PDB Chemical Component J4N

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J4N

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 C02 1.496 1.507
C02 C05 1.403 1.382
C02 C03 1.390 1.383
C05 C06 1.411 1.381
C03 C04 1.406 1.381
C06 C07 1.398 1.390
C04 C07 1.401 1.389
C07 S08 1.827 1.762
O31 C30 1.402 1.429
N29 N28 1.269 1.286
N29 N17 1.353 1.286
N28 C19 1.402 1.345
C09 S08 1.815 1.814
C09 C30 1.548 1.531
C09 O10 1.416 1.429
C16 C30 1.528 1.531
C16 N17 1.438 1.464
C16 C14 1.556 1.533
N17 C18 1.394 1.353
C11 O10 1.414 1.429
C11 C14 1.566 1.530
C11 C12 1.547 1.530
C19 C18 1.396 1.365
C19 C20 1.441 1.485
C14 O15 1.393 1.429
C21 C20 1.405 1.393
C21 C22 1.391 1.382
O13 C12 1.404 1.429
F23 C22 1.297 1.351
C20 C27 1.392 1.393
C22 C24 1.398 1.385
C27 C25 1.388 1.382
C24 C25 1.394 1.385
C25 F26 1.315 1.352
C21 H211 1.080 1.080
C24 H241 1.080 1.081
C01 H012 1.099 1.089
C01 H011 1.100 1.090
C01 H013 1.100 1.090
C03 H031 1.080 1.079
C04 H041 1.080 1.080
C05 H051 1.081 1.081
C06 H061 1.080 1.080
C09 H091 1.100 1.090
C11 H111 1.100 1.090
C12 H121 1.100 1.090
C12 H122 1.100 1.090
C14 H141 1.100 1.090
C16 H161 1.100 1.090
C18 H181 1.080 1.080
C27 H271 1.080 1.080
C30 H301 1.100 1.090
O13 H131 0.950 0.968
O15 H151 0.950 0.966
O31 H311 0.950 0.967

Bond Angles for J4N

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C01 C02 C05 121.0 119.9
C01 C02 C03 122.4 119.9
C02 C01 H012 109.5 109.5
C02 C01 H011 109.5 109.5
C02 C01 H013 109.5 109.5
C03 C02 C05 116.7 120.2
C02 C05 C06 122.2 120.1
C02 C05 H051 118.9 120.0
C02 C03 C04 121.3 120.1
C02 C03 H031 119.4 120.0
C05 C06 C07 120.9 119.9
C06 C05 H051 118.9 119.9
C05 C06 H061 119.6 120.1
C03 C04 C07 122.3 119.9
C04 C03 H031 119.3 120.0
C03 C04 H041 118.9 120.0
C04 C07 C06 116.6 119.9
C06 C07 S08 121.8 120.1
C07 C06 H061 119.6 120.1
C04 C07 S08 121.6 120.1
C07 C04 H041 118.9 120.0
C07 S08 C09 106.9 103.0
O31 C30 H301 114.0 109.5
C30 C09 S08 109.9 109.5
O10 C09 S08 108.8 109.5
S08 C09 H091 106.4 109.5
C30 C09 O10 111.0 109.4
C09 C30 C16 102.8 109.2
C30 C09 H091 109.3 109.5
C09 C30 H301 111.6 109.5
C09 O10 C11 110.7 114.1
O10 C09 H091 111.2 109.5
C30 C16 N17 112.2 109.6
C30 C16 H161 107.0 109.6
C16 C30 H301 111.9 109.6
C16 N17 C18 129.0 125.7
N17 C16 H161 108.0 109.5
C16 C14 O15 109.2 109.5
C16 C14 H141 109.4 109.6
N17 C18 H181 127.3 127.0
C14 C11 O10 107.8 109.4
C12 C11 O10 108.3 109.5
O10 C11 H111 111.4 109.5
C12 C11 C14 110.8 109.5
C11 C14 O15 110.0 109.5
C14 C11 H111 109.2 109.5
C11 C14 H141 109.3 109.5
C12 C11 H111 109.4 109.5
C11 C12 H121 109.7 109.4
