PDB Chemical Component J2I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for J2I
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.423 |
1.395 |
| C1 |
C6 |
1.384 |
1.360 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
C11 |
1.381 |
1.383 |
| C2 |
H2 |
1.080 |
1.080 |
| C9 |
C3 |
1.402 |
1.384 |
| C3 |
C8 |
1.398 |
1.387 |
| C3 |
H3 |
1.080 |
1.080 |
| C10 |
C4 |
1.396 |
1.385 |
| C8 |
C4 |
1.394 |
1.387 |
| C4 |
H4 |
1.080 |
1.080 |
| C13 |
C5 |
1.416 |
1.362 |
| C12 |
C5 |
1.377 |
1.398 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
N28 |
1.368 |
1.345 |
| C6 |
H6 |
1.080 |
1.081 |
| C23 |
C7 |
1.512 |
1.508 |
| C9 |
C7 |
1.405 |
1.385 |
| C7 |
C10 |
1.401 |
1.384 |
| C8 |
O33 |
1.369 |
1.359 |
| F34 |
C9 |
1.335 |
1.351 |
| C10 |
F35 |
1.337 |
1.351 |
| C11 |
C14 |
1.447 |
1.414 |
| C11 |
N28 |
1.385 |
1.379 |
| N27 |
C12 |
1.357 |
1.308 |
| C12 |
C21 |
1.482 |
1.508 |
| N24 |
C13 |
1.326 |
1.359 |
| N31 |
C13 |
1.401 |
1.393 |
| N31 |
C14 |
1.372 |
1.381 |
| C14 |
N25 |
1.321 |
1.322 |
| N25 |
C15 |
1.406 |
1.336 |
| N26 |
C15 |
1.330 |
1.312 |
| C15 |
N29 |
1.360 |
1.388 |
| N30 |
C16 |
1.376 |
1.347 |
| C16 |
C23 |
1.504 |
1.507 |
| C16 |
O32 |
1.227 |
1.213 |
| N29 |
C17 |
1.469 |
1.469 |
| C19 |
C17 |
1.526 |
1.534 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| C20 |
C18 |
1.526 |
1.541 |
| N29 |
C18 |
1.462 |
1.469 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C19 |
N30 |
1.478 |
1.470 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.101 |
1.090 |
| C20 |
N30 |
1.484 |
1.469 |
| C20 |
H20 |
1.100 |
1.089 |
| C20 |
H20A |
1.100 |
1.090 |
| C21 |
H21 |
1.100 |
1.090 |
| C21 |
H21A |
1.100 |
1.090 |
| C21 |
H21B |
1.100 |
1.090 |
| O33 |
C22 |
1.421 |
1.428 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.099 |
1.090 |
| C22 |
H22B |
1.100 |
1.090 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.090 |
| N24 |
N27 |
1.338 |
1.401 |
| N28 |
N26 |
1.370 |
1.402 |
| N31 |
HN31 |
1.000 |
0.970 |
| N24 |
HN24 |
1.000 |
0.969 |
Bond Angles for J2I
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
108.3 |
107.9 |
| C2 |
C1 |
H1 |
125.9 |
126.1 |
| C6 |
C1 |
H1 |
125.8 |
126.0 |
| C1 |
C6 |
N28 |
107.5 |
109.1 |
| C1 |
C6 |
H6 |
126.3 |
125.5 |
| C11 |
C2 |
H2 |
126.8 |
126.6 |
| C2 |
C11 |
C14 |
133.1 |
133.7 |
| C2 |
C11 |
N28 |
108.3 |
107.6 |
