PDB Chemical Component J1X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for J1X
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N25 |
N24 |
1.318 |
1.290 |
| N25 |
N26 |
1.342 |
1.284 |
| C15 |
C14 |
1.437 |
1.399 |
| C15 |
C16 |
1.397 |
1.353 |
| C14 |
N13 |
1.312 |
1.309 |
| N24 |
N23 |
1.329 |
1.406 |
| N26 |
C22 |
1.334 |
1.316 |
| C16 |
N12 |
1.329 |
1.353 |
| N13 |
N12 |
1.318 |
1.400 |
| N23 |
C22 |
1.359 |
1.356 |
| C22 |
C21 |
1.502 |
1.480 |
| N12 |
C11 |
1.435 |
1.403 |
| C20 |
C21 |
1.374 |
1.394 |
| C20 |
C19 |
1.360 |
1.387 |
| C21 |
C27 |
1.384 |
1.396 |
| C11 |
C17 |
1.389 |
1.385 |
| C11 |
C10 |
1.404 |
1.389 |
| C17 |
C03 |
1.402 |
1.396 |
| N18 |
C19 |
1.453 |
1.399 |
| N18 |
C02 |
1.458 |
1.348 |
| C19 |
C29 |
1.401 |
1.389 |
| C27 |
C28 |
1.385 |
1.380 |
| C10 |
C05 |
1.406 |
1.383 |
| C03 |
C02 |
1.525 |
1.479 |
| C03 |
C04 |
1.387 |
1.396 |
| C02 |
O01 |
1.202 |
1.216 |
| C29 |
C28 |
1.381 |
1.382 |
| C05 |
C04 |
1.399 |
1.380 |
| C05 |
C06 |
1.515 |
1.506 |
| F07 |
C06 |
1.359 |
1.399 |
| C06 |
F09 |
1.364 |
1.399 |
| C06 |
F08 |
1.349 |
1.399 |
| C04 |
H1 |
1.080 |
1.080 |
| C10 |
H2 |
1.080 |
1.080 |
| C14 |
H3 |
1.080 |
1.080 |
| C15 |
H4 |
1.080 |
1.080 |
| C16 |
H5 |
1.080 |
1.080 |
| C17 |
H6 |
1.080 |
1.080 |
| C20 |
H7 |
1.080 |
1.080 |
| C27 |
H8 |
1.080 |
1.080 |
| C28 |
H9 |
1.080 |
1.081 |
| C29 |
H10 |
1.080 |
1.080 |
| N18 |
H11 |
1.000 |
0.969 |
| N23 |
H12 |
1.000 |
0.969 |
Bond Angles for J1X
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C14 |
N13 |
101.5 |
108.2 |
| C15 |
C14 |
H3 |
129.2 |
125.9 |
| C15 |
C16 |
N12 |
101.2 |
107.7 |
| C16 |
C15 |
H4 |
124.2 |
126.0 |
| C15 |
C16 |
H5 |
129.4 |
126.2 |
| C14 |
N13 |
N12 |
112.3 |
108.2 |
| N13 |
C14 |
H3 |
129.3 |
125.9 |
| N24 |
N23 |
H12 |
127.0 |
127.4 |
| N12 |
C16 |
H5 |
129.4 |
126.1 |
| C22 |
C21 |
C27 |
120.3 |
120.1 |
| C20 |
C21 |
C27 |
123.1 |
119.8 |
| C21 |
C20 |
H7 |
120.7 |
120.0 |
| C20 |
C19 |
C29 |
120.3 |
120.0 |
| C21 |
C27 |
C28 |
117.7 |
120.0 |
| C21 |
C27 |
H8 |
121.1 |
120.0 |
| C11 |
C17 |
H6 |
122.2 |
120.2 |
| C11 |
C10 |
H2 |
119.9 |
119.9 |
| N18 |
C02 |
O01 |
125.2 |
120.0 |
| C19 |
C29 |
C28 |
120.1 |
120.2 |
| C19 |
C29 |
H10 |
120.0 |
119.9 |
| C28 |
C27 |
H8 |
121.1 |
120.0 |
| C27 |
C28 |
H9 |
119.9 |
119.8 |
| C03 |
C02 |
O01 |
117.4 |
120.0 |
| C03 |
C04 |
H1 |
121.2 |
120.0 |
| C29 |
C28 |
H9 |
119.9 |
119.9 |
| C05 |
C04 |
H1 |
121.2 |
120.0 |
| C05 |
C06 |
F09 |
107.4 |
109.5 |
| C05 |
C06 |
F08 |
108.7 |
109.5 |
| F07 |
C06 |
F09 |
106.9 |
109.5 |
| F07 |
C06 |
F08 |
110.2 |
109.4 |
| F08 |
C06 |
F09 |
111.3 |
109.5 |
Torsion Angles for J1X
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N25 |
N24 |
N23 |
H12 |
180.1 |
180.0 |
| C15 |
C14 |
N13 |
N12 |
358.0 |
360.0 |
| N13 |
C14 |
C15 |
H3 |
180.0 |
180.3 |
| C16 |
C15 |
C14 |
N13 |
2.0 |
0.0 |
