PDB Chemical Component J71
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for J71
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.351 |
1.318 |
| N1 |
C6 |
1.354 |
1.330 |
| C2 |
N3 |
1.348 |
1.318 |
| N3 |
C4 |
1.361 |
1.331 |
| C4 |
C5 |
1.440 |
1.392 |
| C4 |
N7 |
1.422 |
1.386 |
| C5 |
C6 |
1.450 |
1.389 |
| C5 |
N18 |
1.515 |
1.480 |
| C6 |
O21 |
1.514 |
1.356 |
| N7 |
C23 |
1.408 |
1.465 |
| C8 |
C9 |
1.415 |
1.383 |
| C8 |
C13 |
1.412 |
1.382 |
| C8 |
C23 |
1.519 |
1.507 |
| C9 |
C10 |
1.442 |
1.382 |
| C10 |
C11 |
1.422 |
1.382 |
| C11 |
C12 |
1.389 |
1.382 |
| C11 |
S14 |
1.727 |
1.761 |
| C12 |
C13 |
1.403 |
1.382 |
| S14 |
O15 |
1.416 |
1.421 |
| S14 |
O16 |
1.468 |
1.421 |
| S14 |
N17 |
1.676 |
1.656 |
| N18 |
O19 |
1.172 |
1.218 |
| N18 |
O20 |
1.326 |
1.217 |
| O21 |
C22 |
1.431 |
1.430 |
| C2 |
H2 |
1.081 |
1.080 |
| N7 |
HN7 |
1.000 |
0.970 |
| C9 |
H9 |
1.080 |
1.081 |
| C10 |
H10 |
1.080 |
1.080 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
| N17 |
HN17 |
1.000 |
0.970 |
| N17 |
HN1A |
1.000 |
0.970 |
| C22 |
H22 |
1.101 |
1.089 |
| C22 |
H22A |
1.100 |
1.090 |
| C22 |
H22B |
1.100 |
1.090 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.090 |
Bond Angles for J71
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
123.8 |
120.9 |
| N1 |
C2 |
N3 |
121.7 |
121.9 |
| N1 |
C2 |
H2 |
119.2 |
119.0 |
| N1 |
C6 |
C5 |
116.2 |
119.1 |
| N1 |
C6 |
O21 |
113.1 |
120.4 |
| C2 |
N3 |
C4 |
119.8 |
120.8 |
| N3 |
C2 |
H2 |
119.2 |
119.1 |
| N3 |
C4 |
C5 |
120.0 |
119.1 |
| N3 |
C4 |
N7 |
118.6 |
120.4 |
| C5 |
C4 |
N7 |
121.4 |
120.5 |
| C4 |
C5 |
C6 |
118.5 |
118.2 |
| C4 |
C5 |
N18 |
115.1 |
120.9 |
| C4 |
N7 |
C23 |
122.2 |
120.0 |
| C4 |
N7 |
HN7 |
105.4 |
120.0 |
| C6 |
C5 |
N18 |
126.4 |
120.9 |
| C5 |
C6 |
O21 |
130.7 |
120.4 |
| C5 |
N18 |
O19 |
122.0 |
120.0 |
| C5 |
N18 |
O20 |
122.1 |
120.0 |
| C6 |
O21 |
C22 |
125.8 |
117.0 |
| N7 |
C23 |
C8 |
112.6 |
109.5 |
| C23 |
N7 |
HN7 |
105.4 |
120.0 |
| N7 |
C23 |
H23 |
108.4 |
109.5 |
| N7 |
C23 |
H23A |
108.5 |
109.5 |
| C9 |
C8 |
C13 |
121.3 |
120.0 |
| C9 |
C8 |
C23 |
125.7 |
120.0 |
| C8 |
C9 |
C10 |
116.8 |
120.0 |
| C8 |