| C9 |
C3 |
H3 |
120.0 |
120.0 |
| C8 |
C3 |
H3 |
119.9 |
120.1 |
| C3 |
C8 |
C4 |
118.9 |
120.0 |
| C3 |
C8 |
O33 |
122.6 |
120.0 |
| C10 |
C4 |
H4 |
119.5 |
120.0 |
| C8 |
C4 |
H4 |
119.4 |
120.1 |
| C13 |
C5 |
H5 |
127.6 |
126.1 |
| C12 |
C5 |
H5 |
127.6 |
126.1 |
| N28 |
C6 |
H6 |
126.3 |
125.4 |
| C6 |
N28 |
C11 |
109.5 |
108.6 |
| C6 |
N28 |
N26 |
126.7 |
133.0 |
| C9 |
C7 |
C10 |
118.3 |
120.1 |
| C7 |
C10 |
F35 |
121.3 |
120.0 |
| C8 |
O33 |
C22 |
120.1 |
117.0 |
| C14 |
C11 |
N28 |
118.4 |
118.7 |
| C11 |
C14 |
N25 |
116.8 |
119.3 |
| C11 |
N28 |
N26 |
123.6 |
118.4 |
| C12 |
C21 |
H21 |
109.5 |
109.5 |
| C12 |
C21 |
H21A |
109.5 |
109.4 |
| C12 |
C21 |
H21B |
109.4 |
109.4 |
| C14 |
N25 |
C15 |
121.8 |
121.6 |
| N25 |
C15 |
N29 |
117.5 |
119.0 |
| N26 |
C15 |
N29 |
119.0 |
119.0 |
| C15 |
N29 |
C17 |
122.4 |
120.6 |
| C15 |
N29 |
C18 |
122.2 |
120.6 |
| N30 |
C16 |
O32 |
122.1 |
120.0 |
| C23 |
C16 |
O32 |
120.7 |
120.0 |
| C16 |
C23 |
H23 |
107.9 |
109.5 |
| C16 |
C23 |
H23A |
107.9 |
109.5 |
| N29 |
C17 |
H17 |
109.5 |
109.7 |
| N29 |
C17 |
H17A |
109.5 |
109.6 |
| C19 |
C17 |
H17 |
109.5 |
109.6 |
| C19 |
C17 |
H17A |
109.5 |
109.5 |
| H17 |
C17 |
H17A |
109.4 |
109.6 |
| C20 |
C18 |
H18 |
110.0 |
109.6 |
| C20 |
C18 |
H18A |
110.0 |
109.6 |
| N29 |
C18 |
H18 |
110.0 |
109.8 |
| N29 |
C18 |
H18A |
110.0 |
109.7 |
| H18 |
C18 |
H18A |
109.0 |
109.6 |
| N30 |
C19 |
H19 |
109.7 |
109.6 |
| N30 |
C19 |
H19A |
109.7 |
109.6 |
| C19 |
N30 |
C20 |
117.7 |
118.8 |
| H19 |
C19 |
H19A |
109.3 |
109.8 |
| N30 |
C20 |
H20 |
108.7 |
109.6 |
| N30 |
C20 |
H20A |
108.7 |
109.6 |
| H20 |
C20 |
H20A |
110.2 |
109.8 |
| H21 |
C21 |
H21A |
109.4 |
109.5 |
| H21 |
C21 |
H21B |
109.5 |
109.5 |
| H21A |
C21 |
H21B |
109.5 |
109.5 |
| O33 |
C22 |
H22 |
109.5 |
109.5 |
| O33 |
C22 |
H22A |
109.5 |
109.5 |
| O33 |
C22 |
H22B |
109.4 |
109.5 |
| H22 |
C22 |
H22A |
109.5 |
109.4 |
| H22 |
C22 |
H22B |
109.5 |
109.4 |
| H22A |
C22 |
H22B |
109.5 |
109.4 |
| H23 |
C23 |
H23A |
111.0 |
109.5 |
| N27 |
N24 |
HN24 |
128.0 |
126.1 |
Torsion Angles for J2I
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C2 |
C1 |
C6 |
N28 |
358.0 |
359.7 |
| C2 |
C1 |
C6 |
H6 |
178.0 |
179.7 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| N28 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C1 |
C6 |
N28 |
C11 |
1.3 |
