PDB Chemical Component JAR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JAR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.524 |
1.530 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.091 |
| C3 |
C2 |
1.523 |
1.530 |
| C2 |
N4 |
1.486 |
1.465 |
| C2 |
H2 |
1.100 |
1.091 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.091 |
| C3 |
H3B |
1.100 |
1.090 |
| N4 |
C13 |
1.340 |
1.358 |
| N4 |
N5 |
1.403 |
1.399 |
| N5 |
C6 |
1.355 |
1.305 |
| C7 |
C6 |
1.393 |
1.407 |
| C6 |
H6 |
1.080 |
1.081 |
| C13 |
C7 |
1.392 |
1.404 |
| C7 |
C8 |
1.463 |
1.464 |
| N10 |
C8 |
1.351 |
1.354 |
| C8 |
O9 |
1.242 |
1.218 |
| C11 |
N10 |
1.363 |
1.357 |
| N10 |
HN10 |
1.000 |
0.969 |
| C14 |
C11 |
1.503 |
1.507 |
| N12 |
C11 |
1.299 |
1.301 |
| N12 |
C13 |
1.413 |
1.343 |
| C16 |
C14 |
1.533 |
1.543 |
| C26 |
C14 |
1.528 |
1.552 |
| C14 |
H14 |
1.100 |
1.090 |
| N17 |
C16 |
1.468 |
1.474 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C18 |
N17 |
1.450 |
1.469 |
| N17 |
C25 |
1.425 |
1.478 |
| C19 |
C18 |
1.535 |
1.507 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C24 |
C19 |
1.390 |
1.382 |
| C19 |
C20 |
1.429 |
1.382 |
| C21 |
C20 |
1.427 |
1.383 |
| C20 |
H20 |
1.080 |
1.080 |
| C22 |
C21 |
1.416 |
1.382 |
| C21 |
H21 |
1.080 |
1.080 |
| C23 |
C22 |
1.415 |
1.382 |
| C22 |
H22 |
1.080 |
1.080 |
| C23 |
C24 |
1.410 |
1.382 |
| C23 |
H23 |
1.080 |
1.080 |
| C24 |
H24 |
1.080 |
1.080 |
| C25 |
C26 |
1.512 |
1.552 |
| C25 |
H25 |
1.100 |
1.090 |
| C25 |
H25A |
1.100 |
1.090 |
| C26 |
C28 |
1.526 |
1.530 |
| C26 |
H26 |
1.100 |
1.090 |
| C28 |
H28 |
1.100 |
1.090 |
| C28 |
H28A |
1.100 |
1.090 |
| C28 |
H28B |
1.100 |
1.090 |
Bond Angles for JAR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| C1 |
C2 |
N4 |
110.7 |
109.5 |
| C1 |
C2 |
H2 |
105.3 |
109.5 |
| H1 |
C1 |
H1A |
109.5 |
109.5 |
| H1 |
C1 |
H1B |
109.4 |
109.4 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| C3 |
C2 |
N4 |
109.7 |
109.5 |
| C3 |
C2 |
H2 |
106.3 |
109.5 |
| N4 |
C2 |
H2 |
110.3 |
109.5 |
| C2 |
N4 |
C13 |
125.0 |
125.8 |
| C2 |
N4 |
N5 |
122.3 |
125.8 |
| H3 |
C3 |
H3A |
109.4 |
109.5 |
| H3 |
C3 |
H3B |
109.4 |
109.5 |
| H3A |
C3 |
H3B |
109.5 |
109.4 |
| N5 |
N4 |
C13 |
112.6 |
108.4 |
| N4 |
C13 |
C7 |
104.8 |
106.6 |
| N4 |
C13 |
N12 |
129.4 |
134.3 |
| N4 |
N5 |
C6 |
104.8 |
109.5 |
| N5 |
C6 |
H6 |
125.6 |
125.8 |
| C7 |
C6 |
H6 |
125.5 |
125.9 |
| C7 |
C8 |
O9 |
124.9 |
121.2 |
| C11 |
N10 |
HN10 |
116.6 |
119.9 |
| C16 |