| C16 |
C15 |
C14 |
H3 |
182.0 |
179.7 |
| N12 |
C16 |
C15 |
H5 |
180.0 |
180.0 |
| C15 |
C14 |
N13 |
H3 |
180.0 |
179.7 |
| N12 |
C16 |
C15 |
H4 |
178.8 |
180.0 |
| C15 |
C16 |
N12 |
H5 |
180.0 |
180.0 |
| C14 |
N13 |
N12 |
C16 |
1.4 |
0.0 |
| N12 |
N13 |
C14 |
H3 |
178.1 |
180.3 |
| N13 |
N12 |
C16 |
H5 |
180.0 |
180.0 |
| C20 |
C21 |
C22 |
C27 |
180.8 |
180.0 |
| C22 |
C21 |
C20 |
H7 |
359.8 |
360.0 |
| C22 |
C21 |
C27 |
C28 |
180.0 |
180.0 |
| C22 |
C21 |
C27 |
H8 |
360.0 |
359.9 |
| N12 |
C11 |
C17 |
H6 |
359.1 |
359.5 |
| N12 |
C11 |
C10 |
H2 |
359.9 |
0.3 |
| C22 |
C21 |
C20 |
C27 |
179.2 |
180.0 |
| C21 |
C20 |
C19 |
C29 |
358.7 |
359.9 |
| C20 |
C21 |
C27 |
C28 |
359.1 |
360.0 |
| C20 |
C21 |
C27 |
H8 |
179.1 |
179.9 |
| C20 |
C19 |
C29 |
C28 |
2.4 |
0.1 |
| C20 |
C19 |
C29 |
H10 |
182.3 |
180.0 |
| C27 |
C21 |
C20 |
H7 |
180.6 |
180.0 |
| C28 |
C27 |
C21 |
H8 |
180.0 |
180.0 |
| C21 |
C27 |
C28 |
H9 |
181.9 |
180.0 |
| C17 |
C11 |
C10 |
H2 |
178.3 |
179.8 |
| C17 |
C03 |
C02 |
O01 |
148.4 |
359.7 |
| C17 |
C03 |
C04 |
H1 |
178.9 |
180.2 |
| C19 |
N18 |
C02 |
O01 |
1.4 |
355.4 |
| N18 |
C19 |
C29 |
H10 |
360.0 |
0.2 |
| C03 |
C02 |
N18 |
O01 |
179.7 |
179.7 |
| C19 |
C29 |
C28 |
H9 |
177.3 |
180.0 |
| C21 |
C27 |
C28 |
H8 |
180.0 |
180.0 |
| C19 |
C29 |
C28 |
C27 |
357.3 |
359.9 |
| C29 |
C28 |
C27 |
H9 |
180.0 |
180.1 |
| C10 |
C05 |
C04 |
H1 |
180.3 |
180.1 |
| C10 |
C05 |
C06 |
F09 |
291.2 |
180.0 |
| C10 |
C05 |
C06 |
F08 |
170.7 |
60.0 |
| N18 |
C02 |
C03 |
O01 |
180.2 |
180.3 |
| C04 |
C03 |
C02 |
O01 |
327.3 |
180.0 |
| C05 |
C04 |
C03 |
H1 |
180.0 |
180.0 |
| C19 |
C29 |
C28 |
H10 |
180.0 |
179.9 |
| C29 |
C28 |
C27 |
H8 |
181.9 |
180.1 |
| C27 |
C28 |
C29 |
H9 |
180.0 |
179.9 |
| C03 |
C04 |
C05 |
H1 |
180.0 |
180.0 |
| C06 |
C05 |
C04 |
H1 |
0.3 |
0.0 |
| F07 |
C06 |
C05 |
F09 |
117.2 |
120.0 |
| F07 |
C06 |
C05 |
F08 |
237.8 |
240.1 |
| F08 |
C06 |
C05 |
F09 |
239.4 |
240.0 |
| C05 |
C06 |
F07 |
F09 |
242.4 |
240.0 |
| C05 |
C06 |
F07 |
F08 |
121.4 |
120.0 |
| F08 |
C06 |
F07 |
F09 |
121.0 |
120.0 |
| C05 |
C06 |
F09 |
F08 |
241.1 |
239.9 |
| F07 |
C06 |
F09 |
F08 |
120.3 |
119.9 |
| C05 |
C06 |
F08 |
F09 |
118.1 |
120.0 |
| F07 |
C06 |
F08 |
F09 |
241.7 |
240.0 |
| C15 |
C14 |
H3 |
N13 |
180.0 |
180.3 |
| H3 |
C14 |
N13 |
N12 |
178.1 |
180.3 |
| H4 |
C15 |
C14 |
N13 |
182.0 |
180.0 |
| H4 |
C15 |
C14 |
H3 |
2.0 |
359.7 |
| H4 |
C15 |
C16 |
N12 |
178.8 |
180.0 |
| H4 |
C15 |
C16 |
H5 |
358.8 |
0.0 |
| C15 |
C16 |
H5 |
N12 |
180.0 |
180.0 |
| H5 |
C16 |
C15 |
H4 |
358.8 |
0.0 |
| H7 |
C20 |
C21 |
C27 |
180.6 |
180.0 |
| H7 |
C20 |
C19 |
C29 |
178.7 |
180.0 |
| C21 |
C27 |
H8 |
C28 |
180.0 |
180.0 |
| H8 |
C27 |
C28 |
H9 |
1.9 |
0.0 |
| H9 |
C28 |
C27 |
H8 |
1.9 |
0.0 |
| C19 |
C29 |
H10 |
C28 |
180.0 |
180.1 |
| H10 |
C29 |
C28 |
H9 |
357.4 |
0.1 |
| H11 |
N18 |
C02 |
O01 |
181.4 |
175.4 |