PDB Chemical Component J77

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J77

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.515 1.507
C1 H11 1.114 1.089
C1 H12 1.115 1.091
C1 H13 1.116 1.090
C2 C3 1.386 1.388
C2 N3 1.331 1.318
C3 C4 1.405 1.386
C3 H3 1.103 1.079
C4 C5 1.398 1.395
C4 H4 1.103 1.081
C5 N4 1.349 1.324
C5 N6 1.339 1.391
N4 N3 1.347 1.284
N6 C7 1.480 1.467
N6 C11 1.474 1.466
C7 C8 1.537 1.530
C7 H71 1.116 1.090
C7 H72 1.115 1.090
C8 C9 1.500 1.532
C8 H81 1.116 1.090
C8 H82 1.115 1.089
C9 C10 1.489 1.532
C9 C12 1.521 1.530
C9 H9 1.114 1.090
C10 C11 1.524 1.529
C10 H101 1.116 1.090
C10 H102 1.115 1.089
C11 H111 1.114 1.089
C11 H112 1.115 1.090
C12 C13 1.516 1.530
C12 H121 1.115 1.091
C12 H122 1.115 1.089
C13 O14 1.425 1.429
C13 H131 1.116 1.089
C13 H132 1.115 1.091
O14 C15 1.357 1.357
C15 C16 1.383 1.390
C15 C20 1.386 1.391
C16 C17 1.399 1.377
C16 H16 1.102 1.080
C17 C18 1.389 1.398
C17 H17 1.102 1.080
C18 C19 1.404 1.398
C18 C21 1.380 1.474
C19 C20 1.391 1.376
C19 H19 1.104 1.080
C20 H20 1.104 1.080
C21 O22 1.240 1.215
C21 O23 1.439 1.348
O23 C24 1.396 1.452
C24 C25 1.568 1.530
C24 H241 1.114 1.090
C24 H242 1.116 1.089
C25 H251 1.115 1.090
C25 H252 1.115 1.089
C25 H253 1.115 1.090

Bond Angles for J77

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H11 122.0 109.5
C2 C1 H12 107.8 109.4
C2 C1 H13 107.7 109.5
C1 C2 C3 121.9 120.0
C1 C2 N3 117.1 120.0
H11 C1 H12 107.8 109.5
H11 C1 H13 107.7 109.4
H12 C1 H13 102.1 109.5
C3 C2 N3 120.9 120.0
C2 C3 C4 118.0 118.0
C2 C3 H3 120.3 121.0
C2 N3 N4 120.4 122.3
C4 C3 H3 121.7 121.0
C3 C4 C5 120.2 117.9
C3 C4 H4 120.2 121.0
C5 C4 H4 119.7 121.1
C4 C5 N4 117.4 119.7
C4 C5 N6 121.8 120.1
N4 C5 N6 120.8 120.2
C5 N4 N3 123.2 122.1
C5 N6 C7 120.8 106.7
C5 N6 C11 116.0 106.7
C7 N6 C11 123.1 107.3
N6 C7 C8 115.0 109.8
N6 C7 H71 110.2 109.4
N6 C7 H72 110.2 109.4
N6 C11 C10 116.1 109.8
N6 C11 H111 109.8 109.4
N6 C11 H112 109.8 109.4
C8 C7 H71 110.2 109.4
C8 C7 H72 110.2 109.4
C7 C8 C9 114.1 109.2
C7 C8 H81 110.5 109.5
C7 C8 H82 110.5 109.5
H71 C7 H72 100.0 109.4
C9 C8 H81 110.6 109.5
C9 C8 H82 110.5 109.5
C8 C9 C10 110.6 108.9
C8 C9 C12 115.2 109.5
C8 C9 H9 107.0 109.5
H81 C8 H82 99.7 109.6
C10 C9 C12 115.8 109.6
C10 C9 H9 106.3 109.6
