PDB Chemical Component JBY

Ideal Model

Chemical Description

Name (2S)-2-{(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}propanoic acid
Synonyms Gly-Ala-Try Chromophore
Formula C14 H15 N3 O4
Formal charge 0
Molecular weight 289.287 g/mol
Component type L-peptide linking

Chemical features

Atom count 36
Chiral atom count 1
Chiral atoms CA3
Observed leaving atoms H2 OXT HXT
Bond count 37
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) (2S)-2-{(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}propanoic acid
Systematic name (OpenEye OEToolkits) (2~{S})-2-[(4~{Z})-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]propanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@H](N1C(=NC(=C\c2ccc(O)cc2)/C1=O)CN)C(O)=O
SMILES (CACTVS) C[CH](N1C(=NC(=Cc2ccc(O)cc2)C1=O)CN)C(O)=O
Stereo SMILES (OpenEye) C[C@@H](C(=O)O)N1C(=N/C(=C\c2ccc(cc2)O)/C1=O)CN
InChI descriptor InChI=1S/C14H15N3O4/c1-8(14(20)21)17-12(7-15)16-11(13(17)19)6-9-2-4-10(18)5-3-9/h2-6,8,18H,7,15H2,1H3,(H,20,21)/b11-6-/t8-/m0/s1
InChIKey descriptor KZUMQCZIDYKIEK-OITNDJBGSA-N

Status Information

Last modified 2019-03-08
Created 2018-08-29
Release status REL
Model PDB code 6M9X
Processing site RCSB