PDB Chemical Component J8Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J8Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.457	1.465
N1	C5	1.351	1.348
C2	C3	1.542	1.530
C2	C20	1.552	1.530
C3	O4	1.432	1.429
O4	P7	1.631	1.611
C5	O6	1.215	1.217
C5	C11	1.464	1.471
P7	O8	1.476	1.567
P7	O9	1.610	1.567
P7	O10	1.597	1.566
C11	C12	1.349	1.337
C11	S15	1.786	1.754
C12	C13	1.405	1.404
C13	C14	1.420	1.399
C13	C16	1.407	1.416
C14	S15	1.767	1.761
C14	C19	1.378	1.399
C16	C17	1.362	1.359
C17	C18	1.396	1.390
C18	C19	1.375	1.374
C20	C22	1.531	1.508
C21	C22	1.412	1.382
C21	C26	1.405	1.383
C22	C23	1.398	1.382
C23	C24	1.400	1.382
C24	C25	1.405	1.382
C24	C27	1.531	1.507
C25	C26	1.398	1.383
N1	HN1	1.000	0.970
C2	H2	1.100	1.090
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C12	H12	1.080	1.080
C16	H16	1.080	1.081
C17	H17	1.080	1.080
C18	H18	1.080	1.081
C19	H19	1.080	1.080
C20	H20	1.100	1.090
C20	H20A	1.100	1.090
C21	H21	1.080	1.080
C23	H23	1.080	1.080
C25	H25	1.081	1.080
C26	H26	1.080	1.080
C27	H27	1.100	1.090
C27	H27A	1.100	1.089
C27	H27B	1.100	1.090

Bond Angles for J8Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C5	120.4	120.0
N1	C2	C3	109.4	109.5
N1	C2	C20	105.0	109.5
C2	N1	HN1	119.8	120.0
N1	C2	H2	111.4	109.5
N1	C5	O6	122.2	120.1
N1	C5	C11	116.4	120.0
C5	N1	HN1	119.8	120.0
C3	C2	C20	106.4	109.5
C2	C3	O4	108.2	109.5
C3	C2	H2	110.1	109.5
C2	C3	H3	109.9	109.5
C2	C3	H3A	109.9	109.5
C2	C20	C22	113.6	109.4
C20	C2	H2	114.2	109.5
C2	C20	H20	108.1	109.5
C2	C20	H20A	108.1	109.5
C3	O4	P7	106.5	123.0
O4	C3	H3	109.9	109.5
O4	C3	H3A	109.9	109.5
O4	P7	O8	107.8	109.5
O4	P7	O9	108.7	109.4
O4	P7	O10	108.7	109.5
O6	C5	C11	120.7	120.0
C5	C11	C12	131.0	124.6
C5	C11	S15	125.1	124.7
O8	P7	O9	109.4	109.5
O8	P7	O10	112.5	109.5
O9	P7	O10	109.6	109.5
C12	C11	S15	103.9	110.7
C11	C12	C13	119.1	115.6
C11	C12	H12	120.4	122.2
C11	S15	C14	97.8	91.6
C12	C13	C14	115.7	112.6
C12	C13	C16	127.7	128.8
C13	C12	H12	120.5	122.2
C14	C13	C16	116.6	118.6
C13	C14	S15	103.5	109.6
C13	C14	C19	122.7	119.9
C13	C16	C17	120.2	120.5
C13	C16	H16	119.9	119.7
S15	C14	C19	133.7	130.5
C14	C19	C18	118.8	120.1
C14	C19	H19	120.6	120.0
C16	C17	C18	121.9	120.7
C17	C16	H16	119.9	119.8
C16	C17	H17	119.1	119.7
C17	C18	C19	119.7	120.2
C18	C17	H17	119.1	119.7
C17	C18	H18	120.2	119.9
C19	C18	H18	120.2	119.9
C18	C19	H19	120.6	119.9
C20	C22	C21	121.6	120.0
C20	C22	C23	119.8	120.0
C22	C20	H20	108.1	109.5
C22	C20	H20A	108.1	109.5
C22	C21	C26	120.8	120.0
C21	C22	C23	118.6	120.1
C22	C21	H21	119.6	120.0
C21	C26	C25	120.1	120.0
