PDB Chemical Component J90
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for J90
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.321 |
1.348 |
| N1 |
C6 |
1.328 |
1.349 |
| C2 |
N3 |
1.318 |
1.304 |
| N3 |
C4 |
1.336 |
1.342 |
| C4 |
C5 |
1.418 |
1.385 |
| C4 |
N7 |
1.396 |
1.379 |
| C5 |
C6 |
1.431 |
1.401 |
| C5 |
N18 |
1.511 |
1.480 |
| C6 |
O21 |
1.417 |
1.221 |
| N7 |
C22 |
1.393 |
1.466 |
| C8 |
C9 |
1.415 |
1.382 |
| C8 |
C13 |
1.411 |
1.383 |
| C8 |
C22 |
1.493 |
1.507 |
| C9 |
C10 |
1.380 |
1.382 |
| C10 |
C11 |
1.401 |
1.383 |
| C11 |
C12 |
1.424 |
1.383 |
| C11 |
S14 |
1.801 |
1.762 |
| C12 |
C13 |
1.405 |
1.382 |
| S14 |
O15 |
1.521 |
1.421 |
| S14 |
O16 |
1.524 |
1.420 |
| S14 |
N17 |
1.796 |
1.655 |
| N18 |
O19 |
1.211 |
1.218 |
| N18 |
O20 |
1.172 |
1.218 |
| N1 |
HN1 |
1.000 |
0.969 |
| C2 |
H2 |
1.080 |
1.080 |
| N7 |
HN7 |
1.000 |
0.970 |
| C9 |
H9 |
1.080 |
1.080 |
| C10 |
H10 |
1.080 |
1.080 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
H13 |
1.081 |
1.080 |
| N17 |
HN17 |
1.000 |
0.970 |
| N17 |
HN1A |
1.000 |
0.971 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.089 |
Bond Angles for J90
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
122.3 |
120.3 |
| N1 |
C2 |
N3 |
121.2 |
121.7 |
| C2 |
N1 |
HN1 |
118.9 |
119.8 |
| N1 |
C2 |
H2 |
119.4 |
119.1 |
| N1 |
C6 |
C5 |
119.8 |
118.8 |
| N1 |
C6 |
O21 |
113.8 |
120.6 |
| C6 |
N1 |
HN1 |
118.8 |
119.9 |
| C2 |
N3 |
C4 |
120.8 |
121.3 |
| N3 |
C2 |
H2 |
119.4 |
119.2 |
| N3 |
C4 |
C5 |
121.2 |
119.5 |
| N3 |
C4 |
N7 |
117.1 |
120.2 |
| C5 |
C4 |
N7 |
121.6 |
120.2 |
| C4 |
C5 |
C6 |
114.7 |
118.4 |
| C4 |
C5 |
N18 |
121.4 |
120.8 |
| C4 |
N7 |
C22 |
124.1 |
120.0 |
| C4 |
N7 |
HN7 |
104.9 |
120.0 |
| C6 |
C5 |
N18 |
123.9 |
120.8 |
| C5 |
C6 |
O21 |
126.4 |
120.6 |
| C5 |
N18 |
O19 |
113.8 |
120.0 |
| C5 |
N18 |
O20 |
103.5 |
120.0 |
| N7 |
C22 |
C8 |
105.8 |
109.5 |
| C22 |
N7 |
HN7 |
104.9 |
119.9 |
| N7 |
C22 |
H22 |
110.7 |
109.4 |
| N7 |
C22 |
H22A |
110.7 |
109.5 |
| C9 |
C8 |
C13 |
122.9 |
120.0 |
| C9 |
C8 |
C22 |
116.1 |
120.0 |
| C8 |
C9 |
C10 |
120.8 |
120.0 |
| C8 |
C9 |
H9 |
119.6 |
120.0 |
| C13 |
C8 |
C22 |
121.0 |
120.0 |
| C8 |
C13 |
C12 |
116.8 |
120.0 |
| C8 |
C13 |
H13 |
121.6 |
120.0 |
| C8 |
C22 |
H22 |
110.7 |
109.5 |
| C8 |
C22 |
H22A |
110.7 |
109.5 |
| C9 |
C10 |
C11 |
116.5 |
120.0 |
| C10 |
C9 |
H9 |
119.6 |
120.0 |
| C9 |
C10 |
H10 |
121.7 |
120.0 |
| C10 |
C11 |
C12 |
123.9 |
120.0 |
| C10 |
C11 |
S14 |
115.5 |
120.0 |
| C11 |
C10 |
H10 |
121.7 |
119.9 |
| C12 |
C11 |
S14 |
120.6 |
120.0 |