C11 C12 H122 109.7 109.4
C19 C18 H181 127.3 127.0
C19 C20 C27 121.6 120.1
O15 C14 H141 111.8 109.5
C14 O15 H151 109.5 114.0
C21 C20 C27 117.2 119.8
C21 C22 C24 122.1 120.1
C22 C21 H211 119.6 120.0
O13 C12 H121 109.7 109.5
O13 C12 H122 109.7 109.5
C20 C27 C25 121.4 119.9
C20 C27 H271 119.3 120.0
C22 C24 C25 116.3 120.2
C22 C24 H241 121.9 119.9
C27 C25 F26 118.3 119.9
C24 C25 F26 119.5 119.9
C25 C24 H241 121.8 119.9
H012 C01 H011 109.4 109.5
H012 C01 H013 109.5 109.5
H011 C01 H013 109.5 109.4
H121 C12 H122 109.5 109.5

Torsion Angles for J4N

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 C02 C01 C05 178.8 180.3
C01 C02 C05 C06 179.4 180.0
C01 C02 C05 H051 359.4 0.1
C01 C02 C03 C04 180.7 179.9
C01 C02 C03 H031 0.7 359.9
H012 C01 C02 H011 240.0 240.0
H012 C01 C02 H013 120.0 120.0
H011 C01 C02 H013 240.0 240.0
C01 C02 C05 C03 178.9 180.3
C05 C02 C01 H012 90.6 90.0
C05 C02 C01 H011 210.6 210.0
C05 C02 C01 H013 330.6 329.9
C05 C02 C03 C04 359.6 0.3
C05 C02 C03 H031 179.6 180.2
C02 C05 C06 C07 359.6 0.0
C06 C05 C02 H051 180.0 180.0
C02 C05 C06 H061 179.6 180.0
C01 C02 C03 C05 181.2 179.7
C03 C02 C01 H012 269.4 270.3
C03 C02 C01 H011 29.4 30.3
C03 C02 C01 H013 149.4 150.3
C03 C02 C05 C06 0.5 359.7
C03 C02 C05 H051 180.5 179.7
C02 C03 C04 C07 0.3 0.0
C04 C03 C02 H031 180.0 180.0
C02 C03 C04 H041 180.3 180.0
C02 C05 C06 H051 180.0 180.0
C04 C07 C06 C05 0.2 0.3
C05 C06 C07 S08 179.1 180.0
C07 C06 C05 H061 180.0 180.1
C04 C03 C02 C05 359.6 0.3
C02 C03 C04 H031 180.0 180.0
C03 C04 C07 C06 359.9 359.7
C03 C04 C07 S08 181.0 180.0
C07 C04 C03 H041 180.0 180.1
C07 C06 C05 H051 179.6 180.0
C05 C06 C07 H061 180.0 179.9
C04 C07 C06 S08 181.1 180.3
C06 C07 C04 H041 179.8 179.8
C06 C07 S08 C09 195.1 0.3
C05 C06 C07 C04 0.2 0.3
C07 C04 C03 H031 180.3 180.1
C03 C04 C07 H041 180.0 179.9
C06 C07 C04 S08 178.9 179.7
C04 C07 C06 H061 180.2 180.3
C04 C07 S08 C09 13.9 180.0
C04 C07 S08 C06 178.8 179.7
S08 C07 C06 H061 359.0 0.0
S08 C07 C04 H041 1.0 0.1
C30 C09 S08 C07 153.2 175.0
O10 C09 S08 C07 275.0 294.9
C07 S08 C09 H091 34.9 54.9
O31 C30 C09 S08 296.2 297.5
O31 C30 C09 H091 52.6 57.6
C09 C30 O31 H301 125.4 120.1
O31 C30 C16 H161 305.1 303.0
C16 C30 O31 H301 235.8 239.8
N29 N17 C16 H161 1.0 335.2
N29 N17 C18 H181 179.5 180.0
N28 C19 C18 H181 180.7 180.0
C30 C09 S08 O10 238.2 240.1
S08 C09 C30 C16 183.1 177.6
C30 C09 S08 H091 118.3 120.1
S08 C09 C30 H301 63.0 57.6
S08 C09 O10 C11 167.8 178.9
O10 C09 S08 H091 240.1 240.0
C07 S08 C09 C30 153.2 175.0
O31 C30 C09 H301 233.2 239.9
O10 C09 C30 S08 239.5 240.0