C26	C21	H21	119.6	120.0
C21	C26	H26	119.9	120.0
C22	C23	C24	120.6	119.9
C22	C23	H23	119.7	120.1
C23	C24	C25	120.7	120.1
C23	C24	C27	120.0	120.0
C24	C23	H23	119.7	120.0
C25	C24	C27	119.2	119.9
C24	C25	C26	119.1	120.0
C24	C25	H25	120.5	120.1
C24	C27	H27	109.5	109.5
C24	C27	H27A	109.5	109.5
C24	C27	H27B	109.5	109.4
C26	C25	H25	120.4	120.0
C25	C26	H26	119.9	120.0
H3	C3	H3A	109.0	109.5
H20	C20	H20A	110.8	109.5
H27	C27	H27A	109.5	109.5
H27	C27	H27B	109.4	109.4
H27A	C27	H27B	109.5	109.5

Torsion Angles for J8Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C5	O6	1.1	360.0
C2	N1	C5	C11	171.5	180.0
C5	N1	C2	HN1	180.0	180.3
C3	C2	N1	C20	246.1	240.0
N1	C2	C3	O4	158.1	65.0
C3	C2	N1	H2	122.0	120.0
N1	C2	C3	H3	278.1	185.0
N1	C2	C3	H3A	38.1	305.0
N1	C2	C20	C22	69.2	65.0
C20	C2	N1	H2	235.9	240.0
N1	C2	C20	H20	189.2	185.0
N1	C2	C20	H20A	309.2	305.0
C5	N1	C2	C3	134.7	85.0
C5	N1	C2	C20	248.6	205.0
C2	N1	C5	HN1	180.0	179.7
C5	N1	C2	H2	12.7	325.0
O6	C5	N1	C11	189.6	180.0
N1	C5	C11	C12	29.2	180.0
N1	C5	C11	S15	209.1	359.6
C3	C2	N1	C5	134.7	85.0
N1	C2	C3	C20	113.0	120.0
C3	C2	N1	HN1	314.7	264.7
N1	C2	C3	H2	237.2	240.0
C3	C2	C20	C22	185.1	185.0
C20	C2	C3	H2	124.3	120.0
C3	C2	C20	H20	305.1	305.0
C3	C2	C20	H20A	65.2	65.0
C2	C3	O4	P7	119.1	180.0
O4	C3	C2	H3	240.0	240.0
O4	C3	C2	H3A	120.0	120.0
H3	C3	C2	H3A	240.0	240.0
C20	C2	N1	C5	248.6	205.0
N1	C2	C20	C3	244.0	240.0
C20	C2	N1	HN1	68.6	24.7
N1	C2	C20	H2	122.3	120.0
C20	C2	C3	O4	45.2	305.0
C3	C2	C20	H2	238.3	240.0
C20	C2	C3	H3	165.2	65.0
C20	C2	C3	H3A	285.2	185.0
C2	C20	C22	C21	278.9	90.0
C2	C20	C22	C23	98.3	269.9
C22	C20	C2	H20	240.0	240.0
C22	C20	C2	H20A	120.0	120.0
H20	C20	C2	H20A	240.0	240.0
O4	C3	C2	C20	45.2	305.0
O4	C3	C2	H2	280.9	185.0
C2	C3	O4	H3	120.0	120.0
C2	C3	O4	H3A	240.0	240.0
C3	O4	P7	O8	79.2	305.0
C3	O4	P7	O9	197.7	65.0
C3	O4	P7	O10	317.0	185.0
H3	C3	O4	H3A	120.0	120.0
P7	O4	C3	H3	359.1	60.0
P7	O4	C3	H3A	239.1	300.0
O8	P7	O4	O9	241.5	240.0
O8	P7	O4	O10	122.3	120.0
O9	P7	O4	O10	240.7	240.0
N1	C5	O6	C11	170.0	180.0
O6	C5	N1	HN1	181.1	180.3
O6	C5	C11	C12	199.8	0.0
O6	C5	C11	S15	19.7	179.7
N1	C5	C11	O6	189.4	180.0
C11	C5	N1	HN1	351.5	0.3
C12	C11	C5	S15	180.1	180.4
C5	C11	C12	C13	179.3	180.0
C5	C11	C12	H12	359.4	360.0
C5	C11	S15	C14	180.5	179.9
O4	P7	O8	O9	118.0	119.9
O4	P7	O8	O10	240.1	240.0
O9	P7	O8	O10	122.1	120.0
O4	P7	O9	O8	242.5	240.0
O4	P7	O9	O10	118.7	120.0
O8	P7	O9	O10	236.2	240.0
O4	P7	O10	O8	119.4	120.0
O4	P7	O10	O9	241.3	240.0
O8	P7	O10	O9	121.9	120.0
C5	C11	C12	S15	179.9	179.7
C12	C11	S15	C14	0.4	359.6
C11	C12	C13	C14	0.5	0.0
