PDB Chemical Component J21

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J21

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5 C7 1.191 1.209
O6 C7 1.323 1.342
C7 C6 1.483 1.507
O7 C12 1.245 1.216
C6 N1 1.417 1.465
C6 C8 1.522 1.531
N1 C5 1.326 1.348
C11 N2 1.463 1.465
C11 C10 1.547 1.530
C12 N2 1.347 1.348
C12 C13 1.495 1.475
C9 C8 1.520 1.530
C9 C10 1.532 1.531
C14 C13 1.417 1.397
C14 C15 1.370 1.378
C5 N 1.338 1.348
C5 O4 1.257 1.216
N C1 1.469 1.465
C13 C18 1.403 1.401
C15 C16 1.386 1.386
C1 C2 1.554 1.529
C1 C 1.512 1.507
C18 O8 1.403 1.356
C18 C17 1.398 1.386
C16 C17 1.409 1.382
C16 BR 1.888 1.891
C2 C3 1.539 1.529
C3 C4 1.527 1.507
O8 C19 1.460 1.429
O2 C4 1.254 1.207
C O1 1.270 1.209
C O 1.334 1.342
C4 O3 1.327 1.343
C22 C21 1.504 1.508
N3 C21 1.370 1.348
N3 C20 1.479 1.465
C19 C20 1.537 1.530
C21 O9 1.218 1.213
C1 H1 1.100 1.090
C2 H2 1.100 1.090
C2 H3 1.100 1.091
C3 H4 1.100 1.090
C3 H5 1.100 1.091
C6 H6 1.100 1.090
C22 H7 1.100 1.089
C22 H8 1.100 1.090
C22 H9 1.100 1.091
C20 H10 1.100 1.090
C19 H11 1.100 1.089
C19 H12 1.100 1.090
C17 H13 1.080 1.080
C15 H14 1.080 1.080
C14 H15 1.080 1.080
C11 H16 1.100 1.090
C10 H17 1.100 1.090
C10 H18 1.100 1.090
C9 H19 1.100 1.090
C9 H20 1.100 1.089
C8 H21 1.100 1.090
C8 H22 1.100 1.089
O6 H23 0.950 0.968
N1 H24 1.000 0.969
N H25 1.000 0.970
O H26 0.950 0.967
O3 H27 0.950 0.968
N3 H28 1.000 0.971
C20 H29 1.100 1.090
N2 H30 1.000 0.970
C11 H31 1.100 1.090

Bond Angles for J21

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C7 C6 N1 109.4 109.5
C7 C6 H6 109.8 109.5
O7 C12 N2 124.8 120.0
C8 C6 N1 106.0 109.5
N1 C6 H6 110.7 109.5
C6 N1 H24 117.1 120.0
C6 C8 C9 114.5 109.4
C8 C6 H6 109.2 109.4
C6 C8 H21 108.2 109.4
C6 C8 H22 108.2 109.5
N1 C5 N 117.0 120.0
N1 C5 O4 123.9 120.1
C11 N2 H30 117.9 120.0
C10 C11 H16 107.8 109.5
C11 C10 H17 110.5 109.5
C11 C10 H18 110.4 109.5
C10 C11 H31 107.8 109.4
C12 N2 H30 118.0 120.0
C8 C9 H19 108.5 109.5
C8 C9 H20 108.5 109.5
C9 C8 H21 108.2 109.4
C9 C8 H22 108.2 109.5
C9 C10 H17 110.4 109.5
C9 C10 H18 110.5 109.5
C13 C14 H15 119.1 120.1
C14 C15 H14 121.8 119.9
O4 C5 N 119.1 120.0
C5 N H25 120.1 120.0
N C1 C 107.6 109.4
N C1 H1 110.0 109.5
C2 C1 C 105.6 109.5
