H283 120.0 120.0
H282 C28 C27 H283 240.0 240.0
C29 C27 C28 H281 56.5 297.4
C29 C27 C28 H282 176.5 57.5
C29 C27 C28 H283 296.5 177.5
C29 C27 C30 H30 284.7 216.1
H291 C29 C27 H292 240.0 240.0
H291 C29 C27 H293 120.0 120.1
H292 C29 C27 H293 240.0 240.0
C27 C30 N24 C25 339.1 358.4
N24 C30 C27 H30 237.2 239.2
C27 C30 C31 N33 269.2 285.2
H281 C28 C27 C29 56.5 297.4
C27 C28 H281 H282 120.0 120.0
C27 C28 H281 H283 240.0 240.0
H282 C28 H281 H283 120.0 120.0
H282 C28 C27 C29 176.5 57.5
C27 C28 H282 H281 240.0 240.0
C27 C28 H282 H283 120.0 120.0
H281 C28 H282 H283 240.0 240.0
H283 C28 C27 C29 296.5 177.5
C27 C28 H283 H281 120.0 120.0
C27 C28 H283 H282 240.1 240.0
H281 C28 H283 H282 120.0 120.0
C27 C29 H291 H292 120.0 120.0
C27 C29 H291 H293 240.0 239.9
H292 C29 H291 H293 120.0 119.9
C27 C29 H292 H291 240.0 239.9
C27 C29 H292 H293 120.0 120.0
H291 C29 H292 H293 240.0 240.1
C27 C29 H293 H291 120.0 120.1
C27 C29 H293 H292 240.0 240.0
H291 C29 H293 H292 120.0 119.9
C22 N24 C30 C31 286.0 299.9
O32 C31 C30 N33 177.9 180.0
C30 C31 N33 C34 176.9 180.0
C30 C31 N33 H33 356.9 0.0
H30 C30 N24 C25 219.7 237.7
H30 C30 C31 N33 28.5 43.3
C30 C31 O32 N33 182.3 180.0
O32 C31 N33 C34 359.0 360.0
O32 C31 N33 H33 179.0 180.0
C34 N33 C31 H33 180.0 179.9
C31 N33 C34 C35 132.1 180.0
C31 N33 C34 H341 252.1 300.0
C31 N33 C34 H342 12.1 60.0
C31 N33 C34 H33 180.0 180.1
C35 C34 N33 H341 240.0 240.0
C35 C34 N33 H342 120.0 120.0
N33 C34 C35 C36 285.3 80.0
N33 C34 C35 C40 109.2 259.7
H341 C34 N33 H342 240.0 240.0
C31 N33 H33 C34 180.0 179.9
H33 N33 C34 C35 312.1 360.0
H33 N33 C34 H341 72.1 120.0
H33 N33 C34 H342 192.1 240.0
C35 C34 N33 H33 312.1 360.0
N33 C34 C35 H341 120.0 120.1
N33 C34 C35 H342 240.0 240.0
H341 C34 C35 H342 120.0 120.0
C36 C35 C34 C40 176.1 180.3
C34 C35 C36 C37 183.8 180.0
C34 C35 C36 C41 0.3 360.0
C34 C35 C40 C39 177.7 179.8
C34 C35 C40 H40 357.7 0.0
H341 C34 N33 H33 72.1 120.0
N33 C34 H341 C35 239.7 240.0
N33 C34 H341 H342 119.9 120.0
C35 C34 H341 H342 240.2 240.0
H341 C34 C35 C36 165.3 320.0
H341 C34 C35 C40 349.2 139.7
H342 C34 N33 H33 192.1 240.0
N33 C34 H342 C35 120.3 120.0
N33 C34 H342 H341 240.1 240.0
C35 C34 H342 H341 119.8 120.0
H342 C34 C35 C36 45.3 200.0
H342 C34 C35 C40 229.2 19.7
C36 C35 C34 H341 165.3 320.0
C36 C35 C34 H342 45.3 200.0
C34 C35 C36 C40 183.9 179.7
C36 C35 C40 C39 1.5 359.5
C36 C35 C40 H40 181.5 179.7
C37 C36 C35 C41 183.4 180.0
C35 C36 C37 C38 358.8 360.0
C35 C36 C37 H37 178.8 180.0
C35 C36 C41 H411 91.8 90.0
C35 C36 C41 H412 211.8 210.0
C35 C36 C41 H413 331.8 330.0
C40 C35 C34 H341 349.2 139.7
C40 C35 C34 H342 229.2 19.7
C34 C35 C40 C36 176.2 180.3
C40 C35 C36 C37 359.8 0.3
C40 C35 C36 C41 176.4 180.2
C38 C39 C40 C35 358.6 0.4
C35 C40 C39 H39 178.6 180.3
C39 C40 C35 H40 180.0 179.8
C37 C36 C35 C40 359.8 0.3
C35 C36 C37 C41 176.6 180.0
C37 C36 C41 H411 268.3 269.9
C37 C36 C41 H412 28.3 29.9
C37 C36 C41 H413 148.3 150.0
C38 C37 C36 H37 180.0 180.0
C36 C37 C38 C39 1.4 0.0
C36 C37 C38 H38 181.4 179.9
C41 C36 C35 C40 176.4 180.2
C35 C36 C41 C37 183.5 180.0
C41 C36 C37 C38 182.2 180.0
C41 C36 C37 H37 2.1 0.0
H411 C41 C36 H412 240.0 240.0
H411 C41 C36 H413 120.0 120.0
H412 C41 C36 H413 240.0 240.0
C38 C37 C36 C41 182.2 180.0
C36 C37 C38 H37 180.0 180.0
C39 C38 C37 H38 180.0 180.1
C37 C38 C39 C40 359.9 359.8
C37 C38 C39 H39 179.9 180.0
H37 C37 C36 C41 2.1 0.0
C36 C37 H37 C38 180.0 180.0
H37 C37 C38 C39 181.4 180.0
H37 C37 C38 H38 1.4 359.9
C35 C40 C39 C38 358.6 0.4
C39 C38 C37 H37 181.4 180.0
C37 C38 C39 H38 180.0 179.9
C40 C39 C38 H39 180.0 179.8
C38 C39 C40 H40 178.6 180.2
H38 C38 C37 H37 1.4 359.9
C37 C38 H38 C39 180.0 180.1
H38 C38 C39 C40 179.9 179.9
H38 C38 C39 H39 359.9 0.0
C35 C40 C39 H40 180.0 180.2
C40 C39 C38 H38 179.9 179.9
C38 C39 C40 H39 180.0 180.2
H39 C39 C38 H38 359.9 0.0
C38 C39 H39 C40 180.0 179.8
H39 C39 C40 H40 358.6 0.0
C35 C40 H40 C39 180.0 179.8
H40 C40 C39 H39 358.6 0.0
C36 C41 H411 H412 120.0 120.0
C36 C41 H411 H413 240.0 240.1
H412 C41 H411 H413 120.0 120.1
C36 C41 H412 H411 240.0 240.0
C36 C41 H412 H413 120.0 120.0
H411 C41 H412 H413 240.0 239.9
C36 C41 H413 H411 120.0 119.9
C36 C41 H413 H412 240.0 240.0
H411 C41 H413 H412 120.0 120.1