PDB Chemical Component J3Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J3Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C8	C9	1.534	1.554
C8	C7	1.509	1.525
O1	C7	1.232	1.208
C9	C10	1.523	1.533
C7	C5	1.507	1.499
C6	C5	1.525	1.530
C5	C10	1.508	1.555
C5	C4	1.519	1.513
C10	C12	1.521	1.515
C14	C12	1.520	1.529
C14	C15	1.529	1.528
C12	C2	1.519	1.534
C4	C3	1.533	1.540
C15	C16	1.518	1.507
C2	C3	1.541	1.522
C2	C21	1.490	1.501
C16	C21	1.390	1.379
C16	C17	1.407	1.389
C21	C20	1.399	1.389
C17	C18	1.392	1.384
C20	C19	1.391	1.378
C18	C19	1.396	1.388
C18	O3	1.375	1.359
C2	H2	1.100	1.090
C4	H14	1.100	1.090
C4	H24	1.100	1.091
C6	H16	1.100	1.090
C6	H26	1.100	1.089
C6	H36	1.100	1.090
O3	HO3	0.950	0.967
C8	H18	1.101	1.090
C8	H28	1.100	1.090
C9	H19	1.100	1.090
C9	H29	1.100	1.091
C10	H10	1.100	1.091
C12	H12	1.100	1.090
C3	H13	1.100	1.090
C3	H23	1.100	1.090
C14	H114	1.100	1.090
C14	H214	1.100	1.090
C15	H115	1.100	1.090
C15	H215	1.100	1.090
C17	H17	1.080	1.080
C19	H19A	1.080	1.079
C20	H20	1.080	1.079

Bond Angles for J3Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C8	C9	C10	105.2	102.6
C9	C8	H18	111.7	110.0
C9	C8	H28	113.0	110.0
C8	C9	H19	110.9	110.8
C8	C9	H29	111.8	110.8
C5	C10	C9	105.9	101.0
C9	C10	C12	118.7	115.9
C10	C9	H19	110.9	110.9
C10	C9	H29	111.9	110.8
C9	C10	H10	105.9	110.9
C7	C5	C10	99.5	103.6
C6	C5	C10	111.7	109.3
C5	C10	C12	110.0	106.3
C5	C10	H10	115.3	111.0
C5	C4	C3	109.4	107.7
C5	C4	H14	109.5	109.8
C5	C4	H24	109.5	109.9
C12	C10	H10	101.4	111.2
C10	C12	H12	112.5	109.7
C14	C12	H12	104.7	110.5
C14	C15	C16	115.0	111.2
C15	C14	H114	107.6	109.8
C15	C14	H214	106.3	109.7
C14	C15	H115	107.7	109.1
C14	C15	H215	106.4	109.1
C12	C2	C3	110.8	111.4
C12	C2	C21	112.0	110.1
C12	C2	H2	107.9	107.3
C2	C3	C4	114.3	110.6
C3	C4	H14	109.5	109.8
C3	C4	H24	109.5	109.8
C4	C3	H13	107.9	109.3
C4	C3	H23	106.7	109.2
C15	C16	C21	122.4	122.9
C15	C16	C17	117.8	117.6
C16	C15	H115	107.7	109.1
C16	C15	H215	106.4	109.1
C3	C2	C21	112.6	111.9
C3	C2	H2	107.3	108.0
C2	C3	H13	107.9	109.3
C2	C3	H23	106.8	109.3
C2	C21	C16	121.0	121.9
C2	C21	C20	119.4	118.2
C21	C2	H2	106.0	108.0
C21	C16	C17	119.8	119.5
C16	C21	C20	119.6	119.9
C16	C17	C18	120.4	120.6
C16	C17	H17	119.8	119.7
C21	C20	C19	120.4	120.6
C21	C20	H20	119.8	119.7
C17	C18	C19	119.4	119.8