C14 |
H14 |
111.5 |
110.7 |
| C26 |
C14 |
H14 |
110.2 |
110.7 |
| N17 |
C16 |
H16 |
111.3 |
109.9 |
| N17 |
C16 |
H16A |
111.3 |
110.0 |
| H16 |
C16 |
H16A |
107.6 |
109.9 |
| C18 |
N17 |
C25 |
108.2 |
111.0 |
| N17 |
C25 |
C26 |
104.4 |
104.9 |
| N17 |
C25 |
H25 |
111.2 |
110.4 |
| N17 |
C25 |
H25A |
111.2 |
110.4 |
| C19 |
C18 |
H18 |
110.1 |
109.4 |
| C19 |
C18 |
H18A |
110.1 |
109.5 |
| H18 |
C18 |
H18A |
108.9 |
109.4 |
| C19 |
C20 |
H20 |
119.8 |
120.0 |
| C21 |
C20 |
H20 |
119.8 |
120.0 |
| C22 |
C21 |
H21 |
120.9 |
120.0 |
| C23 |
C22 |
H22 |
119.9 |
120.0 |
| C24 |
C23 |
H23 |
119.4 |
120.0 |
| C23 |
C24 |
H24 |
120.4 |
120.0 |
| C26 |
C25 |
H25 |
111.2 |
110.4 |
| C26 |
C25 |
H25A |
111.2 |
110.2 |
| C25 |
C26 |
C28 |
117.1 |
111.0 |
| C25 |
C26 |
H26 |
111.6 |
111.0 |
| H25 |
C25 |
H25A |
107.7 |
110.4 |
| C28 |
C26 |
H26 |
97.4 |
110.9 |
| C26 |
C28 |
H28 |
109.5 |
109.5 |
| C26 |
C28 |
H28A |
109.5 |
109.5 |
| C26 |
C28 |
H28B |
109.5 |
109.4 |
| H28 |
C28 |
H28A |
109.4 |
109.5 |
| H28 |
C28 |
H28B |
109.5 |
109.5 |
| H28A |
C28 |
H28B |
109.5 |
109.5 |
Torsion Angles for JAR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
N4 |
235.4 |
240.0 |
| C3 |
C2 |
C1 |
H2 |
116.3 |
120.0 |
| N4 |
C2 |
C1 |
H2 |
240.9 |
240.0 |
| C1 |
C2 |
N4 |
C13 |
135.8 |
120.0 |
| C1 |
C2 |
N4 |
N5 |
319.2 |
300.4 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
N4 |
304.6 |
300.0 |
| H1 |
C1 |
C2 |
H2 |
63.7 |
60.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
N4 |
64.6 |
60.0 |
| H1A |
C1 |
C2 |
H2 |
183.7 |
180.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.1 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
N4 |
184.6 |
180.0 |
| H1B |
C1 |
C2 |
H2 |
303.7 |
300.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H1A |
300.0 |
300.0 |
| C3 |
C2 |
C1 |
H1B |
60.0 |
60.0 |
| C1 |
C2 |
C3 |
N4 |
125.1 |
120.0 |
| C1 |
C2 |
C3 |
H2 |
244.3 |
240.0 |
| N4 |
C2 |
C3 |
H2 |
119.2 |
120.0 |
| C3 |
C2 |
N4 |
C13 |
262.9 |
240.0 |
| C3 |
C2 |
N4 |
N5 |
86.3 |
60.3 |
| N4 |
C2 |
C1 |
H1 |
304.6 |
300.0 |
| N4 |
C2 |
C1 |
H1A |
64.6 |
60.0 |
| N4 |
C2 |
C1 |
H1B |
184.6 |
180.0 |
| C1 |
C2 |
N4 |
H2 |
116.1 |
120.0 |
| C3 |
C2 |
N4 |
H2 |
243.2 |
240.0 |
| N5 |
N4 |
C2 |
C13 |
183.4 |
180.4 |
| C2 |
N4 |
C13 |
C7 |
181.0 |
179.9 |
| C2 |
N4 |
C13 |
N12 |
359.8 |
0.8 |
| C2 |
N4 |
N5 |
C6 |
179.3 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
63.7 |
60.0 |
| H2 |
C2 |
C1 |
H1A |
183.7 |
180.0 |
| H2 |
C2 |
C1 |
H1B |