C9 |
H9 |
121.6 |
120.0 |
| C13 |
C8 |
C23 |
112.9 |
120.0 |
| C8 |
C13 |
C12 |
121.6 |
120.0 |
| C8 |
C13 |
H13 |
119.2 |
120.0 |
| C8 |
C23 |
H23 |
108.5 |
109.5 |
| C8 |
C23 |
H23A |
108.5 |
109.4 |
| C9 |
C10 |
C11 |
120.0 |
120.0 |
| C10 |
C9 |
H9 |
121.6 |
120.0 |
| C9 |
C10 |
H10 |
120.0 |
120.0 |
| C10 |
C11 |
C12 |
122.0 |
120.0 |
| C10 |
C11 |
S14 |
116.9 |
120.0 |
| C11 |
C10 |
H10 |
120.0 |
120.0 |
| C12 |
C11 |
S14 |
120.8 |
120.0 |
| C11 |
C12 |
C13 |
117.9 |
120.0 |
| C11 |
C12 |
H12 |
121.0 |
120.0 |
| C11 |
S14 |
O15 |
111.3 |
106.4 |
| C11 |
S14 |
O16 |
106.3 |
106.4 |
| C11 |
S14 |
N17 |
101.9 |
107.2 |
| C13 |
C12 |
H12 |
121.1 |
120.0 |
| C12 |
C13 |
H13 |
119.2 |
120.0 |
| O15 |
S14 |
O16 |
118.6 |
123.1 |
| O15 |
S14 |
N17 |
105.6 |
106.4 |
| O16 |
S14 |
N17 |
111.9 |
106.4 |
| S14 |
N17 |
HN17 |
109.5 |
120.0 |
| S14 |
N17 |
HN1A |
109.5 |
120.1 |
| O19 |
N18 |
O20 |
115.9 |
120.0 |
| O21 |
C22 |
H22 |
109.5 |
109.5 |
| O21 |
C22 |
H22A |
109.4 |
109.5 |
| O21 |
C22 |
H22B |
109.5 |
109.4 |
| HN17 |
N17 |
HN1A |
109.4 |
119.9 |
| H22 |
C22 |
H22A |
109.4 |
109.5 |
| H22 |
C22 |
H22B |
109.4 |
109.5 |
| H22A |
C22 |
H22B |
109.5 |
109.5 |
| H23 |
C23 |
H23A |
110.5 |
109.5 |
Torsion Angles for J71
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
1.5 |
360.0 |
| C2 |
N1 |
C6 |
O21 |
181.7 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
1.0 |
0.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
357.9 |
360.0 |
| C6 |
N1 |
C2 |
H2 |
178.0 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
0.1 |
0.0 |
| N1 |
C6 |
C5 |
N18 |
179.8 |
180.0 |
| C5 |
C6 |
N1 |
O21 |
179.8 |
180.0 |
| N1 |
C6 |
O21 |
C22 |
296.3 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
357.9 |
360.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.5 |
0.0 |
| C2 |
N3 |
C4 |
N7 |
180.1 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
181.0 |
180.0 |
| C5 |
C4 |
N3 |
N7 |
180.5 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
359.0 |
360.0 |
| N3 |
C4 |
C5 |
N18 |
179.2 |
180.0 |
| N3 |
C4 |
N7 |
C23 |
0.9 |
0.0 |
| N3 |
C4 |
N7 |
HN7 |
120.9 |
179.9 |
| N1 |
C6 |
C5 |
C4 |
0.1 |
0.0 |
| N3 |
