Atom Nomenclature for J60

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for J60

Atom Name (V3) Atom Name (V2)
CBA CBA
CAZ CAZ
NAX NAX
CAY CAY
CBB CBB
CAW CAW
CAV CAV
NAU NAU
CAS CAS
OAT OAT
CAN CAN
CAM CAM
CAQ CAQ
CAO CAO
CAR CAR
NAP NAP
CAL CAL
CAK CAK
CAG CAG
CAE CAE
CAD CAD
CAA CAA
CL CL
CAB CAB
CAC CAC
CAF CAF
NAH NAH
CAI CAI
OAJ OAJ
HBA1 1HBA
HBA2 2HBA
HBA3 3HBA
HAZ1 1HAZ
HAZ2 2HAZ
HAY1 1HAY
HAY2 2HAY
HAW1 1HAW
HAW2 2HAW
HBB1 1HBB
HBB2 2HBB
HBB3 3HBB
HAV1 1HAV
HAV2 2HAV
HAU HAU
HAQ1 1HAQ
HAQ2 2HAQ
HAQ3 3HAQ
HAR1 1HAR
HAR2 2HAR
HAR3 3HAR
HAP HAP
HAK HAK
HAD HAD
HAB HAB
HAC HAC
HAH HAH