303.7 |
300.0 |
| C1 |
C2 |
H2 |
N4 |
240.5 |
240.0 |
| C3 |
C2 |
H2 |
N4 |
118.9 |
120.0 |
| H2 |
C2 |
N4 |
C13 |
19.7 |
360.0 |
| H2 |
C2 |
N4 |
N5 |
203.1 |
180.3 |
| H3 |
C3 |
C2 |
N4 |
54.9 |
300.0 |
| H3 |
C3 |
C2 |
H2 |
295.7 |
180.0 |
| H3A |
C3 |
H3 |
H3B |
120.0 |
120.0 |
| H3A |
C3 |
C2 |
N4 |
174.9 |
60.0 |
| H3A |
C3 |
C2 |
H2 |
55.7 |
300.0 |
| H3 |
C3 |
H3A |
H3B |
240.1 |
240.0 |
| H3B |
C3 |
C2 |
N4 |
294.9 |
180.0 |
| H3B |
C3 |
C2 |
H2 |
175.7 |
59.9 |
| H3 |
C3 |
H3B |
H3A |
119.9 |
120.0 |
| C13 |
N4 |
C2 |
H2 |
19.7 |
360.0 |
| C2 |
N4 |
C13 |
N5 |
183.1 |
180.3 |
| C13 |
N4 |
N5 |
C6 |
2.3 |
0.3 |
| N5 |
N4 |
C2 |
H2 |
203.1 |
180.3 |
| C2 |
N4 |
N5 |
C13 |
177.0 |
179.7 |
| N5 |
N4 |
C13 |
C7 |
357.9 |
359.5 |
| N5 |
N4 |
C13 |
N12 |
176.7 |
180.4 |
| N4 |
N5 |
C6 |
H6 |
178.4 |
179.9 |
| C6 |
N5 |
N4 |
C13 |
2.3 |
0.3 |
| C7 |
C6 |
N5 |
H6 |
180.0 |
180.0 |
| N4 |
C13 |
C7 |
C6 |
1.0 |
0.4 |
| N5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| N4 |
C13 |
C7 |
N12 |
178.9 |
180.7 |
| C13 |
C7 |
C6 |
H6 |
180.4 |
179.8 |
| N4 |
C13 |
C7 |
C8 |
176.7 |
180.2 |
| C8 |
C7 |
C6 |
H6 |
6.1 |
0.1 |
| C14 |
C11 |
N10 |
HN10 |
357.9 |
0.1 |
| N4 |
C13 |
N12 |
C11 |
182.3 |
179.6 |
| N12 |
C11 |
N10 |
HN10 |
180.4 |
180.0 |
| N4 |
C13 |
N12 |
C7 |
181.4 |
179.0 |
| C26 |
C14 |
C16 |
H14 |
240.0 |
241.6 |
| C16 |
C14 |
C26 |
H14 |
120.9 |
118.5 |
| N17 |
C16 |
C14 |
H14 |
124.8 |
96.3 |
| H16 |
C16 |
N17 |
H16A |
120.0 |
121.1 |
| H16 |
C16 |
C14 |
H14 |
244.7 |
215.7 |
| N17 |
C16 |
H16 |
H16A |
237.8 |
238.8 |
| H16A |
C16 |
C14 |
H14 |
4.7 |
336.7 |
| N17 |
C16 |
H16A |
H16 |
122.2 |
121.1 |
| C18 |
N17 |
C16 |
H16 |
95.3 |
117.3 |
| C18 |
N17 |
C16 |
H16A |
335.3 |
356.2 |
| C18 |
N17 |
C25 |
C26 |
157.6 |
146.3 |
| C18 |
N17 |
C25 |
H25 |
277.6 |
265.2 |
| C18 |
N17 |
C25 |
H25A |
37.6 |
27.6 |
| C25 |
N17 |
C16 |
H16 |
212.1 |
239.5 |
| C25 |
N17 |
C16 |
H16A |
92.1 |
118.5 |
| C26 |
C25 |
N17 |
H25 |
240.0 |
241.1 |
| C26 |
C25 |
N17 |
H25A |
120.0 |
118.7 |
| N17 |
C25 |
C26 |
C28 |
197.1 |
204.8 |
| N17 |
C25 |
C26 |
H26 |
86.1 |
81.0 |
| H25 |
C25 |
N17 |
H25A |
240.0 |
237.6 |
| C19 |
C18 |
N17 |
C25 |
174.8 |
69.2 |
| H18 |
C18 |
C19 |
H18A |
120.0 |
119.9 |
| H18 |
C18 |
N17 |
C25 |
294.8 |
189.1 |
| C19 |
C18 |
H18 |
H18A |
239.3 |
240.1 |
| H18A |
C18 |
N17 |
C25 |
54.8 |
309.1 |
| C19 |
C18 |
H18A |
H18 |
120.7 |
119.9 |
| C24 |
C19 |
C18 |
H18 |
185.7 |
149.8 |
| C24 |
C19 |
C18 |
H18A |
65.8 |