C4 |
C5 |
N7 |
179.5 |
179.9 |
| C5 |
C4 |
N7 |
C23 |
180.4 |
180.0 |
| C5 |
C4 |
N7 |
HN7 |
300.5 |
359.9 |
| C6 |
C5 |
C4 |
N18 |
179.8 |
180.0 |
| C4 |
C5 |
C6 |
O21 |
179.8 |
180.0 |
| C4 |
C5 |
N18 |
O19 |
293.6 |
90.0 |
| C4 |
C5 |
N18 |
O20 |
115.3 |
270.0 |
| N3 |
C4 |
N7 |
C5 |
180.5 |
180.1 |
| N7 |
C4 |
C5 |
C6 |
179.4 |
180.0 |
| N7 |
C4 |
C5 |
N18 |
359.7 |
0.0 |
| C4 |
N7 |
C23 |
C8 |
160.5 |
179.9 |
| C23 |
N7 |
C4 |
HN7 |
240.0 |
180.1 |
| C4 |
N7 |
C23 |
H23 |
280.5 |
300.0 |
| C4 |
N7 |
C23 |
H23A |
40.5 |
60.0 |
| N1 |
C6 |
C5 |
O21 |
180.2 |
180.0 |
| C6 |
C5 |
C4 |
N7 |
179.4 |
180.0 |
| C4 |
C5 |
C6 |
N18 |
180.3 |
180.0 |
| C6 |
C5 |
N18 |
O19 |
113.9 |
270.0 |
| C6 |
C5 |
N18 |
O20 |
295.6 |
90.0 |
| C5 |
C6 |
O21 |
C22 |
116.5 |
180.0 |
| N18 |
C5 |
C4 |
N7 |
359.7 |
0.0 |
| C4 |
C5 |
N18 |
C6 |
179.7 |
180.0 |
| N18 |
C5 |
C6 |
O21 |
359.5 |
0.0 |
| O19 |
N18 |
C5 |
O20 |
178.3 |
180.0 |
| N1 |
C6 |
O21 |
C5 |
179.8 |
180.0 |
| O21 |
C6 |
C5 |
N18 |
359.5 |
0.0 |
| C6 |
O21 |
C22 |
H22 |
180.0 |
300.0 |
| C6 |
O21 |
C22 |
H22A |
300.0 |
60.0 |
| C6 |
O21 |
C22 |
H22B |
60.0 |
180.0 |
| C4 |
N7 |
C23 |
HN7 |
120.0 |
179.9 |
| C9 |
C8 |
C23 |
N7 |
334.9 |
90.0 |
| C13 |
C8 |
C23 |
N7 |
152.3 |
269.8 |
| C8 |
C23 |
N7 |
H23 |
240.0 |
240.0 |
| C8 |
C23 |
N7 |
H23A |
120.0 |
119.9 |
| H23 |
C23 |
N7 |
H23A |
240.0 |
240.0 |
| N7 |
C23 |
C8 |
C9 |
334.9 |
90.0 |
| C13 |
C8 |
C9 |
C23 |
182.9 |
180.3 |
| C9 |
C8 |
C13 |
C12 |
356.8 |
0.1 |
| C9 |
C8 |
C13 |
H13 |
176.8 |
179.9 |
| C9 |
C8 |
C23 |
H23 |
214.9 |
330.0 |
| C9 |
C8 |
C23 |
H23A |
94.9 |
210.0 |
| C8 |
C9 |
C10 |
C11 |
354.9 |
360.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
180.1 |
| C8 |
C9 |
C10 |
H10 |
174.9 |
179.9 |
| N7 |
C23 |
C8 |
C13 |
152.3 |
269.8 |
| C9 |
C8 |
C13 |
C23 |
177.5 |
179.7 |
| C13 |
C8 |
C9 |
C10 |
3.7 |
0.0 |
| C13 |
C8 |
C9 |
H9 |
183.7 |
179.9 |
| C13 |
C8 |
C23 |
H23 |
32.3 |
149.7 |
| C13 |
C8 |
C23 |
H23A |
272.3 |
29.7 |
| C11 |
C12 |
C13 |
C8 |
3.9 |
359.9 |
| C8 |
C13 |
C12 |
H12 |
183.9 |
180.0 |
| C12 |
C13 |
C8 |
H13 |
180.0 |
180.1 |
| C8 |
C23 |
N7 |
HN7 |
40.5 |
0.0 |
| N7 |
C23 |