C18	C17	H17	119.8	119.7
C20	C19	H19A	119.9	120.2
C18	C19	H19A	119.9	120.2
C18	O3	HO3	109.5	114.0
H14	C4	H24	109.4	109.7
H16	C6	H26	109.5	109.5
H16	C6	H36	109.4	109.5
H26	C6	H36	109.4	109.5
H18	C8	H28	104.6	110.1
H19	C9	H29	106.2	110.8
H13	C3	H23	113.4	109.2
H114	C14	H214	114.0	109.7
H115	C15	H215	113.9	109.1

Torsion Angles for J3Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C10	C9	C8	325.9	319.2
C8	C9	C10	C12	201.7	204.8
C10	C9	C8	H19	240.0	241.7
C10	C9	C8	H29	121.6	118.3
C8	C9	C10	H10	88.7	76.9
H18	C8	C9	H28	242.4	121.5
H19	C9	C8	H29	241.6	236.6
C8	C7	C5	C10	329.7	330.3
O1	C7	C5	C10	154.1	150.3
C10	C9	C8	H18	134.2	264.2
C10	C9	C8	H28	251.9	142.8
C8	C9	C10	H19	120.0	118.3
C8	C9	C10	H29	238.4	241.7
C7	C5	C10	C9	38.5	44.3
C6	C5	C10	C9	282.4	288.4
C5	C10	C9	C12	124.2	114.4
C5	C10	C9	H10	237.1	242.3
C12	C10	C9	H10	112.9	127.9
C9	C10	C12	H12	70.6	57.4
H19	C9	C10	H29	118.4	123.4
C6	C5	C7	C10	117.3	116.2
C7	C5	C10	C12	167.9	165.6
C7	C5	C10	H10	281.7	286.7
C7	C5	C4	C3	166.1	180.2
C7	C5	C4	H14	286.1	299.8
C7	C5	C4	H24	46.1	60.6
C7	C5	C6	C10	250.5	247.5
C6	C5	C10	C12	51.8	49.7
C6	C5	C10	H10	165.7	170.7
C6	C5	C4	C3	293.3	304.7
C6	C5	C4	H14	53.3	64.3
C6	C5	C4	H24	173.3	185.1
C8	C9	C10	C5	325.9	319.2
C9	C10	C5	C12	230.6	238.7
C5	C10	C9	H19	205.8	200.9
C5	C10	C9	H29	87.5	77.5
C9	C10	C5	H10	116.7	117.6
C10	C5	C4	C3	55.8	63.6
C10	C5	C4	H14	175.7	183.2
C10	C5	C4	H24	295.7	304.0
C12	C10	C5	H10	246.1	239.0
C5	C10	C12	H12	308.5	306.1
C2	C3	C4	C5	311.0	303.1
C3	C4	C5	H14	240.0	240.4
C3	C4	C5	H24	120.0	119.6
C5	C4	C3	H13	71.0	182.7
C5	C4	C3	H23	193.2	63.4
H14	C4	C5	H24	240.0	239.2
C5	C10	C12	C9	237.9	248.7
C12	C10	C9	H19	81.7	86.6
C12	C10	C9	H29	323.3	323.1
C9	C10	C12	H10	244.6	232.2
C5	C10	C12	H10	122.5	120.9
C14	C12	C10	H12	242.4	237.0
C10	C12	C2	C3	300.6	299.8
C10	C12	C2	C21	174.0	175.1
C10	C12	C2	H2	57.8	57.9
C14	C12	C10	H10	68.4	62.2
C10	C12	C14	H12	122.1	122.6
C14	C12	C2	C21	53.5	54.6
C14	C12	C2	H2	297.3	297.4
C15	C14	C12	H12	72.2	49.7
C14	C15	C16	C21	3.5	345.1
C14	C15	C16	C17	184.2	165.2
C16	C15	C14	H115	240.0	239.6
C16	C15	C14	H215	117.5	120.4
H114	C14	C15	H214	122.6	120.7
H115	C15	C14	H215	237.5	240.9
C12	C2	C3	C4	52.4	55.9
C3	C2	C12	C21	126.6	124.7
C3	C2	C12	H2	242.8	242.0
C12	C2	C3	H13	292.4	176.3
C12	C2	C3	H23	170.2	295.7
