PDB Chemical Component J9Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J9Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.404	1.383
C1	C6	1.424	1.382
C1	H1	1.080	1.080
N1	C8	1.470	1.465
N1	C17	1.332	1.347
N1	HN1	1.000	0.971
O1	C17	1.238	1.216
P1	O2	1.587	1.567
P1	O3	1.552	1.610
P1	O4	1.475	1.566
P1	O5	1.482	1.567
C2	C3	1.404	1.382
C2	H2	1.080	1.081
C3	C4	1.400	1.383
C3	H3	1.080	1.079
O3	C18	1.451	1.429
S3	C13	1.706	1.759
S3	C16	1.670	1.755
C4	C5	1.405	1.382
C4	H4	1.080	1.080
C5	C6	1.417	1.383
C5	H5	1.080	1.079
C6	C7	1.482	1.507
C7	C8	1.592	1.530
C7	H7	1.100	1.090
C7	H7A	1.100	1.090
C8	C18	1.556	1.530
C8	H8	1.100	1.090
C9	C10	1.384	1.359
C9	C14	1.396	1.416
C9	H9	1.080	1.081
C10	C11	1.397	1.389
C10	H10	1.080	1.080
C11	C12	1.399	1.375
C11	H11	1.080	1.080
C12	C13	1.397	1.399
C12	H12	1.080	1.081
C13	C14	1.424	1.400
C14	C15	1.435	1.404
C15	C16	1.407	1.336
C15	H15	1.080	1.080
C16	C17	1.382	1.471
C18	H18	1.100	1.090
C18	H18A	1.100	1.090

Bond Angles for J9Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	120.1	120.0
C2	C1	H1	119.9	120.0
C1	C2	C3	120.6	120.0
C1	C2	H2	119.7	120.0
C6	C1	H1	119.9	120.0
C1	C6	C5	118.7	120.0
C1	C6	C7	120.7	120.0
C8	N1	C17	117.3	120.0
C8	N1	HN1	121.4	120.0
N1	C8	C7	109.6	109.5
N1	C8	C18	108.2	109.5
N1	C8	H8	111.8	109.4
C17	N1	HN1	121.3	120.0
N1	C17	O1	118.6	120.0
N1	C17	C16	122.1	120.0
O1	C17	C16	119.2	119.9
O2	P1	O3	99.6	109.4
O2	P1	O4	106.7	109.4
O2	P1	O5	104.9	109.5
O3	P1	O4	108.1	109.5
O3	P1	O5	111.9	109.5
P1	O3	C18	114.7	123.0
O4	P1	O5	122.9	109.5
C3	C2	H2	119.7	120.0
C2	C3	C4	119.6	120.0
C2	C3	H3	120.2	120.0
C4	C3	H3	120.2	120.0
C3	C4	C5	120.6	120.0
C3	C4	H4	119.7	120.0
O3	C18	C8	109.3	109.5
O3	C18	H18	109.6	109.5
O3	C18	H18A	109.5	109.5
C13	S3	C16	93.8	91.6
S3	C13	C12	129.6	130.6
S3	C13	C14	110.4	109.6
S3	C16	C15	113.1	110.7
S3	C16	C17	127.5	124.6
C5	C4	H4	119.7	120.0
C4	C5	C6	120.3	120.0
C4	C5	H5	119.8	120.1
C6	C5	H5	119.9	120.0
C5	C6	C7	120.4	120.0
C6	C7	C8	116.1	109.5
C6	C7	H7	107.3	109.5
C6	C7	H7A	107.3	109.4
C8	C7	H7	107.3	109.5
C8	C7	H7A	107.3	109.5
C7	C8	C18	113.8	109.5
C7	C8	H8	106.0	109.5
H7	C7	H7A	111.6	109.4
C18	C8	H8	107.4	109.5
C8	C18	H18	109.5	109.5
C8	C18	H18A	109.5	109.5
C10	C9	C14	121.2	120.5
C10	C9	H9	119.4	119.8
C9	C10	C11	119.5	120.7
C9	C10	H10	120.2	119.7
C14	C9	H9	119.4	119.7
C9	C14	C13	119.0	118.6