C9 C10 C11 116.1 109.2
C9 C10 H101 109.8 109.5
C9 C10 H102 109.8 109.4
C12 C9 H9 100.6 109.6
C9 C12 C13 121.6 109.4
C9 C12 H121 107.9 109.5
C9 C12 H122 107.9 109.5
C11 C10 H101 109.8 109.5
C11 C10 H102 109.8 109.6
C10 C11 H111 109.8 109.4
C10 C11 H112 109.8 109.4
H101 C10 H102 100.4 109.6
H111 C11 H112 100.4 109.3
C13 C12 H121 107.9 109.4
C13 C12 H122 107.9 109.5
C12 C13 O14 110.8 109.4
C12 C13 H131 111.8 109.5
C12 C13 H132 111.7 109.4
H121 C12 H122 102.0 109.5
O14 C13 H131 111.7 109.5
O14 C13 H132 111.7 109.4
C13 O14 C15 113.8 106.8
H131 C13 H132 98.6 109.5
O14 C15 C16 117.9 119.9
O14 C15 C20 119.4 119.9
C16 C15 C20 120.6 120.2
C15 C16 C17 120.0 120.1
C15 C16 H16 119.4 119.9
C15 C20 C19 119.1 120.0
C15 C20 H20 120.3 119.9
C17 C16 H16 120.6 119.9
C16 C17 C18 120.4 119.9
C16 C17 H17 120.2 120.0
C18 C17 H17 119.4 120.1
C17 C18 C19 118.4 119.8
C17 C18 C21 120.7 120.0
C19 C18 C21 119.3 120.1
C18 C19 C20 121.3 120.0
C18 C19 H19 119.8 120.0
C18 C21 O22 119.2 120.0
C18 C21 O23 118.7 120.0
C20 C19 H19 118.8 120.0
C19 C20 H20 120.6 120.0
O22 C21 O23 122.1 120.0
C21 O23 C24 119.0 120.1
O23 C24 C25 125.6 109.5
O23 C24 H241 106.5 109.4
O23 C24 H242 106.5 109.5
C25 C24 H241 106.5 109.5
C25 C24 H242 106.5 109.5
C24 C25 H251 125.6 109.4
C24 C25 H252 106.5 109.5
C24 C25 H253 106.5 109.5
H241 C24 H242 103.1 109.5
H251 C25 H252 106.5 109.5
H251 C25 H253 106.6 109.5
H252 C25 H253 103.0 109.4

Torsion Angles for J77

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H11 C1 C2 H12 234.7 240.0
H11 C1 C2 H13 125.2 120.0
H12 C1 C2 H13 250.5 240.0
C3 C2 C1 N3 181.6 179.9
C1 C2 C3 C4 178.0 180.0
C1 C2 C3 H3 358.0 0.1
C1 C2 N3 N4 181.6 179.8
C2 C1 H11 H12 125.3 120.0
C2 C1 H11 H13 234.8 240.0
H11 C1 C2 C3 179.9 329.9
H11 C1 C2 N3 358.3 150.0
H12 C1 H11 H13 109.5 120.0
C2 C1 H12 H11 226.6 240.0
C2 C1 H12 H13 113.3 120.0
H12 C1 C2 C3 305.3 89.9
H12 C1 C2 N3 123.6 270.0
H11 C1 H12 H13 246.7 240.0
C2 C1 H13 H11 133.3 120.0
C2 C1 H13 H12 246.7 240.0
H13 C1 C2 C3 54.7 210.0
H13 C1 C2 N3 233.1 30.1
H11 C1 H13 H12 113.4 120.0
C3 C2 C1 H11 179.9 329.9
C3 C2 C1 H12 305.3 89.9
C3 C2 C1 H13 54.7 210.0
C1 C2 C3 N3 178.3 180.1
C3 C2 N3 N4 0.0 359.9
C4 C3 C2 H3 180.0 179.9
C2 C3 C4 C5 0.5 0.1
C2 C3 C4 H4 180.5 180.0
N3 C2 C1 H11 358.3 150.0