S08 C09 C30 H091 243.5 240.0
C30 C09 O10 C11 288.9 298.9
O10 C09 C30 H091 123.1 120.0
C09 C30 C16 N17 177.9 183.1
C09 C30 C16 H161 59.6 62.9
C16 C30 C09 H301 120.2 120.0
C07 S08 C09 O10 275.0 294.9
C30 C09 O10 S08 121.1 120.0
S08 C09 O10 H091 116.9 120.0
O10 C09 C30 C16 62.6 57.6
C30 C09 O10 H091 238.0 240.0
O10 C09 C30 H301 302.5 297.7
C14 C11 O10 C09 65.8 61.2
C12 C11 O10 C09 185.7 181.2
C09 O10 C11 H111 306.1 301.2
O31 C30 C16 H301 125.5 120.2
C16 C30 C09 S08 183.1 177.6
C16 C30 C09 O10 62.6 57.6
C16 C30 C09 H091 299.6 297.7
C09 C30 C16 H301 240.0 240.1
C30 C16 N17 C18 62.8 35.0
N17 C16 C30 H161 118.3 120.2
C30 C16 C14 O15 297.8 297.1
C30 C16 C14 H141 175.2 176.9
C30 C16 N17 H161 242.3 239.8
N17 C16 C30 H301 297.8 303.1
N17 C16 C14 O15 63.9 56.9
N17 C16 C14 H141 301.3 296.8
C16 N17 C18 H181 360.0 360.0
C09 C30 C16 C14 302.8 303.0
C16 C14 C11 O10 302.8 302.4
C11 C14 C16 O15 119.1 119.9
C16 C14 C11 H111 63.9 62.4
C11 C14 C16 H141 241.7 240.1
O15 C14 C16 H141 122.6 120.2
C16 C14 O15 H151 180.0 179.7
C18 N17 C16 H161 180.5 155.2
C19 C18 N17 H181 180.0 179.7
C11 O10 C09 S08 167.8 178.9
C11 O10 C09 H091 50.9 58.8
C12 C11 O10 C14 119.9 120.0
O10 C11 C14 O15 61.4 62.3
C14 C11 O10 H111 119.7 120.0
O10 C11 C14 H141 184.5 182.4
C12 C11 O10 H111 239.6 240.0
O10 C11 C12 H121 186.5 185.0
O10 C11 C12 H122 306.8 305.0
C09 O10 C11 C14 65.8 61.2
C16 C14 C11 O15 241.4 240.1
C16 C14 C11 H141 118.4 119.9
C12 C11 C14 O10 241.7 240.0
O10 C11 C14 H111 238.9 240.0
C12 C11 C14 H111 120.6 120.0
C14 C11 C12 H121 304.5 305.0
C14 C11 C12 H122 64.8 65.0
O15 C14 C11 H141 236.9 239.8
C11 C14 O15 H151 62.7 60.0
C09 O10 C11 C12 185.7 181.2
C14 C11 C12 O10 118.0 120.0
O10 C11 C12 H111 121.6 120.0
C12 C11 C14 O15 303.1 302.3
C14 C11 C12 H111 239.6 240.0
C12 C11 C14 H141 66.2 62.5
O13 C12 C11 H121 240.2 240.0
O13 C12 C11 H122 119.9 120.0
H121 C12 C11 H122 239.7 240.0
C16 N17 C18 C19 179.9 179.7
N17 C18 C19 H181 180.0 180.3
C18 C19 C20 C27 18.2 180.1
C21 C20 C19 C27 177.0 179.7
C19 C20 C27 C25 178.5 179.7
C19 C20 C27 H271 358.5 359.6
C16 C14 O15 H141 238.9 239.8
O15 C14 C11 O10 61.4 62.3
O15 C14 C11 H111 182.5 182.3
C11 C14 O15 H141 121.6 120.1
C19 C20 C21 C27 182.9 180.3
C21 C20 C27 C25 1.4 0.1
C21 C20 C27 H271 181.4 179.9
C22 C21 C20 C27 357.9 359.9
C21 C22 C24 C25 359.8 359.9
C21 C22 C24 H241 179.7 180.0
O13 C12 C11 H111 305.0 305.0
C11 C12 O13 H121 119.9 120.0
C11 C12 O13 H122 240.2 240.0
H121 C12 O13 H122 120.3 120.1
F23 C22 C21 H211 0.7 359.9
F23 C22 C24 H241 0.6 0.1
C20 C27 C25 F26 180.0 180.0
C24 C22 C21 H211 181.6 180.0