C9	C14	C15	129.0	128.8
C11	C10	H10	120.2	119.6
C10	C11	C12	120.9	120.1
C10	C11	H11	119.5	120.0
C12	C11	H11	119.5	119.9
C11	C12	C13	119.4	120.2
C11	C12	H12	120.3	119.9
C13	C12	H12	120.3	119.9
C12	C13	C14	120.0	119.8
C13	C14	C15	112.0	112.6
C14	C15	C16	110.7	115.6
C14	C15	H15	124.7	122.2
C16	C15	H15	124.7	122.2
C15	C16	C17	119.4	124.7
H18	C18	H18A	109.4	109.4

Torsion Angles for J9Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	H1	180.0	180.4
C2	C1	C6	C5	357.6	360.0
C2	C1	C6	C7	172.4	179.9
C3	C2	C1	H2	180.0	180.1
C1	C2	C3	C4	359.5	360.0
C1	C2	C3	H3	179.5	179.9
C2	C1	C6	H1	180.0	179.6
C6	C1	C2	C3	1.5	0.1
C6	C1	C2	H2	181.5	180.0
C4	C5	C6	C1	2.3	359.9
C1	C6	C5	H5	182.3	180.0
C5	C6	C1	C7	185.2	180.0
C1	C6	C7	C8	292.9	90.0
C1	C6	C7	H7	52.9	210.0
C1	C6	C7	H7A	173.0	329.9
C2	C1	H1	C6	180.0	180.4
H1	C1	C2	C3	181.5	179.7
H1	C1	C2	H2	1.5	359.6
H1	C1	C6	C5	177.7	180.4
H1	C1	C6	C7	352.4	0.3
C17	N1	C8	HN1	180.0	179.9
C8	N1	C17	O1	358.1	360.0
C8	N1	C17	C16	178.0	180.0
O3	C18	C8	N1	185.4	65.0
C6	C7	C8	N1	62.3	65.0
N1	C8	C7	H7	302.3	305.0
N1	C8	C7	H7A	182.3	185.0
C7	C8	N1	C18	124.6	120.0
C7	C8	N1	H8	242.8	240.0
C18	C8	N1	H8	118.1	120.0
N1	C8	C18	H18	65.4	305.0
N1	C8	C18	H18A	305.4	185.0
C8	N1	C17	HN1	180.0	180.1
C17	N1	C8	C7	275.8	205.0
C17	N1	C8	C18	151.1	85.0
C17	N1	C8	H8	33.0	325.0
O1	C17	N1	C16	180.1	180.0
S3	C16	C17	N1	192.3	0.0
C15	C16	C17	N1	10.7	180.0
C8	N1	HN1	C17	180.0	179.9
HN1	N1	C8	C7	95.8	25.1
HN1	N1	C8	C18	331.1	265.1
HN1	N1	C8	H8	213.0	145.1
HN1	N1	C17	O1	178.0	179.9
HN1	N1	C17	C16	358.0	359.9
O1	C17	N1	HN1	178.0	179.9
N1	C17	O1	C16	179.9	180.0
S3	C16	C17	O1	12.3	180.1
C15	C16	C17	O1	190.7	0.0
O3	P1	O2	O4	247.7	240.0
O3	P1	O2	O5	115.9	120.0
O2	P1	O3	C18	324.1	65.0
O4	P1	O2	O5	228.2	240.0
O2	P1	O3	O4	111.2	120.0
O2	P1	O3	O5	249.5	240.0
O4	P1	O3	O5	138.3	120.1
P1	O3	C18	C8	100.0	180.0
P1	O3	C18	H18	220.0	300.0
P1	O3	C18	H18A	340.0	60.0
O2	P1	O4	O3	253.7	240.0
O2	P1	O4	O5	121.0	120.0
O3	P1	O4	O5	227.3	240.0
O4	P1	O3	C18	212.8	305.1
O2	P1	O5	O3	107.0	120.0
O2	P1	O5	O4	238.2	240.0
O3	P1	O5	O4	131.2	120.0
O5	P1	O3	C18	74.5	185.0
C3	C2	C1	C6	1.5	0.1
C3	C2	C1	H1	181.5	179.7
C1	C2	C3	H2	180.0	179.9
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	C5	0.4	359.9
C2	C3	C4	H4	180.5	180.0
H2	C2	C1	C6	181.5	180.0
H2	C2	C1	H1	1.5	359.6
C1	C2	H2	C3	180.0	180.1