C12	C2	C21	C16	330.2	339.1
C12	C2	C21	C20	151.0	159.4
C21	C2	C12	H2	116.2	117.2
C5	C4	C3	H14	120.0	119.6
C5	C4	C3	H24	240.0	240.3
C4	C3	C2	C21	178.6	179.7
C4	C3	C2	H2	294.8	298.3
C2	C3	C4	H13	240.0	120.4
C2	C3	C4	H23	117.8	239.7
H14	C4	C3	H24	120.0	120.7
H13	C3	C4	H23	237.8	119.3
C16	C15	C14	H114	261.8	288.9
C16	C15	C14	H214	139.2	168.3
C14	C15	C16	H115	120.0	120.4
C14	C15	C16	H215	242.5	239.5
C2	C21	C16	C15	0.9	0.7
C21	C16	C15	C17	179.3	179.9
C15	C16	C21	C20	180.0	180.5
C15	C16	C17	C18	180.2	179.6
C15	C16	C17	H17	0.2	359.6
H115	C15	C16	H215	122.5	119.1
C5	C4	C3	C2	311.0	303.1
C12	C2	C3	C21	233.7	236.3
C12	C2	C3	H2	117.5	117.6
C2	C3	C4	H14	191.0	183.5
C2	C3	C4	H24	71.0	62.7
C4	C3	C2	H13	120.0	239.6
C4	C3	C2	H23	242.2	120.3
C3	C2	C21	C16	204.5	214.7
C3	C2	C21	C20	25.4	34.9
C21	C2	C3	H2	243.8	241.3
H13	C3	C2	H23	122.2	240.6
C12	C2	C21	C3	125.6	124.5
C12	C2	C21	H2	242.6	243.2
C21	C2	C3	C4	178.6	179.7
C15	C16	C21	C2	0.9	0.7
C3	C2	C21	H2	117.0	118.7
C21	C2	C3	H13	58.7	300.0
C21	C2	C3	H23	296.5	59.4
C2	C21	C16	C17	180.2	180.6
C16	C21	C2	C20	179.1	179.8
C2	C21	C20	C19	179.6	179.6
C2	C21	C20	H20	359.6	359.5
C15	C16	C21	C17	180.7	180.1
C21	C16	C15	H115	243.5	224.7
C21	C16	C15	H215	121.0	105.5
C2	C21	C16	C20	180.9	180.2
C16	C21	C2	H2	87.5	96.0
C21	C16	C17	C18	0.8	359.8
C21	C16	C17	H17	180.8	179.7
C16	C21	C20	C19	0.4	359.8
C16	C21	C20	H20	180.4	179.7
C15	C16	C17	C21	179.3	179.9
C17	C16	C15	H115	64.2	44.8
C17	C16	C15	H215	301.7	285.7
C17	C16	C21	C20	359.3	0.3
C16	C17	C18	C19	359.2	360.0
C18	C17	C16	H17	180.0	180.0
C2	C21	C20	C16	179.1	179.8
C20	C21	C2	H2	268.4	276.2
C20	C21	C16	C17	359.3	0.3
C21	C20	C19	H19A	179.7	179.9
C16	C17	C18	H17	180.0	180.0
C17	C18	C19	H19A	180.5	180.2
C17	C18	O3	HO3	8.1	90.0
C21	C20	C19	H20	180.0	179.9
C18	C19	C20	H19A	180.0	180.0
C21	C20	C19	C18	359.7	359.9
C19	C18	C17	H17	179.3	180.0
C20	C19	C18	H19A	180.0	180.0
C19	C18	O3	HO3	188.5	270.0
C12	C2	H2	C3	240.6	239.8
C12	C2	H2	C21	120.1	118.6
H2	C2	C3	C4	294.8	298.3
C3	C2	H2	C21	239.5	238.9
H2	C2	C3	H13	174.9	58.7
H2	C2	C3	H23	52.6	178.1
H2	C2	C21	C16	87.5	96.0
H2	C2	C21	C20	268.4	276.2
C5	C4	H14	C3	240.0	241.7
C5	C4	H14	H24	120.0	120.9
C3	C4	H14	H24	240.0	239.2
H14	C4	C3	H13	311.0	63.1
H14	C4	C3	H23	73.2	303.8
C5	C4	H24	C3	119.9	118.3
C5	C4	H24	H14	240.0	239.1