C1 C2 C3 110.4 109.5
C2 C1 H1 109.0 109.5
C1 C2 H2 109.3 109.5
C1 C2 H3 109.3 109.4
C1 C O1 124.1 120.0
C1 C O 116.0 120.0
C C1 H1 109.5 109.4
C18 C17 H13 119.9 120.0
C16 C17 H13 119.9 120.0
C2 C3 C4 113.0 109.5
C3 C2 H2 109.2 109.5
C3 C2 H3 109.2 109.5
C2 C3 H4 108.6 109.5
C2 C3 H5 108.6 109.5
C3 C4 O3 120.8 120.0
C4 C3 H4 108.6 109.5
C4 C3 H5 108.6 109.5
O8 C19 H11 107.6 109.5
O8 C19 H12 107.6 109.5
O2 C4 O3 118.7 120.0
C O H26 109.5 117.0
C4 O3 H27 109.5 116.9
N3 C20 H10 107.2 109.5
C20 N3 H28 118.5 120.0
N3 C20 H29 107.2 109.4
C19 C20 H10 107.2 109.5
C19 C20 H29 107.2 109.5
H2 C2 H3 109.5 109.4
H4 C3 H5 109.5 109.4
H7 C22 H8 109.5 109.5
H7 C22 H9 109.4 109.5
H8 C22 H9 109.5 109.4
H10 C20 H29 109.5 109.5
H11 C19 H12 109.5 109.5
H16 C11 H31 109.5 109.5
H17 C10 H18 109.5 109.5
H19 C9 H20 109.5 109.4
H21 C8 H22 109.5 109.5

Torsion Angles for J21

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5 C7 C6 N1 133.7 0.1
O5 C7 C6 H6 12.0 240.0
O6 C7 C6 N1 314.3 180.0
O6 C7 C6 H6 192.6 59.9
C8 C6 C7 N1 117.0 120.0
N1 C6 C7 H6 121.7 120.1
C7 C6 N1 H24 26.9 94.9
C8 C6 C7 H6 238.7 240.1
C7 C6 C8 H21 185.0 294.9
C7 C6 C8 H22 303.6 55.0
O7 C12 N2 H30 181.6 180.0
C7 C6 N1 H6 238.9 239.9
N1 C6 C8 C9 183.3 295.0
C8 C6 N1 H6 118.4 120.0
N1 C6 C8 H21 304.1 55.0
N1 C6 C8 H22 62.6 175.0
C6 N1 C5 N 186.1 180.0
C6 N1 C5 O4 4.1 0.0
C7 C6 C8 N1 241.0 240.0
C7 C6 C8 H6 121.6 120.0
N1 C6 C8 H6 240.6 240.0
C8 C6 N1 H24 266.4 334.9
C6 C8 C9 H19 313.6 60.0
C6 C8 C9 H20 72.5 300.0
C9 C8 C6 H21 239.3 240.1
C9 C8 C6 H22 120.7 120.0
H21 C8 C6 H22 241.5 240.0
O4 C5 N1 N 178.1 180.1
N1 C5 N H25 341.7 0.1
C12 N2 C11 H30 180.0 180.1
C10 C11 N2 H30 352.2 360.0
C9 C10 C11 H17 240.6 240.0
C9 C10 C11 H18 119.4 120.0
H16 C11 C10 H31 118.1 120.0
H17 C10 C11 H18 238.8 240.0
C11 N2 C12 H30 180.0 179.9
C12 C13 C14 H15 1.8 359.5
C9 C8 C6 N1 183.3 295.0
C9 C8 C6 H6 302.7 55.0
C6 C8 C9 H21 120.7 119.9
C6 C8 C9 H22 239.3 239.9
C8 C9 C10 H17 335.9 60.0
C8 C9 C10 H18 214.6 300.0
H19 C9 C8 H20 241.1 120.0
H21 C8 C9 H22 118.5 120.0
C6 C8 C9 C10 193.1 180.0
C9 C10 C11 H16 69.8 60.0
C11 C10 C9 H17 119.4 120.0
C11 C10 C9 H18 240.6 240.0
C9 C10 C11 H31 311.7 300.0
H17 C10 C9 H18 121.2 120.0