N3 C2 C1 H12 123.6 270.0
N3 C2 C1 H13 233.1 30.1
C1 C2 N3 C3 181.6 179.9
N3 C2 C3 C4 359.7 359.9
N3 C2 C3 H3 179.7 180.0
C5 N4 N3 C2 0.1 0.4
C4 C3 C2 N3 359.7 359.9
C2 C3 C4 H3 180.0 180.1
C5 C4 C3 H4 180.0 180.1
C3 C4 C5 N4 359.6 0.2
C3 C4 C5 N6 181.3 180.0
H3 C3 C2 N3 179.7 180.0
C2 C3 H3 C4 180.0 179.9
H3 C3 C4 C5 180.5 180.0
H3 C3 C4 H4 0.5 359.9
C5 C4 C3 H3 180.5 180.0
C3 C4 C5 H4 180.0 179.9
N4 C5 C4 N6 178.2 180.2
C4 C5 N4 N3 0.1 359.6
C4 C5 N6 C7 6.3 180.0
C4 C5 N6 C11 185.0 294.4
H4 C4 C3 H3 0.5 359.9
C3 C4 H4 C5 180.0 180.1
H4 C4 C5 N4 179.6 180.2
H4 C4 C5 N6 1.3 0.0
C2 N3 N4 C5 0.1 0.4
N4 C5 C4 H4 179.6 180.2
C4 C5 N4 N6 181.7 179.8
N4 C5 N6 C7 188.1 359.8
N4 C5 N6 C11 6.8 114.2
N6 C5 C4 H4 1.3 0.0
C4 C5 N6 N4 178.2 180.2
N6 C5 N4 N3 178.4 179.8
C7 N6 C5 C11 181.3 245.6
C5 N6 C7 C8 188.8 179.7
C5 N6 C7 H71 314.0 59.6
C5 N6 C7 H72 63.5 299.8
C5 N6 C11 C10 175.6 180.3
C5 N6 C11 H111 300.9 300.5
C5 N6 C11 H112 50.3 60.2
N3 N4 C5 N6 178.4 179.8
C5 N6 C7 C11 178.6 114.1
C7 N6 C11 C10 354.3 294.3
C7 N6 C11 H111 119.6 54.5
C7 N6 C11 H112 229.0 174.2
C8 C7 N6 H71 234.8 120.1
C8 C7 N6 H72 125.3 239.9
N6 C7 C8 C9 324.5 298.6
N6 C7 C8 H81 89.8 178.7
N6 C7 C8 H82 199.3 58.5
H71 C7 N6 H72 250.5 119.9
C5 N6 C11 C7 181.3 246.0
C11 N6 C7 C8 10.2 65.6
C11 N6 C7 H71 135.4 305.6
C11 N6 C7 H72 244.9 185.7
C9 C10 C11 N6 26.9 61.4
N6 C11 C10 H101 261.6 301.5
N6 C11 C10 H102 152.1 181.3
C10 C11 N6 H111 234.7 239.8
C10 C11 N6 H112 125.3 120.1
H111 C11 N6 H112 250.6 240.3
C8 C7 N6 C11 10.2 65.6
N6 C7 C8 H71 125.3 239.9
N6 C7 C8 H72 234.7 120.1
H71 C7 C8 H72 109.4 240.2
C9 C8 C7 H81 234.7 119.9
C9 C8 C7 H82 125.3 240.1
C7 C8 C9 C10 56.0 55.6
C7 C8 C9 C12 189.7 175.4
C7 C8 C9 H9 300.6 295.7
H81 C8 C7 H82 250.6 120.2
H71 C7 N6 C11 135.4 305.6
N6 C7 H71 C8 232.1 120.3
N6 C7 H71 H72 116.0 240.1
C8 C7 H71 H72 244.0 119.8
H71 C7 C8 C9 199.3 58.7
H71 C7 C8 H81 324.6 298.8
H71 C7 C8 H82 74.0 178.6
H72 C7 N6 C11 244.9 185.7
N6 C7 H72 C8 128.0 239.7
N6 C7 H72 H71 244.0 119.9
C8 C7 H72 H71 116.0 240.2
H72 C7 C8 C9 89.8 178.5
H72 C7 C8 H81 215.1 58.6
H72 C7 C8 H82 324.6 298.5
C9 C8 C7 H71 199.3 58.7
C9 C8 C7 H72 89.8 178.5
C7 C8 C9 H81 125.2 240.1
C7 C8 C9 H82 234.7 119.9
H81 C8 C9 H82 109.5 239.8