0.5 |
| C1 |
C6 |
N28 |
N26 |
186.2 |
180.0 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.3 |
| H1 |
C1 |
C6 |
N28 |
178.0 |
180.0 |
| H1 |
C1 |
C6 |
H6 |
358.0 |
360.0 |
| C11 |
C2 |
C1 |
C6 |
1.9 |
360.0 |
| C11 |
C2 |
C1 |
H1 |
181.9 |
179.7 |
| C6 |
N28 |
C11 |
C2 |
359.9 |
359.5 |
| C14 |
C11 |
C2 |
N28 |
174.5 |
179.7 |
| C2 |
C11 |
C14 |
N25 |
183.9 |
180.0 |
| C2 |
C11 |
N28 |
N26 |
175.2 |
179.9 |
| H2 |
C2 |
C1 |
C6 |
181.9 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
1.9 |
359.8 |
| H2 |
C2 |
C11 |
C14 |
353.4 |
360.0 |
| H2 |
C2 |
C11 |
N28 |
178.9 |
180.3 |
| C8 |
C3 |
C9 |
H3 |
180.0 |
179.7 |
| C9 |
C3 |
C8 |
O33 |
179.9 |
180.2 |
| C9 |
C3 |
C8 |
H3 |
180.0 |
180.3 |
| C3 |
C8 |
C4 |
H4 |
180.6 |
179.9 |
| C3 |
C8 |
O33 |
C22 |
323.2 |
180.0 |
| H3 |
C3 |
C8 |
C4 |
177.9 |
180.0 |
| H3 |
C3 |
C8 |
O33 |
359.9 |
359.9 |
| C8 |
C4 |
C10 |
H4 |
180.0 |
180.0 |
| C4 |
C8 |
C3 |
H3 |
177.9 |
180.0 |
| C3 |
C8 |
C4 |
O33 |
181.9 |
179.9 |
| C10 |
C4 |
C8 |
H4 |
180.0 |
180.0 |
| C12 |
C5 |
C13 |
H5 |
180.0 |
179.8 |
| C13 |
C5 |
C12 |
H5 |
180.0 |
180.2 |
| N28 |
C6 |
C1 |
H1 |
178.0 |
180.0 |
| C1 |
C6 |
N28 |
H6 |
180.0 |
180.0 |
| C2 |
C11 |
N28 |
C6 |
359.9 |
359.5 |
| C14 |
C11 |
N28 |
C6 |
184.4 |
179.8 |
| C11 |
N28 |
C6 |
N26 |
175.2 |
180.5 |
| H6 |
C6 |
C1 |
H1 |
358.0 |
360.0 |
| C1 |
C6 |
H6 |
N28 |
180.0 |
180.0 |
| H6 |
C6 |
N28 |
C11 |
181.3 |
180.5 |
| H6 |
C6 |
N28 |
N26 |
6.2 |
360.0 |
| C23 |
C7 |
C10 |
F35 |
357.8 |
359.1 |
| C7 |
C9 |
C3 |
H3 |
182.2 |
180.3 |
| C9 |
C7 |
C10 |
F35 |
180.1 |
180.0 |
| C7 |
C10 |
C4 |
H4 |
180.8 |
179.5 |
| O33 |
C8 |
C3 |
H3 |
359.9 |
359.9 |
| C3 |
C8 |
O33 |
C4 |
178.0 |
180.1 |
| O33 |
C8 |
C4 |
H4 |
358.7 |
0.0 |
| C8 |
O33 |
C22 |
H22 |
180.0 |
180.0 |
| C8 |
O33 |
C22 |
H22A |
300.0 |
300.0 |
| C8 |
O33 |
C22 |
H22B |
60.0 |
60.0 |
| F34 |
C9 |
C3 |
H3 |
360.0 |
0.3 |
| F35 |
C10 |
C4 |
H4 |
0.0 |
0.4 |
| C14 |
C11 |
C2 |
H2 |
353.4 |
360.0 |
| C2 |
C11 |
C14 |
N28 |
185.9 |
180.3 |
| C6 |
N28 |
C11 |
C14 |
184.4 |
179.8 |
| C14 |
C11 |
N28 |
N26 |
359.8 |
0.2 |
| C11 |
C14 |
N25 |
C15 |
2.1 |
360.0 |
| N28 |
C11 |
C2 |
H2 |
178.9 |
180.3 |
| C2 |
C11 |
N28 |
C14 |
175.4 |
179.8 |
| C11 |
N28 |
C6 |
H6 |
181.3 |
180.5 |
| C6 |
N28 |
C11 |
N26 |
184.7 |
179.6 |
| N28 |
C11 |
C14 |
N25 |
357.9 |
359.7 |
| N27 |
C12 |