C11	C12	C13	C16	180.5	180.0
C13	C12	C11	H12	180.0	180.0
C5	C11	S15	C12	180.1	180.3
S15	C11	C12	C13	359.4	0.3
S15	C11	C12	H12	179.4	180.3
C13	C14	S15	C11	359.9	0.4
C11	S15	C14	C19	182.6	180.0
C13	C12	C11	S15	359.4	0.3
C11	C12	C13	H12	180.0	180.0
C14	C13	C12	C16	180.0	180.0
C12	C13	C14	S15	359.8	359.7
C12	C13	C14	C19	177.5	180.0
C12	C13	C16	C17	182.7	180.0
C12	C13	C16	H16	2.7	0.0
C11	S15	C14	C13	359.9	0.4
C12	C13	C14	C16	180.0	180.0
C14	C13	C12	H12	180.5	180.0
C14	C13	C16	C17	2.7	360.0
C14	C13	C16	H16	182.7	180.0
S15	C14	C13	C19	182.4	179.7
C13	C14	C19	C18	2.2	359.9
C13	C14	C19	H19	182.2	180.0
C12	C13	C16	C14	180.0	180.0
C16	C13	C12	H12	0.5	360.0
C16	C13	C14	S15	179.9	179.7
C16	C13	C14	C19	357.5	0.1
C13	C16	C17	C18	357.3	0.0
C17	C16	C13	H16	180.0	180.0
C13	C16	C17	H17	177.3	179.9
S15	C14	C13	C16	179.9	179.7
C13	C14	S15	C19	177.2	180.4
S15	C14	C19	C18	179.0	180.3
S15	C14	C19	H19	359.0	0.4
C19	C14	C13	C16	357.5	0.1
C13	C14	C19	S15	183.2	179.6
C17	C18	C19	C14	358.1	0.1
C14	C19	C18	H18	178.1	180.0
C18	C19	C14	H19	180.0	180.0
C13	C16	C17	H16	180.0	180.0
C16	C17	C18	C19	2.2	359.9
C18	C17	C16	H17	180.0	180.1
C16	C17	C18	H18	182.2	180.0
C14	C19	C18	C17	358.1	0.1
C18	C17	C16	H16	177.3	180.0
C16	C17	C18	H17	180.0	179.9
C19	C18	C17	H18	180.0	179.9
C17	C18	C19	H19	178.1	180.0
C14	C19	C18	H19	180.0	180.0
C19	C18	C17	H17	182.2	180.1
C17	C18	C19	H18	180.0	180.1
C22	C20	C2	H2	306.8	305.0
C2	C20	C22	H20	120.0	120.0
C2	C20	C22	H20A	240.0	240.0
C20	C22	C21	C26	179.4	180.0
C21	C22	C20	C23	180.6	180.1
C20	C22	C21	H21	359.4	359.8
C20	C22	C23	C24	180.1	180.0
C20	C22	C23	H23	0.1	0.0
H20	C20	C22	H20A	120.0	120.0
C20	C22	C21	C23	179.4	179.9
C21	C22	C20	H20	158.9	330.0
C21	C22	C20	H20A	38.9	210.0
C22	C21	C26	C25	1.2	359.9
C26	C21	C22	H21	180.0	180.3
C22	C21	C26	H26	181.2	180.0
C21	C22	C23	C24	359.5	359.9
C21	C22	C23	H23	179.5	180.0
C26	C21	C22	C23	360.0	0.1
C22	C21	C26	H21	180.0	179.7
C24	C25	C26	C21	358.1	0.1
C21	C26	C25	H25	178.1	180.1
C25	C26	C21	H26	180.0	179.9
C20	C22	C23	C21	180.6	180.1
C23	C22	C20	H20	338.3	149.9
C23	C22	C20	H20A	218.3	29.9
C23	C22	C21	C26	360.0	0.1
C23	C22	C21	H21	180.0	179.8
C22	C23	C24	C25	359.8	0.1
C22	C23	C24	C27	182.7	180.0
C24	C23	C22	H23	180.0	180.0
C22	C23	C24	H23	180.0	180.0
C25	C24	C23	C27	177.1	180.1
C23	C24	C25	C26	1.4	359.9
C23	C24	C25	H25	181.4	179.9
C23	C24	C27	H27	88.5	90.0
C23	C24	C27	H27A	208.5	210.0
C23	C24	C27	H27B	328.6	330.1
C21	C26	C25	C24	358.1	0.1
C23	C24	C25	C27	182.9	179.9
C25	C24	C23	H23	179.8	180.0
C25	C24	C27	H27	271.4	269.9
C25	C24	C27	H27A	31.4	30.0