C8 |
H23 |
120.0 |
120.1 |
| N7 |
C23 |
C8 |
H23A |
240.0 |
240.0 |
| C9 |
C8 |
C23 |
C13 |
182.7 |
180.3 |
| C23 |
C8 |
C9 |
C10 |
180.9 |
179.7 |
| C23 |
C8 |
C9 |
H9 |
0.9 |
359.7 |
| C23 |
C8 |
C13 |
C12 |
179.3 |
180.4 |
| C23 |
C8 |
C13 |
H13 |
359.3 |
0.2 |
| H23 |
C23 |
C8 |
H23A |
120.0 |
120.0 |
| C10 |
C9 |
C8 |
C13 |
3.7 |
0.0 |
| C10 |
C9 |
C8 |
C23 |
180.9 |
179.7 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
179.9 |
| C9 |
C10 |
C11 |
C12 |
6.2 |
360.0 |
| C9 |
C10 |
C11 |
S14 |
179.6 |
180.0 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H9 |
174.9 |
180.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
S14 |
186.5 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
354.6 |
0.1 |
| C10 |
C11 |
C12 |
H12 |
174.6 |
179.9 |
| C10 |
C11 |
S14 |
O15 |
255.3 |
203.6 |
| C10 |
C11 |
S14 |
O16 |
25.8 |
336.4 |
| C10 |
C11 |
S14 |
N17 |
143.1 |
90.0 |
| C8 |
C13 |
C12 |
C11 |
3.9 |
359.9 |
| C10 |
C11 |
C12 |
S14 |
173.2 |
180.0 |
| C12 |
C11 |
C10 |
H10 |
186.1 |
180.0 |
| C12 |
C11 |
S14 |
O15 |
68.8 |
23.5 |
| C12 |
C11 |
S14 |
O16 |
199.3 |
156.4 |
| C12 |
C11 |
S14 |
N17 |
316.7 |
270.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.2 |
| C11 |
C12 |
C13 |
H13 |
183.9 |
180.0 |
| C10 |
C11 |
S14 |
C12 |
186.4 |
180.0 |
| S14 |
C11 |
C10 |
H10 |
359.6 |
360.0 |
| S14 |
C11 |
C12 |
C13 |
181.4 |
180.1 |
| S14 |
C11 |
C12 |
H12 |
1.4 |
360.0 |
| O15 |
S14 |
C11 |
O16 |
229.5 |
227.1 |
| O15 |
S14 |
C11 |
N17 |
112.2 |
113.5 |
| O16 |
S14 |
C11 |
N17 |
242.7 |
246.4 |
| C11 |
S14 |
N17 |
HN17 |
180.0 |
359.9 |
| C11 |
S14 |
N17 |
HN1A |
300.0 |
180.0 |
| C12 |
C13 |
C8 |
C23 |
179.3 |
180.4 |
| C8 |
C13 |
C12 |
H13 |
180.0 |
179.9 |
| C13 |
C12 |
C11 |
S14 |
181.4 |
180.1 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
179.8 |
| C11 |
S14 |
O15 |
O16 |
123.8 |
122.9 |
| C11 |
S14 |
O15 |
N17 |
250.2 |
245.9 |
| O16 |
S14 |
O15 |
N17 |
126.4 |
122.9 |
| O15 |
S14 |
N17 |
HN17 |
63.6 |
246.4 |
| O15 |
S14 |
N17 |
HN1A |
183.6 |
66.5 |
| C11 |
S14 |
O16 |
O15 |
233.8 |
237.1 |
| C11 |
S14 |
O16 |
N17 |
110.4 |
114.1 |
| O15 |
S14 |
O16 |
N17 |
236.6 |
237.1 |
| O16 |
S14 |
N17 |