C5 |
H5 |
176.6 |
180.0 |
| N27 |
C12 |
C21 |
H21 |
0.0 |
270.0 |
| N27 |
C12 |
C21 |
H21A |
120.0 |
30.1 |
| N27 |
C12 |
C21 |
H21B |
240.0 |
150.0 |
| C21 |
C12 |
C5 |
H5 |
1.9 |
0.1 |
| H21 |
C21 |
C12 |
H21A |
240.0 |
240.0 |
| H21 |
C21 |
C12 |
H21B |
120.0 |
120.0 |
| H21A |
C21 |
C12 |
H21B |
240.0 |
240.0 |
| N24 |
C13 |
C5 |
H5 |
182.8 |
180.0 |
| N31 |
C13 |
C5 |
H5 |
357.9 |
359.9 |
| N25 |
C14 |
C11 |
N28 |
357.9 |
359.7 |
| C14 |
N25 |
C15 |
N29 |
183.8 |
180.0 |
| N26 |
C15 |
N25 |
N29 |
176.5 |
180.5 |
| N25 |
C15 |
N29 |
C17 |
183.1 |
174.8 |
| N25 |
C15 |
N29 |
C18 |
351.7 |
354.8 |
| C6 |
N28 |
N26 |
C15 |
177.0 |
180.8 |
| C11 |
N28 |
N26 |
C15 |
2.5 |
0.2 |
| N25 |
C15 |
N26 |
N29 |
183.6 |
179.5 |
| N26 |
C15 |
N29 |
C17 |
6.5 |
354.2 |
| N26 |
C15 |
N29 |
C18 |
175.1 |
174.3 |
| C15 |
N29 |
C17 |
H17 |
226.8 |
115.5 |
| C15 |
N29 |
C17 |
H17A |
346.8 |
355.1 |
| C15 |
N29 |
C18 |
H18 |
130.4 |
5.1 |
| C15 |
N29 |
C18 |
H18A |
10.4 |
244.6 |
| C23 |
C16 |
N30 |
O32 |
181.7 |
180.0 |
| N30 |
C16 |
C23 |
H23 |
310.2 |
60.1 |
| N30 |
C16 |
C23 |
H23A |
190.3 |
300.0 |
| N30 |
C16 |
C23 |
O32 |
178.3 |
180.0 |
| H23 |
C23 |
C16 |
H23A |
120.0 |
120.1 |
| O32 |
C16 |
C23 |
H23 |
131.9 |
240.1 |
| O32 |
C16 |
C23 |
H23A |
11.9 |
120.0 |
| C15 |
N29 |
C17 |
C18 |
169.4 |
180.0 |
| C19 |
C17 |
N29 |
H17 |
240.0 |
119.8 |
| C19 |
C17 |
N29 |
H17A |
120.0 |
240.2 |
| H17 |
C17 |
N29 |
H17A |
240.0 |
120.4 |
| C15 |
N29 |
C17 |
C19 |
106.8 |
235.3 |
| N29 |
C17 |
C19 |
H17 |
120.0 |
240.1 |
| N29 |
C17 |
C19 |
H17A |
240.0 |
119.8 |
| H17 |
C17 |
C19 |
H17A |
120.0 |
239.7 |
| N29 |
C17 |
H17 |
H17A |
120.0 |
239.6 |
| C19 |
C17 |
H17 |
H17A |
239.9 |
120.2 |
| N29 |
C17 |
H17A |
H17 |
240.0 |
120.4 |
| C19 |
C17 |
H17A |
H17 |
120.1 |
239.8 |
| C15 |
N29 |
C18 |
C20 |
250.4 |
124.9 |
| N29 |
C18 |
C20 |
H18 |
240.0 |
240.1 |
| N29 |
C18 |
C20 |
H18A |
120.0 |
119.8 |
| H18 |
C18 |
C20 |
H18A |
240.0 |
239.7 |
| C15 |
N29 |
C18 |
C17 |
190.5 |
180.0 |
| C18 |
N29 |
C17 |
H17 |
57.4 |
295.5 |
| C18 |
N29 |
C17 |
H17A |
177.4 |
175.1 |
| C20 |
C18 |
N29 |
H18 |
120.0 |
119.8 |
| C20 |
C18 |
N29 |
H18A |
240.0 |
240.3 |
| H18 |
C18 |
N29 |
H18A |
120.0 |
120.5 |
| C20 |
C18 |
H18 |
H18A |
120.7 |
120.3 |
| N29 |
C18 |
H18 |
H18A |
239.3 |
239.5 |
| C20 |
C18 |
H18A |
H18 |
239.3 |
239.7 |
| N29 |