C3	C4	H24	H14	120.0	120.8
H24	C4	C3	H13	191.0	302.4
H24	C4	C3	H23	313.2	183.0
H16	C6	C5	C10	269.7	54.6
H26	C6	H16	H36	120.0	120.0
H26	C6	C5	C10	29.7	174.6
H16	C6	H26	H36	240.0	240.0
H36	C6	C5	C10	149.7	294.7
H16	C6	H36	H26	120.0	120.0
H18	C8	C9	C10	134.2	264.2
C9	C8	H18	H28	122.6	238.6
H18	C8	C9	H19	254.3	22.6
H18	C8	C9	H29	12.6	145.9
H28	C8	C9	C10	251.9	142.8
C9	C8	H28	H18	238.3	121.4
H28	C8	C9	H19	11.9	261.1
H28	C8	C9	H29	130.2	24.5
C8	C9	H19	C10	243.5	246.8
H19	C9	C8	H18	254.3	22.6
H19	C9	C8	H28	11.9	261.1
C8	C9	H19	H29	121.7	123.4
H19	C9	C10	C12	81.7	86.6
C10	C9	H19	H29	238.2	236.6
H19	C9	C10	H10	328.7	318.6
C8	C9	H29	C10	117.7	113.2
H29	C9	C8	H18	12.6	145.9
H29	C9	C8	H28	130.2	24.5
C8	C9	H29	H19	238.8	236.6
H29	C9	C10	C12	323.3	323.1
C10	C9	H29	H19	121.2	123.5
H29	C9	C10	H10	210.3	195.2
C5	C10	H10	C9	116.7	111.5
C9	C10	H10	C12	124.5	130.4
H10	C10	C9	H19	328.7	318.6
H10	C10	C9	H29	210.3	195.2
C5	C10	H10	C12	241.2	241.9
H10	C10	C12	H12	186.0	185.2
H12	C12	C10	H10	186.0	185.2
H12	C12	C2	C3	62.5	58.9
H12	C12	C2	C21	295.9	294.1
H12	C12	C2	H2	179.7	176.9
C2	C3	H13	C4	124.0	238.8
H13	C3	C4	H14	311.0	63.1
H13	C3	C4	H24	191.0	302.4
C4	C3	H13	H23	118.0	240.6
H13	C3	C2	C21	58.7	300.0
H13	C3	C2	H2	174.9	58.7
C2	C3	H13	H23	242.0	119.4
C2	C3	H23	C4	237.3	121.1
H23	C3	C4	H14	73.2	303.8
H23	C3	C4	H24	313.2	183.0
C4	C3	H23	H13	241.4	119.4
H23	C3	C2	C21	296.5	59.4
H23	C3	C2	H2	52.6	178.1
C2	C3	H23	H13	118.7	240.6
H114	C14	C12	H12	192.2	169.4
H114	C14	C15	C16	261.8	288.9
C15	C14	H114	H214	242.3	239.4
H114	C14	C15	H115	21.8	49.4
H114	C14	C15	H215	144.3	168.5
H214	C14	C12	H12	314.8	290.1
H214	C14	C15	C16	139.2	168.3
C15	C14	H214	H114	118.4	120.7
H214	C14	C15	H115	259.2	288.7
H214	C14	C15	H215	21.7	47.8
C14	C15	H115	C16	235.5	238.3
H115	C15	C14	H114	21.8	49.4
H115	C15	C14	H214	259.2	288.7
C14	C15	H115	H215	117.7	119.1
H115	C15	C16	C21	243.5	224.7
H115	C15	C16	C17	64.2	44.8
C16	C15	H115	H215	242.3	240.9
C14	C15	H215	C16	123.1	121.7
H215	C15	C14	H114	144.3	168.5
H215	C15	C14	H214	21.7	47.8
C14	C15	H215	H115	241.5	240.9
H215	C15	C16	C21	121.0	105.5
H215	C15	C16	C17	301.7	285.7
C16	C15	H215	H115	118.4	119.1
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	C19	179.3	180.0
C21	C20	H20	C19	180.0	180.1
H20	C20	C19	H19A	359.6	360.0