C13 C14 C15 H14 179.4 179.7
N1 C5 N O4 178.2 180.1
C5 N C1 C 306.5 275.0
C5 N C1 H1 65.6 35.0
N1 C5 O4 N 182.0 179.9
O4 C5 N H25 163.5 180.0
C2 C1 N C 242.7 240.0
C2 C1 N H1 123.5 120.1
N C1 C2 H2 171.5 55.0
N C1 C2 H3 291.3 175.0
N C1 C O1 331.6 360.0
N C1 C O 153.6 180.0
C C1 N H1 240.8 240.1
C13 C18 C17 H13 180.0 180.2
C15 C16 C17 H13 178.3 180.0
N C1 C2 C 118.4 120.0
N C1 C2 H1 235.9 240.0
C2 C1 C O1 94.9 120.0
C2 C1 C O 276.9 300.0
C C1 C2 H1 117.5 120.0
C1 C2 C3 C4 169.6 180.0
C3 C2 C1 H2 239.9 239.9
C3 C2 C1 H3 120.1 120.0
C1 C2 C3 H4 290.1 300.0
C1 C2 C3 H5 49.1 60.0
H2 C2 C1 H3 240.3 240.1
N C1 C H1 119.6 120.0
C C1 C2 C3 293.0 175.0
C2 C1 C H1 242.9 240.0
C C1 C2 H2 53.1 295.0
C C1 C2 H3 172.8 55.0
C1 C O H26 178.1 179.9
C18 O8 C19 H11 309.8 60.0
C18 O8 C19 H12 67.7 300.0
C16 C17 C18 H13 180.0 180.1
C18 C17 C16 H13 180.0 179.9
BR C16 C17 H13 357.1 0.0
C3 C2 C1 C 293.0 175.0
C3 C2 C1 H1 175.5 55.0
C1 C2 C3 H2 120.1 120.0
C1 C2 C3 H3 239.8 240.0
C2 C3 C4 O3 338.7 180.0
C4 C3 C2 H4 239.5 240.0
C4 C3 C2 H5 120.5 120.0
H2 C2 C3 H3 119.7 120.0
H4 C3 C2 H5 241.0 240.0
C4 C3 C2 H2 49.5 60.0
C4 C3 C2 H3 289.8 300.0
C2 C3 C4 H4 120.5 120.1
C2 C3 C4 H5 239.5 240.0
O2 C4 C3 O3 180.0 180.1
C3 C4 O3 H27 180.0 180.0
H4 C3 C4 H5 118.9 119.9
O8 C19 C20 H10 202.5 305.0
O8 C19 C20 H29 85.0 185.0
H11 C19 O8 H12 242.1 120.0
C3 C4 O2 O3 180.0 179.9
O2 C4 C3 H4 38.2 240.0
O2 C4 C3 H5 279.2 120.1
O2 C4 O3 H27 0.0 359.9
C1 C O1 O 182.0 180.0
O1 C C1 H1 212.0 240.0
C1 C O O1 178.1 180.0
O C C1 H1 34.0 60.0
O3 C4 C3 H4 218.1 59.9
O3 C4 C3 H5 99.2 300.0
C19 C20 N3 H10 238.7 240.0
C19 C20 N3 H29 121.2 120.0
H10 C20 N3 H29 242.5 240.0
N3 C20 C19 H10 121.3 120.0
C19 C20 N3 H28 2.2 0.0
N3 C20 C19 H29 238.7 240.0
H10 C20 C19 H29 117.5 120.0
N C1 H1 C 242.0 240.1
C2 C1 H1 C 115.0 120.0
H1 C1 C2 C3 175.5 55.0
H1 C1 C2 H2 295.6 175.0
H1 C1 C2 H3 55.4 295.0
H1 C1 C O1 212.0 240.0
H1 C1 C O 34.0 60.0
H2 C2 C1 C 53.1 295.0
C1 C2 H2 C3 239.2 240.0
H2 C2 C1 H1 295.6 175.0
C1 C2 H2 H3 119.6 120.0
H2 C2 C3 C4 49.5 60.0
C3 C2 H2 H3 240.4 240.0
H2 C2 C3 H4 170.0 180.0
H2 C2 C3 H5 288.9 300.0
H3 C2 C1 C 172.8 55.0
C1 C2 H3 C3 120.8 120.0
H3 C2 C1 H1 55.4 295.0
C1 C2 H3 H2 240.4 240.0