H2	C2	C3	C4	179.5	180.0
H2	C2	C3	H3	359.5	360.0
C4	C3	C2	H2	179.5	180.0
C2	C3	C4	H3	180.0	179.9
C5	C4	C3	H4	180.0	179.9
C3	C4	C5	C6	358.7	0.1
C3	C4	C5	H5	178.7	180.0
H3	C3	C2	H2	359.5	360.0
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	C5	180.4	180.0
H3	C3	C4	H4	0.5	0.1
N1	C8	C18	O3	185.4	65.0
C18	O3	P1	O4	212.8	305.1
C18	O3	P1	O5	74.5	185.0
C7	C8	C18	O3	63.4	305.0
O3	C18	C8	H8	306.3	185.0
C8	C18	O3	H18	240.0	240.0
C8	C18	O3	H18A	120.0	120.0
H18	C18	O3	H18A	240.0	240.0
C13	S3	C16	C15	359.3	0.0
C13	S3	C16	C17	177.8	180.0
C9	C14	C13	S3	179.0	180.0
C11	C12	C13	S3	179.5	180.1
S3	C13	C12	H12	359.5	0.0
C12	C13	S3	C14	180.9	180.0
S3	C13	C14	C15	1.9	360.0
N1	C17	C16	S3	192.3	0.0
O1	C17	C16	S3	12.3	180.1
C16	S3	C13	C12	180.2	180.0
C16	S3	C13	C14	359.3	0.0
C14	C15	C16	S3	1.8	360.0
S3	C16	C15	H15	181.8	180.0
C15	C16	S3	C17	181.5	180.0
C1	C6	C5	C4	2.3	359.9
C5	C4	C3	H3	180.4	180.0
C3	C4	C5	H4	180.0	180.1
C6	C5	C4	H5	180.0	180.1
C4	C5	C6	C7	187.5	179.9
H4	C4	C3	H3	0.5	0.1
C3	C4	H4	C5	180.0	179.9
H4	C4	C5	C6	178.6	180.1
H4	C4	C5	H5	358.6	360.0
C5	C6	C1	H1	177.7	180.4
C1	C6	C5	C7	174.8	180.0
C6	C5	C4	H4	178.6	180.1
C4	C5	C6	H5	180.0	179.9
C5	C6	C7	C8	107.6	269.9
C5	C6	C7	H7	227.6	29.9
C5	C6	C7	H7A	347.6	149.9
H5	C5	C4	H4	358.6	360.0
C4	C5	H5	C6	180.0	180.1
H5	C5	C6	C7	7.5	0.1
C7	C6	C1	H1	352.4	0.3
C1	C6	C7	C5	185.3	180.0
N1	C8	C7	C6	62.3	65.0
C7	C6	C5	H5	7.5	0.1
C8	C7	C6	H7	240.0	240.0
C8	C7	C6	H7A	120.0	120.0
C6	C7	C8	C18	183.6	185.0
C6	C7	C8	H8	301.5	305.0
H7	C7	C6	H7A	240.0	240.1
C7	C8	N1	C17	275.8	205.0
C7	C8	N1	HN1	95.8	25.1
N1	C8	C7	C18	238.7	240.0
N1	C8	C7	H8	120.8	119.9
O3	C18	C8	C7	63.4	305.0
C6	C7	C8	H7	120.0	120.0
C6	C7	C8	H7A	240.0	240.0
H7	C7	C8	H7A	120.0	120.0
C18	C8	C7	H8	242.2	240.0
C7	C8	C18	H18	303.3	185.0
C7	C8	C18	H18A	183.4	65.0
C6	C7	H7	C8	234.6	240.0
C6	C7	H7	H7A	117.3	119.9
C8	C7	H7	H7A	242.7	240.0
H7	C7	C8	C18	63.6	65.0
H7	C7	C8	H8	181.5	185.0
C6	C7	H7A	C8	125.4	120.0
C6	C7	H7A	H7	242.7	240.0
C8	C7	H7A	H7	117.3	120.0
H7A	C7	C8	C18	303.6	305.0
H7A	C7	C8	H8	61.5	65.0
C18	C8	N1	C17	151.1	85.0
C18	C8	N1	HN1	331.1	265.1
N1	C8	C18	C7	122.1	120.0
N1	C8	C18	H8	239.1	240.1
O3	C18	C8	H18	120.0	120.0
O3	C18	C8	H18A	240.0	240.0
C18	C8	C7	H7	63.6	65.0
C18	C8	C7	H7A	303.6	305.0
C7	C8	C18	H8	117.0	120.0
H18	C18	C8	H18A	120.0	120.0
H8	C8	N1	C17	33.0	325.0
H8	C8	N1	HN1	213.0	145.1