C10 C9 C8 C12 226.4 240.2
C10 C9 C8 H9 115.4 119.9
C8 C9 C10 C11 308.2 304.4
C8 C9 C10 H101 73.5 64.3
C8 C9 C10 H102 182.9 184.5
C12 C9 C8 H9 249.1 239.8
C8 C9 C12 C13 295.4 180.0
C8 C9 C12 H121 60.7 60.1
C8 C9 C12 H122 170.2 300.0
H81 C8 C7 H71 324.6 298.8
H81 C8 C7 H72 215.1 58.6
C7 C8 H81 C9 232.8 119.7
C7 C8 H81 H82 116.4 239.9
C9 C8 H81 H82 243.6 120.2
H81 C8 C9 C10 290.8 175.5
H81 C8 C9 C12 64.4 295.3
H81 C8 C9 H9 175.3 55.5
H82 C8 C7 H71 74.0 178.6
H82 C8 C7 H72 324.6 298.5
C7 C8 H82 C9 127.3 240.3
C7 C8 H82 H81 243.7 120.1
C9 C8 H82 H81 116.4 239.8
H82 C8 C9 C10 181.3 295.7
H82 C8 C9 C12 314.9 55.5
H82 C8 C9 H9 65.9 175.8
N6 C11 C10 C9 26.9 61.4
C10 C9 C8 H81 290.8 175.5
C10 C9 C8 H82 181.3 295.7
C8 C9 C10 C12 133.4 119.8
C8 C9 C10 H9 244.1 240.1
C12 C9 C10 H9 110.8 120.3
C10 C9 C12 C13 66.7 299.4
C10 C9 C12 H121 191.9 179.5
C10 C9 C12 H122 301.4 59.4
C11 C10 C9 H101 234.7 240.1
C11 C10 C9 H102 125.3 120.0
C9 C10 C11 H111 261.6 301.3
C9 C10 C11 H112 152.1 181.5
H101 C10 C9 H102 250.5 239.9
C12 C9 C8 H81 64.4 295.3
C12 C9 C8 H82 314.9 55.5
C8 C9 C12 C10 228.8 240.6
C8 C9 C12 H9 114.7 120.2
C10 C9 C12 H9 245.9 239.6
C12 C9 C10 C11 174.8 184.6
C12 C9 C10 H101 300.1 304.5
C12 C9 C10 H102 49.6 64.7
C13 C12 C9 H121 234.8 120.0
C13 C12 C9 H122 125.3 240.0
C9 C12 C13 O14 274.7 180.1
C9 C12 C13 H131 39.9 60.0
C9 C12 C13 H132 149.4 300.0
H121 C12 C9 H122 250.5 120.1
H9 C9 C8 H81 175.3 55.5
H9 C9 C8 H82 65.9 175.8
C8 C9 H9 C10 118.3 119.5
C8 C9 H9 C12 239.3 239.8
C10 C9 H9 C12 121.0 120.3
H9 C9 C10 C11 64.1 64.3
H9 C9 C10 H101 189.3 184.2
H9 C9 C10 H102 298.8 304.3
H9 C9 C12 C13 180.8 59.8
H9 C9 C12 H121 306.0 299.9
H9 C9 C12 H122 55.5 179.8
N6 C11 C10 H111 125.3 120.1
N6 C11 C10 H112 234.7 239.9
C11 C10 C9 C12 174.8 184.6
C11 C10 C9 H9 64.1 64.3
C9 C10 C11 H101 125.3 119.9
C9 C10 C11 H102 234.7 240.1
H101 C10 C11 H102 109.5 120.2
H111 C11 C10 H112 109.5 119.8
H101 C10 C9 C12 300.1 304.5
H101 C10 C9 H9 189.3 184.2
C9 C10 H101 C11 231.2 240.3
C9 C10 H101 H102 115.6 120.0
C11 C10 H101 H102 244.4 239.8
H101 C10 C11 H111 136.3 181.4
H101 C10 C11 H112 26.9 61.6
H102 C10 C9 C12 49.6 64.7
H102 C10 C9 H9 298.8 304.3
C9 C10 H102 C11 128.8 119.7
C9 C10 H102 H101 244.4 239.9
C11 C10 H102 H101 115.6 120.2
H102 C10 C11 H111 26.9 61.1