| C11 |
C12 |
C13 |
119.0 |
120.0 |
| C11 |
C12 |
H12 |
120.5 |
120.0 |
| C11 |
S14 |
O15 |
106.3 |
106.4 |
| C11 |
S14 |
O16 |
100.5 |
106.4 |
| C11 |
S14 |
N17 |
110.1 |
107.2 |
| C13 |
C12 |
H12 |
120.5 |
120.0 |
| C12 |
C13 |
H13 |
121.6 |
120.0 |
| O15 |
S14 |
O16 |
120.6 |
123.2 |
| O15 |
S14 |
N17 |
111.4 |
106.4 |
| O16 |
S14 |
N17 |
107.1 |
106.4 |
| S14 |
N17 |
HN17 |
109.5 |
120.0 |
| S14 |
N17 |
HN1A |
109.5 |
120.0 |
| O19 |
N18 |
O20 |
142.7 |
120.0 |
| HN17 |
N17 |
HN1A |
109.5 |
119.9 |
| H22 |
C22 |
H22A |
108.2 |
109.5 |
Torsion Angles for J90
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
0.3 |
360.0 |
| C2 |
N1 |
C6 |
O21 |
180.5 |
180.0 |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
180.3 |
| N1 |
C2 |
N3 |
C4 |
358.9 |
360.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
| C6 |
N1 |
C2 |
N3 |
0.6 |
0.0 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
179.7 |
| C6 |
N1 |
C2 |
H2 |
180.6 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.4 |
360.0 |
| N1 |
C6 |
C5 |
N18 |
180.3 |
180.0 |
| C5 |
C6 |
N1 |
O21 |
179.8 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
0.6 |
0.0 |
| N3 |
C2 |
N1 |
HN1 |
180.6 |
179.7 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
| C2 |
N3 |
C4 |
C5 |
0.7 |
0.0 |
| C2 |
N3 |
C4 |
N7 |
180.9 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
178.9 |
180.0 |
| C5 |
C4 |
N3 |
N7 |
179.8 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
0.1 |
0.0 |
| N3 |
C4 |
C5 |
N18 |
179.2 |
180.0 |
| N3 |
C4 |
N7 |
C22 |
0.5 |
354.7 |
| N3 |
C4 |
N7 |
HN7 |
120.5 |
174.6 |
| N1 |
C6 |
C5 |
C4 |
359.4 |
360.0 |
| N3 |
C4 |
C5 |
N7 |
180.2 |
180.0 |
| C5 |
C4 |
N7 |
C22 |
180.7 |
174.6 |
| C5 |
C4 |
N7 |
HN7 |
300.7 |
354.6 |
| C6 |
C5 |
C4 |
N18 |
180.9 |
180.0 |
| C4 |
C5 |
C6 |
O21 |
179.2 |
180.0 |
| C4 |
C5 |
N18 |
O19 |
34.1 |
5.7 |
| C4 |
C5 |
N18 |
O20 |
215.0 |
185.7 |
| N3 |
C4 |
N7 |
C5 |
179.8 |
180.0 |
| N7 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
| N7 |
C4 |
C5 |
N18 |
359.0 |
0.0 |
| C4 |
N7 |
C22 |
C8 |
206.1 |
180.0 |
| C22 |
N7 |
C4 |
HN7 |
240.0 |
180.0 |
| C4 |
N7 |
C22 |
H22 |
326.1 |
300.0 |
| C4 |
N7 |
C22 |
H22A |
86.1 |
59.9 |
| N1 |
C6 |
C5 |
O21 |
180.3 |
180.0 |
| C5 |
C6 |
N1 |
HN1 |
180.3 |
180.3 |
| C6 |
C5 |
C4 |
N7 |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
N18 |
179.1 |
180.0 |
| C6 |
C5 |
N18 |
O19 |
213.1 |
185.7 |
| C6 |
C5 |
N18 |
O20 |
34.0 |
5.6 |
| N18 |
C5 |
C4 |
N7 |
359.0 |
0.0 |
| C4 |
C5 |
N18 |
C6 |
181.0 |
180.0 |
| N18 |
C5 |
C6 |
O21 |
0.1 |
0.0 |
| O19 |
N18 |
C5 |
O20 |