C25	C24	C27	H27B	151.4	150.0
C26	C25	C24	H25	180.0	180.0
C24	C25	C26	H26	178.1	180.0
C23	C24	C27	C25	177.2	180.1
C27	C24	C23	H23	2.7	359.9
C27	C24	C25	C26	178.5	180.0
C27	C24	C25	H25	358.5	0.0
H27	C27	C24	H27A	240.0	240.0
H27	C27	C24	H27B	120.0	120.0
H27A	C27	C24	H27B	240.0	240.0
C25	C26	C21	H21	181.2	180.2
C21	C26	C25	H26	180.0	180.1
C26	C25	C24	C27	178.5	180.0
C24	C25	C26	H25	180.0	180.0
C2	N1	HN1	C5	180.0	180.3
HN1	N1	C2	C3	314.7	264.7
HN1	N1	C2	C20	68.6	24.7
HN1	N1	C2	H2	192.7	144.7
HN1	N1	C5	O6	181.1	180.3
HN1	N1	C5	C11	351.5	0.3
H2	C2	N1	C5	12.7	325.0
N1	C2	H2	C3	121.6	120.0
N1	C2	H2	C20	241.2	240.0
H2	C2	N1	HN1	192.7	144.7
C3	C2	H2	C20	119.6	120.0
H2	C2	C3	O4	280.9	185.0
H2	C2	C3	H3	40.9	305.0
H2	C2	C3	H3A	160.9	65.0
H2	C2	C20	C22	306.8	305.0
H2	C2	C20	H20	66.8	65.0
H2	C2	C20	H20A	186.9	185.0
H3	C3	C2	C20	165.2	65.0
C2	C3	H3	O4	241.0	240.0
H3	C3	C2	H2	40.9	305.0
C2	C3	H3	H3A	120.5	120.0
H3	C3	O4	P7	359.1	60.0
O4	C3	H3	H3A	239.5	240.0
H3A	C3	C2	C20	285.2	185.0
C2	C3	H3A	O4	119.0	120.0
H3A	C3	C2	H2	160.9	65.0
C2	C3	H3A	H3	239.5	240.0
H3A	C3	O4	P7	239.1	300.0
O4	C3	H3A	H3	120.5	120.0
H12	C12	C11	S15	179.4	180.3
C11	C12	H12	C13	180.0	180.0
H12	C12	C13	C14	180.5	180.0
H12	C12	C13	C16	0.5	360.0
C13	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	177.3	180.0
H16	C16	C17	H17	357.3	359.9
C16	C17	H17	C18	180.0	180.1
H17	C17	C16	H16	357.3	359.9
H17	C17	C18	C19	182.2	180.1
H17	C17	C18	H18	2.2	0.1
C17	C18	H18	C19	180.0	179.9
H18	C18	C17	H17	2.2	0.1
H18	C18	C19	H19	358.1	360.0
C14	C19	H19	C18	180.0	180.0
H19	C19	C18	H18	358.1	360.0
C2	C20	H20	C22	236.6	240.0
H20	C20	C2	H2	66.8	65.0
C2	C20	H20	H20A	118.3	120.0
H20	C20	C22	C21	158.9	330.0
H20	C20	C22	C23	338.3	149.9
C22	C20	H20	H20A	241.7	240.0
C2	C20	H20A	C22	123.3	120.0
H20A	C20	C2	H2	186.9	185.0
C2	C20	H20A	H20	241.7	240.0
H20A	C20	C22	C21	38.9	210.0
H20A	C20	C22	C23	218.3	29.9
C22	C20	H20A	H20	118.3	120.0
C22	C21	H21	C26	180.0	180.3
H21	C21	C22	C23	180.0	179.8
H21	C21	C26	C25	181.2	180.2
H21	C21	C26	H26	1.2	0.2
C22	C23	H23	C24	180.0	180.0
H23	C23	C24	C25	179.8	180.0
H23	C23	C24	C27	2.7	359.9
H25	C25	C24	C27	358.5	0.0
C24	C25	H25	C26	180.0	180.0
H25	C25	C26	H26	358.1	0.0
C21	C26	H26	C25	180.0	179.9
H26	C26	C21	H21	1.2	0.2
H26	C26	C25	H25	358.1	0.0
C24	C27	H27	H27A	120.0	120.0
C24	C27	H27	H27B	240.0	240.0
H27A	C27	H27	H27B	120.0	120.0
C24	C27	H27A	H27	240.0	240.0
C24	C27	H27A	H27B	120.0	120.0
H27	C27	H27A	H27B	240.0	240.0
C24	C27	H27B	H27	120.0	120.0
C24	C27	H27B	H27A	240.0	240.0
H27	C27	H27B	H27A	120.0	120.0