HN17 |
293.2 |
113.5 |
| O16 |
S14 |
N17 |
HN1A |
53.2 |
293.6 |
| C11 |
S14 |
N17 |
O15 |
116.4 |
113.5 |
| C11 |
S14 |
N17 |
O16 |
246.8 |
246.4 |
| O15 |
S14 |
N17 |
O16 |
130.4 |
132.9 |
| HN17 |
N17 |
S14 |
HN1A |
240.0 |
179.9 |
| C5 |
N18 |
O19 |
O20 |
181.6 |
180.0 |
| C5 |
N18 |
O20 |
O19 |
178.4 |
180.0 |
| H22 |
C22 |
O21 |
H22A |
240.0 |
240.0 |
| H22 |
C22 |
O21 |
H22B |
120.0 |
120.0 |
| H22A |
C22 |
O21 |
H22B |
240.0 |
240.0 |
| H2 |
C2 |
N1 |
C6 |
178.0 |
180.0 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
181.0 |
180.0 |
| C4 |
N7 |
HN7 |
C23 |
229.5 |
180.1 |
| HN7 |
N7 |
C23 |
C8 |
40.5 |
0.0 |
| HN7 |
N7 |
C23 |
H23 |
160.5 |
120.1 |
| HN7 |
N7 |
C23 |
H23A |
280.5 |
240.1 |
| H9 |
C9 |
C8 |
C13 |
183.7 |
179.9 |
| H9 |
C9 |
C8 |
C23 |
0.9 |
359.7 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
180.1 |
| H9 |
C9 |
C10 |
C11 |
174.9 |
180.0 |
| H9 |
C9 |
C10 |
H10 |
354.9 |
360.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C9 |
H9 |
354.9 |
360.0 |
| H10 |
C10 |
C11 |
C12 |
186.1 |
180.0 |
| H10 |
C10 |
C11 |
S14 |
359.6 |
360.0 |
| H12 |
C12 |
C11 |
S14 |
1.4 |
360.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.2 |
| H12 |
C12 |
C13 |
H13 |
3.9 |
0.2 |
| H13 |
C13 |
C8 |
C23 |
359.3 |
0.2 |
| C8 |
C13 |
H13 |
C12 |
180.0 |
180.1 |
| H13 |
C13 |
C12 |
H12 |
3.9 |
0.2 |
| S14 |
N17 |
HN17 |
HN1A |
120.0 |
180.1 |
| S14 |
N17 |
HN1A |
HN17 |
240.0 |
179.9 |
| O21 |
C22 |
H22 |
H22A |
120.0 |
120.0 |
| O21 |
C22 |
H22 |
H22B |
240.0 |
240.0 |
| H22A |
C22 |
H22 |
H22B |
120.0 |
120.1 |
| O21 |
C22 |
H22A |
H22 |
240.0 |
240.0 |
| O21 |
C22 |
H22A |
H22B |
120.0 |
119.9 |
| H22 |
C22 |
H22A |
H22B |
240.0 |
239.9 |
| O21 |
C22 |
H22B |
H22 |
120.0 |
120.0 |
| O21 |
C22 |
H22B |
H22A |
240.0 |
240.0 |
| H22 |
C22 |
H22B |
H22A |
120.0 |
120.1 |
| N7 |
C23 |
H23 |
C8 |
237.5 |
240.0 |
| H23 |
C23 |
N7 |
HN7 |
160.5 |
120.1 |
| N7 |
C23 |
H23 |
H23A |
118.7 |
120.0 |
| C8 |
C23 |
H23 |
H23A |
241.3 |
240.1 |
| N7 |
C23 |
H23A |
C8 |
122.5 |
120.0 |
| H23A |
C23 |
N7 |
HN7 |
280.5 |
240.1 |
| N7 |
C23 |
H23A |
H23 |
241.3 |
240.0 |
| C8 |
C23 |
H23A |
H23 |
118.8 |
120.0 |