179.1 |
180.0 |
| N1 |
C6 |
O21 |
C5 |
179.8 |
180.0 |
| O21 |
C6 |
N1 |
HN1 |
0.5 |
0.2 |
| O21 |
C6 |
C5 |
N18 |
0.1 |
0.0 |
| C4 |
N7 |
C22 |
HN7 |
120.0 |
180.0 |
| C9 |
C8 |
C22 |
N7 |
75.1 |
90.0 |
| C13 |
C8 |
C22 |
N7 |
258.1 |
269.7 |
| C8 |
C22 |
N7 |
H22 |
240.0 |
240.0 |
| C8 |
C22 |
N7 |
H22A |
120.0 |
120.1 |
| H22 |
C22 |
N7 |
H22A |
240.0 |
240.0 |
| N7 |
C22 |
C8 |
C9 |
75.1 |
90.0 |
| C13 |
C8 |
C9 |
C22 |
176.9 |
180.3 |
| C9 |
C8 |
C13 |
C12 |
2.9 |
0.0 |
| C9 |
C8 |
C13 |
H13 |
182.9 |
180.0 |
| C9 |
C8 |
C22 |
H22 |
315.1 |
330.1 |
| C9 |
C8 |
C22 |
H22A |
195.1 |
210.0 |
| C8 |
C9 |
C10 |
C11 |
359.7 |
360.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C8 |
C9 |
C10 |
H10 |
179.7 |
179.9 |
| N7 |
C22 |
C8 |
C13 |
258.1 |
269.7 |
| C9 |
C8 |
C13 |
C22 |
183.2 |
179.7 |
| C13 |
C8 |
C9 |
C10 |
358.3 |
0.0 |
| C13 |
C8 |
C9 |
H9 |
178.3 |
180.0 |
| C13 |
C8 |
C22 |
H22 |
138.1 |
149.7 |
| C13 |
C8 |
C22 |
H22A |
18.1 |
29.7 |
| C11 |
C12 |
C13 |
C8 |
357.8 |
359.9 |
| C8 |
C13 |
C12 |
H12 |
177.8 |
180.1 |
| C12 |
C13 |
C8 |
H13 |
180.0 |
180.0 |
| C8 |
C22 |
N7 |
HN7 |
86.1 |
0.1 |
| N7 |
C22 |
C8 |
H22 |
120.0 |
119.9 |
| N7 |
C22 |
C8 |
H22A |
240.0 |
240.0 |
| C9 |
C8 |
C22 |
C13 |
177.0 |
180.3 |
| C22 |
C8 |
C9 |
C10 |
181.4 |
179.7 |
| C22 |
C8 |
C9 |
H9 |
1.4 |
359.7 |
| C22 |
C8 |
C13 |
C12 |
179.7 |
180.4 |
| C22 |
C8 |
C13 |
H13 |
359.6 |
0.3 |
| H22 |
C22 |
C8 |
H22A |
120.0 |
120.1 |
| C10 |
C9 |
C8 |
C13 |
358.3 |
0.0 |
| C10 |
C9 |
C8 |
C22 |
181.4 |
179.7 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
C12 |
0.9 |
360.0 |
| C9 |
C10 |
C11 |
S14 |
180.9 |
179.9 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H9 |
179.7 |
180.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
S14 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.3 |
0.1 |
| C10 |
C11 |
C12 |
H12 |
180.3 |
179.9 |
| C10 |
C11 |
S14 |
O15 |
193.5 |
203.6 |
| C10 |
C11 |
S14 |
O16 |
319.9 |
336.5 |
| C10 |
C11 |
S14 |
N17 |
72.7 |
90.0 |
| C8 |
C13 |
C12 |
C11 |
357.8 |
359.9 |
| C10 |
C11 |
C12 |
S14 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H10 |
180.9 |
180.0 |
| C12 |
C11 |
S14 |
O15 |
13.5 |
23.5 |
| C12 |
C11 |
S14 |
O16 |
139.9 |
156.4 |
| C12 |
C11 |
S14 |
N17 |
252.7 |
270.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
H13 |
177.9 |
180.0 |
| C10 |
C11 |
S14 |
C12 |
180.0 |
180.0 |
| S14 |
C11 |
C10 |
H10 |
0.9 |
360.0 |
| S14 |
C11 |
C12 |
C13 |
180.4 |
180.1 |
| S14 |
C11 |
C12 |
H12 |
0.4 |
360.0 |
| O15 |
S14 |
C11 |
O16 |
233.5 |
227.1 |
| O15 |
S14 |
C11 |
N17 |
120.8 |