C22 C24 C25 F26 179.3 180.0
C25 C24 C22 H241 180.0 179.9
C20 C27 C25 H271 180.0 179.9
C24 C25 C27 F26 179.9 180.0
C27 C25 C24 H241 179.5 180.0
C20 C27 C25 C24 359.9 360.0
C22 C24 C25 H241 180.0 180.1
C27 C25 C24 F26 180.1 180.0
F26 C25 C24 H241 359.4 360.0
H211 C21 C20 C27 177.9 180.0
H211 C21 C22 C24 181.6 180.0
C22 C24 H241 C25 180.0 179.9
H241 C24 C25 F26 359.4 360.0
H012 C01 C02 C05 90.6 90.0
H012 C01 C02 C03 269.4 270.3
C02 C01 H012 H011 120.0 120.0
C02 C01 H012 H013 240.0 240.0
H011 C01 H012 H013 120.0 120.0
H011 C01 C02 C05 210.6 210.0
H011 C01 C02 C03 29.4 30.3
C02 C01 H011 H012 240.0 240.0
C02 C01 H011 H013 120.0 120.0
H012 C01 H011 H013 240.0 240.0
H013 C01 C02 C05 330.6 329.9
H013 C01 C02 C03 149.4 150.3
C02 C01 H013 H012 120.0 120.0
C02 C01 H013 H011 240.0 240.0
H012 C01 H013 H011 120.0 120.0
H031 C03 C02 C05 179.6 180.2
C02 C03 H031 C04 180.0 180.0
H031 C03 C04 C07 180.3 180.1
H031 C03 C04 H041 0.3 360.0
C03 C04 H041 C07 180.0 180.1
H041 C04 C03 H031 0.3 360.0
H041 C04 C07 C06 179.8 179.8
H041 C04 C07 S08 1.0 0.1
C02 C05 H051 C06 180.0 180.0
H051 C05 C06 C07 179.6 180.0
H051 C05 C06 H061 359.6 359.9
C05 C06 H061 C07 180.0 180.1
H061 C06 C05 H051 359.6 359.9
H061 C06 C07 S08 359.0 0.0
C30 C09 H091 S08 241.3 239.9
O10 C09 H091 S08 118.4 120.0
C30 C09 H091 O10 122.9 119.9
H091 C09 C30 C16 299.6 297.7
H091 C09 C30 H301 179.4 177.7
H091 C09 O10 C11 50.9 58.8
C14 C11 H111 O10 241.1 240.0
C12 C11 H111 O10 119.7 120.0
C12 C11 H111 C14 238.6 240.0
H111 C11 C14 O15 182.5 182.3
H111 C11 C14 H141 305.6 302.4
H111 C11 C12 H121 64.9 65.0
H111 C11 C12 H122 185.2 185.0
H121 C12 C11 O10 186.5 185.0
H121 C12 C11 C14 304.5 305.0
H121 C12 C11 H111 64.9 65.0
C11 C12 H121 H122 120.4 120.0
O13 C12 H121 H122 239.5 240.0
H122 C12 C11 O10 306.8 305.0
H122 C12 C11 C14 64.8 65.0
H122 C12 C11 H111 185.2 185.0
C11 C12 H122 H121 239.5 240.0
O13 C12 H122 H121 120.4 120.1
C16 C14 H141 O15 121.0 120.1
H141 C14 C11 O10 184.5 182.4
C11 C14 H141 O15 238.0 239.8
H141 C14 C11 H111 305.6 302.4
H141 C14 O15 H151 301.1 299.9
C30 C16 H161 N17 121.0 120.2
H161 C16 C30 H301 179.6 182.9
H161 C16 N17 C18 180.5 155.2
H161 C16 C14 O15 180.8 177.1
H161 C16 C14 H141 58.2 57.0
C20 C27 H271 C25 180.0 180.1
H271 C27 C25 F26 0.0 0.1
H301 C30 C09 S08 63.0 57.6
H301 C30 C09 O10 302.5 297.7
C09 C30 H301 C16 114.6 119.7
H301 C30 C09 H091 179.4 177.7
H301 C30 C16 N17 297.8 303.1
H301 C30 C16 H161 179.6 182.9
H131 O13 C12 H121 60.1 60.0
H131 O13 C12 H122 299.8 299.9
H151 O15 C14 H141 301.1 299.9
H311 O31 C30 H301 54.6 299.9