C18 |
H18A |
H18 |
120.7 |
120.6 |
| C19 |
N30 |
C16 |
O32 |
2.0 |
360.0 |
| N30 |
C19 |
C17 |
H17 |
292.7 |
70.4 |
| N30 |
C19 |
C17 |
H17A |
172.6 |
190.7 |
| H19 |
C19 |
N30 |
H19A |
120.0 |
120.5 |
| C19 |
N30 |
C20 |
H20 |
288.5 |
185.1 |
| C19 |
N30 |
C20 |
H20A |
168.5 |
64.6 |
| H19 |
C19 |
C17 |
H17 |
52.7 |
190.1 |
| H19 |
C19 |
C17 |
H17A |
292.6 |
310.4 |
| N30 |
C19 |
H19 |
H19A |
239.8 |
239.6 |
| H19 |
C19 |
N30 |
C20 |
191.0 |
295.5 |
| H19A |
C19 |
C17 |
H17 |
172.7 |
310.7 |
| H19A |
C19 |
C17 |
H17A |
52.6 |
70.9 |
| N30 |
C19 |
H19A |
H19 |
120.2 |
120.4 |
| H19A |
C19 |
N30 |
C20 |
71.0 |
175.0 |
| C20 |
N30 |
C16 |
O32 |
179.4 |
180.0 |
| N30 |
C20 |
C18 |
H18 |
70.2 |
169.2 |
| N30 |
C20 |
C18 |
H18A |
190.3 |
289.5 |
| C20 |
N30 |
C19 |
H19 |
191.0 |
295.5 |
| C20 |
N30 |
C19 |
H19A |
71.0 |
175.0 |
| H20 |
C20 |
N30 |
H20A |
120.0 |
120.5 |
| H20 |
C20 |
C18 |
H18 |
190.2 |
288.9 |
| H20 |
C20 |
C18 |
H18A |
310.3 |
49.3 |
| N30 |
C20 |
H20 |
H20A |
241.0 |
239.6 |
| H20A |
C20 |
C18 |
H18 |
310.2 |
49.4 |
| H20A |
C20 |
C18 |
H18A |
70.3 |
169.8 |
| N30 |
C20 |
H20A |
H20 |
119.0 |
120.4 |
| C12 |
C21 |
H21 |
H21A |
120.0 |
120.0 |
| C12 |
C21 |
H21 |
H21B |
240.0 |
240.0 |
| H21A |
C21 |
H21 |
H21B |
120.0 |
120.1 |
| C12 |
C21 |
H21A |
H21 |
240.0 |
240.0 |
| C12 |
C21 |
H21A |
H21B |
120.0 |
119.9 |
| H21 |
C21 |
H21A |
H21B |
240.0 |
239.9 |
| C12 |
C21 |
H21B |
H21 |
120.0 |
120.0 |
| C12 |
C21 |
H21B |
H21A |
240.0 |
240.1 |
| H21 |
C21 |
H21B |
H21A |
120.0 |
120.1 |
| H22 |
C22 |
O33 |
H22A |
240.0 |
240.0 |
| H22 |
C22 |
O33 |
H22B |
120.0 |
120.0 |
| H22A |
C22 |
O33 |
H22B |
240.0 |
240.0 |
| O33 |
C22 |
H22 |
H22A |
120.0 |
120.0 |
| O33 |
C22 |
H22 |
H22B |
240.0 |
239.9 |
| H22A |
C22 |
H22 |
H22B |
120.0 |
119.9 |
| O33 |
C22 |
H22A |
H22 |
240.0 |
240.0 |
| O33 |
C22 |
H22A |
H22B |
120.0 |
120.1 |
| H22 |
C22 |
H22A |
H22B |
240.0 |
240.1 |
| O33 |
C22 |
H22B |
H22 |
120.0 |
120.1 |
| O33 |
C22 |
H22B |
H22A |
240.0 |
240.0 |
| H22 |
C22 |
H22B |
H22A |
120.0 |
119.9 |
| H23 |
C23 |
C16 |
O32 |
131.9 |
240.1 |
| C16 |
C23 |
H23 |
H23A |
242.0 |
240.0 |
| H23A |
C23 |
C16 |
O32 |
11.9 |
120.0 |
| C16 |
C23 |
H23A |
H23 |
118.0 |
120.0 |
| N26 |
N28 |
C6 |
H6 |
6.2 |
360.0 |
| C6 |
N28 |
N26 |
C11 |
174.5 |
180.5 |
| N28 |
N26 |
C15 |
N29 |
173.9 |
180.0 |