113.6 |
| O16 |
S14 |
C11 |
N17 |
247.2 |
246.5 |
| C11 |
S14 |
N17 |
HN17 |
180.0 |
150.0 |
| C11 |
S14 |
N17 |
HN1A |
300.0 |
330.0 |
| C12 |
C13 |
C8 |
C22 |
179.7 |
180.4 |
| C8 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
S14 |
180.4 |
180.1 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
179.9 |
| C11 |
S14 |
O15 |
O16 |
113.2 |
122.9 |
| C11 |
S14 |
O15 |
N17 |
240.0 |
245.9 |
| O16 |
S14 |
O15 |
N17 |
126.8 |
123.0 |
| O15 |
S14 |
N17 |
HN17 |
62.3 |
36.5 |
| O15 |
S14 |
N17 |
HN1A |
182.3 |
216.5 |
| C11 |
S14 |
O16 |
O15 |
243.8 |
237.1 |
| C11 |
S14 |
O16 |
N17 |
115.1 |
114.1 |
| O15 |
S14 |
O16 |
N17 |
231.3 |
237.0 |
| O16 |
S14 |
N17 |
HN17 |
288.4 |
263.5 |
| O16 |
S14 |
N17 |
HN1A |
48.5 |
83.6 |
| C11 |
S14 |
N17 |
O15 |
117.7 |
113.5 |
| C11 |
S14 |
N17 |
O16 |
251.6 |
246.5 |
| O15 |
S14 |
N17 |
O16 |
133.8 |
133.0 |
| HN17 |
N17 |
S14 |
HN1A |
240.0 |
180.0 |
| C5 |
N18 |
O19 |
O20 |
181.4 |
180.0 |
| C5 |
N18 |
O20 |
O19 |
178.6 |
180.0 |
| C2 |
N1 |
HN1 |
C6 |
180.0 |
180.3 |
| HN1 |
N1 |
C2 |
N3 |
180.6 |
179.7 |
| HN1 |
N1 |
C2 |
H2 |
0.6 |
359.7 |
| HN1 |
N1 |
C6 |
C5 |
180.3 |
180.3 |
| HN1 |
N1 |
C6 |
O21 |
0.5 |
0.2 |
| H2 |
C2 |
N1 |
C6 |
180.6 |
180.0 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.1 |
| H2 |
C2 |
N1 |
HN1 |
0.6 |
359.7 |
| H2 |
C2 |
N3 |
C4 |
178.9 |
180.0 |
| C4 |
N7 |
HN7 |
C22 |
227.9 |
180.0 |
| HN7 |
N7 |
C22 |
C8 |
86.1 |
0.1 |
| HN7 |
N7 |
C22 |
H22 |
206.1 |
120.0 |
| HN7 |
N7 |
C22 |
H22A |
326.1 |
240.0 |
| H9 |
C9 |
C8 |
C13 |
178.3 |
180.0 |
| H9 |
C9 |
C8 |
C22 |
1.4 |
359.7 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
| H9 |
C9 |
C10 |
C11 |
179.7 |
180.0 |
| H9 |
C9 |
C10 |
H10 |
359.7 |
360.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C9 |
H9 |
359.7 |
360.0 |
| H10 |
C10 |
C11 |
C12 |
180.9 |
180.0 |
| H10 |
C10 |
C11 |
S14 |
0.9 |
360.0 |
| H12 |
C12 |
C11 |
S14 |
0.4 |
360.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.1 |
| H12 |
C12 |
C13 |
H13 |
357.8 |
0.1 |
| H13 |
C13 |
C8 |
C22 |
359.6 |
0.3 |
| C8 |
C13 |
H13 |
C12 |
180.0 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
357.8 |
0.1 |
| S14 |
N17 |
HN17 |
HN1A |
120.0 |
180.0 |
| S14 |
N17 |
HN1A |
HN17 |
240.0 |
180.0 |
| N7 |
C22 |
H22 |
C8 |
243.0 |
240.0 |
| H22 |
C22 |
N7 |
HN7 |
206.1 |
120.0 |
| N7 |
C22 |
H22 |
H22A |
121.5 |
120.0 |
| C8 |
C22 |
H22 |
H22A |
238.5 |
239.9 |
| N7 |
C22 |
H22A |
C8 |
117.0 |
120.0 |
| H22A |
C22 |
N7 |
HN7 |
326.1 |
240.0 |
| N7 |
C22 |
H22A |
H22 |
238.5 |
240.1 |
| C8 |
C22 |
H22A |
H22 |
121.5 |
120.1 |