H3 C2 C3 C4 289.8 300.0
C3 C2 H3 H2 119.6 120.0
H3 C2 C3 H4 50.3 60.0
H3 C2 C3 H5 169.2 180.0
C2 C3 H4 C4 236.8 240.0
H4 C3 C2 H2 170.0 180.0
H4 C3 C2 H3 50.3 60.0
C2 C3 H4 H5 118.4 120.0
H4 C3 C4 O3 218.1 59.9
C4 C3 H4 H5 241.6 240.0
C2 C3 H5 C4 123.2 120.0
H5 C3 C2 H2 288.9 300.0
H5 C3 C2 H3 169.2 180.0
C2 C3 H5 H4 241.6 240.0
H5 C3 C4 O3 99.2 300.0
C4 C3 H5 H4 118.4 120.0
C7 C6 H6 N1 120.9 120.1
C8 C6 H6 N1 243.6 240.0
H6 C6 N1 H24 148.0 215.0
H6 C6 C8 C9 302.7 55.0
H6 C6 C8 H21 63.4 175.0
H6 C6 C8 H22 182.0 295.0
H8 C22 H7 H9 120.0 120.0
H7 C22 H8 H9 240.0 239.9
H7 C22 H9 H8 120.0 120.1
H10 C20 N3 H28 123.5 120.0
N3 C20 H10 H29 116.0 120.0
C19 C20 H10 H29 244.0 240.0
O8 C19 H11 H12 116.7 240.0
H11 C19 C20 H10 81.5 65.0
H11 C19 C20 H29 324.0 305.0
O8 C19 H12 H11 243.3 120.0
H12 C19 C20 H10 323.5 185.0
H12 C19 C20 H29 206.1 65.0
H15 C14 C15 H14 359.4 0.2
H16 C11 N2 H30 113.2 120.0
H16 C11 C10 H17 189.2 180.0
H16 C11 C10 H18 310.4 300.0
C10 C11 H16 H31 243.1 240.0
H17 C10 C11 H16 189.2 180.0
C11 C10 H17 H18 121.8 120.0
H17 C10 C11 H31 71.1 60.0
C9 C10 H17 H18 238.2 240.0
H18 C10 C11 H16 310.4 300.0
C11 C10 H18 H17 238.2 240.0
H18 C10 C11 H31 192.3 180.0
C9 C10 H18 H17 121.8 120.0
C8 C9 H19 H20 118.3 240.0
H19 C9 C8 H21 192.9 300.0
H19 C9 C8 H22 74.4 180.0
H19 C9 C10 H17 215.3 180.0
H19 C9 C10 H18 94.0 60.0
C8 C9 H20 H19 241.7 120.0
H20 C9 C8 H21 311.8 180.0
H20 C9 C8 H22 193.2 60.0
H20 C9 C10 H17 96.4 300.0
H20 C9 C10 H18 335.2 180.0
H21 C8 C6 N1 304.1 55.0
C6 C8 H21 C9 235.4 240.1
H21 C8 C6 H6 63.4 175.0
C6 C8 H21 H22 117.7 120.1
H21 C8 C9 H19 192.9 300.0
H21 C8 C9 H20 311.8 180.0
C9 C8 H21 H22 242.3 240.0
H22 C8 C6 N1 62.6 175.0
C6 C8 H22 C9 124.6 120.0
H22 C8 C6 H6 182.0 295.0
C6 C8 H22 H21 242.3 240.0
H22 C8 C9 H19 74.4 180.0
H22 C8 C9 H20 193.2 60.0
C9 C8 H22 H21 117.7 120.0
H24 N1 C6 H6 148.0 215.0
H24 N1 C5 N 6.1 0.0
H24 N1 C5 O4 184.1 180.1
H25 N C1 C 126.4 95.0
H25 N C1 H1 245.6 214.9
H28 N3 C20 H10 123.5 120.0
H28 N3 C20 H29 241.0 240.0
N3 C20 H29 H10 244.0 240.0
H29 C20 N3 H28 241.0 240.0
C19 C20 H29 H10 116.0 120.0
H31 C11 N2 H30 231.2 240.0
C10 C11 H31 H16 117.0 120.0
H31 C11 C10 H17 71.1 60.0
H31 C11 C10 H18 192.3 180.0