29.9 |
| C24 |
C19 |
C20 |
H20 |
179.9 |
180.3 |
| C20 |
C19 |
C18 |
H18 |
5.8 |
329.9 |
| C20 |
C19 |
C18 |
H18A |
245.8 |
210.0 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
180.0 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
180.0 |
| C22 |
C21 |
C20 |
H20 |
179.6 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
359.6 |
360.0 |
| C23 |
C22 |
C21 |
H21 |
180.6 |
180.0 |
| H22 |
C22 |
C21 |
H21 |
0.6 |
0.0 |
| C24 |
C23 |
C22 |
H22 |
179.8 |
179.8 |
| H23 |
C23 |
C22 |
H22 |
359.8 |
360.0 |
| H23 |
C23 |
C24 |
H24 |
359.7 |
359.8 |
| H24 |
C24 |
C23 |
H23 |
359.7 |
359.8 |
| C25 |
C26 |
C14 |
H14 |
257.3 |
277.0 |
| N17 |
C25 |
C26 |
H25 |
120.0 |
118.9 |
| N17 |
C25 |
C26 |
H25A |
240.0 |
241.1 |
| H25 |
C25 |
C26 |
H25A |
120.0 |
122.2 |
| C28 |
C26 |
C25 |
H26 |
111.0 |
123.9 |
| C25 |
C26 |
C28 |
H28 |
300.8 |
58.5 |
| C25 |
C26 |
C28 |
H28A |
60.8 |
178.5 |
| C25 |
C26 |
C28 |
H28B |
180.8 |
298.5 |
| N17 |
C25 |
H25 |
C26 |
244.1 |
244.5 |
| N17 |
C25 |
H25 |
H25A |
122.0 |
122.4 |
| C26 |
C25 |
H25 |
H25A |
237.9 |
237.9 |
| H25 |
C25 |
C26 |
C28 |
77.1 |
85.9 |
| H25 |
C25 |
C26 |
H26 |
326.1 |
322.1 |
| N17 |
C25 |
H25A |
C26 |
115.9 |
115.4 |
| N17 |
C25 |
H25A |
H25 |
238.0 |
237.6 |
| C26 |
C25 |
H25A |
H25 |
122.1 |
122.2 |
| H25A |
C25 |
C26 |
C28 |
317.1 |
323.7 |
| H25A |
C25 |
C26 |
H26 |
206.1 |
199.9 |
| C28 |
C26 |
C14 |
H14 |
25.7 |
35.1 |
| C28 |
C26 |
C25 |
H25 |
77.1 |
85.9 |
| C28 |
C26 |
C25 |
H25A |
317.1 |
323.7 |
| C25 |
C26 |
C28 |
H26 |
241.1 |
236.1 |
| H28 |
C28 |
C26 |
H28A |
240.0 |
240.0 |
| H28 |
C28 |
C26 |
H28B |
120.0 |
120.0 |
| H28A |
C28 |
C26 |
H28B |
240.0 |
240.0 |
| H26 |
C26 |
C14 |
H14 |
136.9 |
159.0 |
| H26 |
C26 |
C25 |
H25 |
326.1 |
322.1 |
| H26 |
C26 |
C25 |
H25A |
206.1 |
199.9 |
| C25 |
C26 |
H26 |
C28 |
123.0 |
123.9 |
| H26 |
C26 |
C28 |
H28 |
59.7 |
182.4 |
| H26 |
C26 |
C28 |
H28A |
179.7 |
302.4 |
| H26 |
C26 |
C28 |
H28B |
299.7 |
62.4 |
| H28 |
C28 |
C26 |
H26 |
59.7 |
182.4 |
| C26 |
C28 |
H28 |
H28A |
120.0 |
120.0 |
| C26 |
C28 |
H28 |
H28B |
240.0 |
240.0 |
| H28A |
C28 |
H28 |
H28B |
120.0 |
120.0 |
| H28A |
C28 |
C26 |
H26 |
179.7 |
302.4 |
| C26 |
C28 |
H28A |
H28 |
240.0 |
240.0 |
| C26 |
C28 |
H28A |
H28B |
120.0 |
120.0 |
| H28 |
C28 |
H28A |
H28B |
240.0 |
240.0 |
| H28B |
C28 |
C26 |
H26 |
299.7 |
62.4 |
| C26 |
C28 |
H28B |
H28 |
120.0 |
120.0 |
| C26 |
C28 |
H28B |
H28A |
240.0 |
240.0 |
| H28 |
C28 |
H28B |
H28A |
120.0 |
120.0 |