H102 C10 C11 H112 277.4 301.4
N6 C11 H111 C10 231.2 239.6
N6 C11 H111 H112 115.6 119.8
H111 C11 C10 H101 136.3 181.4
H111 C11 C10 H102 26.9 61.1
C10 C11 H111 H112 244.4 240.2
N6 C11 H112 C10 128.8 120.4
N6 C11 H112 H111 244.4 240.2
H112 C11 C10 H101 26.9 61.6
H112 C11 C10 H102 277.4 301.4
C10 C11 H112 H111 115.6 119.8
C13 C12 C9 H9 180.8 59.8
C9 C12 C13 H121 125.2 240.0
C9 C12 C13 H122 234.7 120.0
H121 C12 C13 H122 109.5 240.0
O14 C13 C12 H131 234.7 120.1
O14 C13 C12 H132 125.3 240.1
C12 C13 O14 C15 245.2 180.0
H131 C13 C12 H132 250.6 120.0
H121 C12 C9 H9 306.0 299.9
C9 C12 H121 C13 227.0 119.9
C9 C12 H121 H122 113.5 239.9
C13 C12 H121 H122 246.5 120.0
H121 C12 C13 O14 149.4 300.1
H121 C12 C13 H131 274.7 180.0
H121 C12 C13 H132 24.1 60.0
H122 C12 C9 H9 55.5 179.8
C9 C12 H122 C13 133.0 240.0
C9 C12 H122 H121 246.5 120.1
C13 C12 H122 H121 113.5 240.0
H122 C12 C13 O14 39.9 60.1
H122 C12 C13 H131 165.2 300.0
H122 C12 C13 H132 274.6 180.0
O14 C13 C12 H121 149.4 300.1
O14 C13 C12 H122 39.9 60.1
C12 C13 O14 H131 125.3 239.9
C12 C13 O14 H132 234.7 119.9
H131 C13 O14 H132 109.4 240.0
C13 O14 C15 C16 110.0 180.0
C13 O14 C15 C20 306.4 0.1
H131 C13 C12 H121 274.7 180.0
H131 C13 C12 H122 165.2 300.0
C12 C13 H131 O14 235.3 120.0
C12 C13 H131 H132 117.6 240.0
O14 C13 H131 H132 242.4 120.0
H131 C13 O14 C15 119.9 300.0
H132 C13 C12 H121 24.1 60.0
H132 C13 C12 H122 274.6 180.0
C12 C13 H132 O14 124.7 240.1
C12 C13 H132 H131 242.3 120.0
O14 C13 H132 H131 117.6 240.0
H132 C13 O14 C15 10.5 60.0
C15 O14 C13 H131 119.9 300.0
C15 O14 C13 H132 10.5 60.0
C16 C15 O14 C20 163.6 179.9
O14 C15 C16 C17 197.2 180.1
O14 C15 C16 H16 17.3 0.0
O14 C15 C20 C19 162.1 179.7
O14 C15 C20 H20 342.1 359.9
O14 C15 C16 C20 196.6 180.1
C16 C15 C20 C19 359.0 359.8
C16 C15 C20 H20 178.9 180.0
C17 C16 C15 H16 180.0 180.0
C15 C16 C17 C18 0.4 359.9
C15 C16 C17 H17 180.5 180.0
O14 C15 C20 C16 163.1 179.9
C20 C15 C16 C17 0.6 359.9
C20 C15 C16 H16 180.6 179.9
C18 C19 C20 C15 0.4 0.5
C15 C20 C19 H19 180.4 179.9
C19 C20 C15 H20 180.0 179.9
C17 C16 C15 C20 0.6 359.9
C15 C16 C17 H16 180.0 180.0
C18 C17 C16 H17 179.9 179.9
C16 C17 C18 C19 358.9 0.4
C16 C17 C18 C21 165.0 180.0
H16 C16 C15 C20 180.6 179.9
C15 C16 H16 C17 180.0 180.0