N1	C8	H8	C7	240.6	240.0
N1	C8	H8	C18	118.6	120.0
H8	C8	C7	H7	181.5	185.0
H8	C8	C7	H7A	61.5	65.0
C7	C8	H8	C18	238.0	240.0
H8	C8	C18	H18	186.3	64.9
H8	C8	C18	H18A	66.3	305.0
C14	C9	C10	H9	180.0	180.1
C10	C9	C14	C13	2.9	359.9
C10	C9	C14	C15	179.5	179.9
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	C12	1.3	360.0
C9	C10	C11	H11	181.3	180.0
S3	C13	C14	C9	179.0	180.0
C10	C9	C14	H9	180.0	179.9
C14	C9	C10	C11	357.3	0.1
C14	C9	C10	H10	177.3	180.0
C12	C13	C14	C9	358.2	0.0
C13	C14	C9	C15	183.4	180.0
C9	C14	C15	C16	180.9	180.0
C9	C14	C15	H15	0.9	360.0
C10	C9	H9	C14	180.0	180.1
H9	C9	C10	C11	177.3	180.0
H9	C9	C10	H10	357.3	359.9
H9	C9	C14	C13	183.0	180.0
H9	C9	C14	C15	359.5	0.0
C11	C10	C9	C14	357.3	0.1
C11	C10	C9	H9	177.3	180.0
C9	C10	C11	H10	180.0	180.0
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	C13	359.8	360.0
C10	C11	C12	H12	179.8	180.0
H10	C10	C9	C14	177.3	180.0
H10	C10	C9	H9	357.3	359.9
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	181.3	180.0
H10	C10	C11	H11	1.3	0.0
S3	C13	C12	C11	179.5	180.1
C12	C11	C10	H10	181.3	180.0
C10	C11	C12	H11	180.0	180.0
C13	C12	C11	H12	180.0	179.9
C11	C12	C13	C14	0.5	0.0
H11	C11	C10	H10	1.3	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C12	C13	179.8	180.0
H11	C11	C12	H12	359.8	0.0
C12	C13	S3	C16	180.2	180.0
S3	C13	C12	C14	179.0	180.0
C9	C14	C13	C12	358.2	0.0
C13	C12	C11	H11	179.8	180.0
C11	C12	C13	H12	180.0	180.1
C12	C13	C14	C15	181.1	180.0
H12	C12	C11	H11	359.8	0.0
C11	C12	H12	C13	180.0	179.9
H12	C12	C13	C14	180.5	180.0
C14	C13	S3	C16	359.3	0.0
S3	C13	C14	C12	180.8	180.0
C13	C14	C9	H9	183.0	180.0
C9	C14	C13	C15	177.1	180.0
C14	C13	C12	H12	180.5	180.0
C13	C14	C15	C16	357.6	0.0
C13	C14	C15	H15	177.6	180.0
S3	C16	C15	C14	1.8	360.0
C15	C14	C9	H9	359.5	0.0
C9	C14	C15	C13	183.3	180.0
C16	C15	C14	H15	180.0	180.1
C14	C15	C16	C17	183.2	180.0
N1	C17	C16	C15	10.7	180.0
O1	C17	C16	C15	190.7	0.0
S3	C16	C15	C17	178.6	180.0
C14	C15	C16	H15	180.0	179.9
C14	C15	H15	C16	180.0	180.1
H15	C15	C16	C17	3.2	0.1
C16	C17	N1	HN1	358.0	359.9
N1	C17	C16	O1	180.1	180.0
S3	C16	C17	C15	181.6	180.0
C17	C16	C15	H15	3.2	0.1
O3	C18	H18	C8	240.1	240.0
O3	C18	H18	H18A	120.1	120.0
H18	C18	C8	H8	186.3	64.9
C8	C18	H18	H18A	239.9	240.0
O3	C18	H18A	C8	119.8	120.0
O3	C18	H18A	H18	239.9	240.0
H18A	C18	C8	H8	66.3	305.0
C8	C18	H18A	H18	120.1	120.0