H16 C16 C17 C18 180.4 180.0
H16 C16 C17 H17 0.5 0.1
C18 C17 C16 H16 180.4 180.0
C16 C17 C18 H17 180.1 180.1
C19 C18 C17 C21 193.9 180.3
C17 C18 C19 C20 0.7 359.4
C17 C18 C19 H19 180.7 180.0
C17 C18 C21 O22 179.3 0.0
C17 C18 C21 O23 1.8 180.1
H17 C17 C16 H16 0.5 0.1
C16 C17 H17 C18 179.9 179.9
H17 C17 C18 C19 178.9 180.3
H17 C17 C18 C21 344.9 360.0
C15 C20 C19 C18 0.4 0.5
C19 C18 C17 H17 178.9 180.3
C17 C18 C19 C21 166.3 179.7
C19 C18 C21 O22 345.2 179.7
C19 C18 C21 O23 167.7 359.7
C20 C19 C18 H19 180.0 179.4
C18 C19 C20 H20 180.4 180.4
C21 C18 C17 H17 344.9 360.0
C17 C18 C21 C19 194.0 180.3
C21 C18 C19 C20 194.4 179.7
C21 C18 C19 H19 14.4 0.3
O22 C21 C18 O23 177.5 180.0
C18 C21 O23 C24 179.4 180.0
C15 C20 C19 H20 180.0 180.1
C20 C19 C18 C21 194.4 179.7
C18 C19 C20 H19 180.0 180.6
H19 C19 C18 C21 14.4 0.3
C18 C19 H19 C20 180.0 179.4
H19 C19 C20 H20 0.4 359.8
C15 C20 H20 C19 180.0 179.9
H20 C20 C19 H19 0.4 359.8
C18 C21 O22 O23 182.6 180.0
O22 C21 O23 C24 2.0 0.0
C18 C21 O23 O22 177.4 180.0
C21 O23 C24 C25 59.7 180.0
C21 O23 C24 H241 185.0 60.0
C21 O23 C24 H242 294.5 300.0
C25 C24 O23 H241 234.7 120.0
C25 C24 O23 H242 125.2 240.0
O23 C24 C25 H251 180.1 180.0
O23 C24 C25 H252 305.3 300.0
O23 C24 C25 H253 54.7 60.0
H241 C24 O23 H242 250.5 120.0
O23 C24 C25 H241 125.2 240.0
O23 C24 C25 H242 234.8 120.0
H241 C24 C25 H242 109.6 240.0
H251 C25 C24 H252 234.8 240.0
H251 C25 C24 H253 125.3 120.0
H252 C25 C24 H253 250.5 240.0
O23 C24 H241 C25 223.8 120.0
O23 C24 H241 H242 111.9 240.0
C25 C24 H241 H242 248.1 120.0
H241 C24 C25 H251 54.8 300.0
H241 C24 C25 H252 180.0 60.0
H241 C24 C25 H253 289.5 180.0
O23 C24 H242 C25 136.1 240.0
O23 C24 H242 H241 248.1 120.0
C25 C24 H242 H241 112.0 240.0
H242 C24 C25 H251 305.3 60.0
H242 C24 C25 H252 70.5 180.0
H242 C24 C25 H253 179.9 300.0
H251 C25 C24 H241 54.8 300.0
H251 C25 C24 H242 305.3 60.0
C24 C25 H251 H252 125.2 120.0
C24 C25 H251 H253 234.7 240.0
H252 C25 H251 H253 109.5 120.0
H252 C25 C24 H241 180.0 60.0
H252 C25 C24 H242 70.5 180.0
C24 C25 H252 H251 223.9 240.0
C24 C25 H252 H253 111.9 120.0
H251 C25 H252 H253 248.0 240.0
H253 C25 C24 H241 289.5 180.0
H253 C25 C24 H242 179.9 300.0
C24 C25 H253 H251 136.2 120.0
C24 C25 H253 H252 248.1 240.0
H251 C25 H253 H252 111.9 120.0