PDB Chemical Component J1L

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J1L

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N4 C8 1.362 1.321
N4 C7 1.376 1.329
C8 N5 1.366 1.316
N3 C7 1.368 1.384
C7 C6 1.375 1.405
N5 C9 1.356 1.329
C6 C9 1.398 1.405
C6 N2 1.385 1.355
C9 N1 1.368 1.372
N2 C5 1.309 1.302
O3 C3 1.391 1.429
C3 C4 1.485 1.545
C3 C2 1.590 1.544
N1 C5 1.385 1.363
N1 C4 1.435 1.465
O5 C20 1.221 1.218
C4 O1 1.413 1.446
C15 C14 1.504 1.530
C15 C11 1.504 1.531
C2 O2 1.422 1.428
C2 C1 1.483 1.545
C14 N6 1.505 1.469
C20 N10 1.434 1.352
C20 C26 1.430 1.417
N10 C19 1.339 1.361
O1 C1 1.427 1.444
C10 C1 1.532 1.530
C10 S1 1.817 1.814
N6 C16 1.485 1.470
N6 C13 1.506 1.468
C11 S1 1.831 1.814
C11 C12 1.526 1.531
C16 C27 1.479 1.530
C27 N28 1.430 1.465
N28 C18 1.346 1.348
N9 C19 1.365 1.367
C19 N8 1.316 1.320
C26 N11 1.379 1.339
C26 C25 1.361 1.413
N11 C21 1.289 1.303
S1 O02 1.736 1.421
S1 O04 1.692 1.421
C12 C13 1.532 1.531
C13 C01 1.563 1.507
O01 C01 1.277 1.209
C18 C21 1.482 1.464
C18 O4 1.249 1.217
C25 N8 1.372 1.328
C25 N12 1.372 1.377
C21 C22 1.484 1.508
C01 O03 1.246 1.342
N12 C22 1.444 1.472
C22 C23 1.479 1.530
C22 C24 1.508 1.529
C1 H1 1.100 1.090
C10 H10 1.100 1.090
C10 H10A 1.100 1.090
C11 H11 1.100 1.090
C12 H12A 1.100 1.090
C12 H12 1.100 1.090
C13 H02 1.100 1.090
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C15 H15A 1.100 1.090
C15 H15 1.100 1.090
C16 H16A 1.100 1.090
C16 H16 1.100 1.090
C2 H2 1.100 1.091
C23 H23B 1.100 1.091
C23 H23A 1.100 1.090
C23 H23 1.100 1.090
C24 H24B 1.100 1.090
C24 H24 1.100 1.090
C24 H24A 1.100 1.090
C27 H27 1.100 1.090
C27 H27A 1.101 1.090
C3 H3 1.100 1.090
C4 H4 1.100 1.090
C5 H5 1.080 1.081
C8 H8 1.080 1.080
N10 HN10 1.000 0.970
N12 HN12 1.000 0.970
N28 HN28 1.000 0.970
N3 HN3 1.000 0.970
N3 HN3A 1.000 0.970
N9 HN9 1.000 0.969
N9 HN9A 1.000 0.970
O03 H7 0.950 0.967
O2 HO2 0.950 0.968
O3 HO3 0.950 0.967

Bond Angles for J1L

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N4 C8 N5 128.3 122.5
N4 C8 H8 115.9 118.7
C8 N5 C9 112.2 120.7
N5 C8 H8 115.8 118.8
C7 C6 C9 118.2 118.2
C7 C6 N2 131.3 134.7
C9 C6 N2 110.5 107.1
C6 C9 N1 105.1 106.0
N2 C5 H5 123.8 125.0
O3 C3 H3 115.1 110.5
C3 C4 O1 108.4 104.8
C4 C3 H3 113.4 110.5
C3 C4 H4 107.6 110.4
C3 C2 O2 113.7 110.5
C3 C2 H2 109.7 110.7
N1 C5 H5 123.7 125.0
N1 C4 O1 105.8 110.3
N1 C4 H4 108.2 110.4
O1 C4 H4 108.5 110.4
C15 C14 N6 113.0 109.5
C15 C14 H14 108.6 109.5
C15 C14 H14A 108.6 109.5
C15 C11 S1 108.8 109.5
C15 C11 H11 109.0 109.6
O2 C2 H2 112.1 110.4
C2 O2 HO2 109.5 114.0
C2 C1 H1 107.7 110.3
C14 N6 C16 112.7 111.0
N6 C14 H14 108.6 109.4
N6 C14 H14A 108.6 109.5
C26 C20 N10 112.8 118.2
C20 N10 HN10 118.8 119.7
C20 C26 N11 116.9 121.5
C20 C26 C25 119.8 118.3
N10 C19 N8 124.8 122.1
O1 C1 H1 108.5 110.4
C10 C1 H1 107.2 110.4
C10 S1 C11 110.1 101.9
C10 S1 O02 110.9 108.6
C10 S1 O04 107.3 108.6
S1 C10 H10 107.5 109.5
S1 C10 H10A 107.5 109.5
N6 C16 H16A 106.6 109.5
N6 C16 H16 106.6 109.4
N6 C13 H02 110.2 109.5
C12 C11 S1 111.4 109.5
C11 S1 O02 110.7 108.5
C11 S1 O04 108.8 108.6
S1 C11 H11 105.6 109.5
C11 C12 C13 113.8 109.3
C12 C11 H11 108.7 109.6
C11 C12 H12A 108.4 109.5
C11 C12 H12 108.4 109.5
C16 C27 N28 104.2 109.4
C27 C16 H16A 106.6 109.5
C27 C16 H16 106.6 109.5
C16 C27 H27 110.7 109.5
C16 C27 H27A 110.8 109.5
N28 C27 H27 110.8 109.5
N28 C27 H27A 110.8 109.4
C27 N28 HN28 119.1 120.0
N28 C18 O4 123.5 119.9
C19 N8 C25 115.1 121.0
C26 C25 N8 125.1 119.9
C26 C25 N12 120.3 118.4
C13 C12 H12A 108.4 109.5
C13 C12 H12 108.4 109.5
C12 C13 H02 109.9 109.4
C13 C01 O03 117.7 120.0
O01 C01 O03 127.3 120.0
C21 C18 O4 119.4 120.1
C18 C21 C22 119.7 119.3
N12 C25 N8 114.6 121.7
C25 N12 HN12 106.8 121.4
C21 C22 C23 110.8 109.6
C21 C22 C24 112.0 109.6
C01 O03 H7 109.5 117.0
C23 C22 C24 110.5 109.6
C22 C23 H23B 109.5 109.5
C22 C23 H23A 109.5 109.5
C22 C23 H23 109.5 109.5
C22 C24 H24B 109.5 109.5
C22 C24 H24 109.5 109.5
C22 C24 H24A 109.5 109.5
H10 C10 H10A 109.5 109.5
H12A C12 H12 109.5 109.5
H14 C14 H14A 109.5 109.5
H15A C15 H15 109.5 109.5
H16A C16 H16 109.5 109.5
H23B C23 H23A 109.4 109.5
H23B C23 H23 109.5 109.5
H23A C23 H23 109.4 109.5
H24B C24 H24 109.5 109.4
H24B C24 H24A 109.4 109.4
H24 C24 H24A 109.5 109.5
H27 C27 H27A 109.5 109.5
HN3 N3 HN3A 109.5 120.0
HN9 N9 HN9A 120.0 120.0

Torsion Angles for J1L

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N4 C8 N5 C9 359.8 0.0
N5 C8 N4 H8 180.0 180.0
N4 C8 N5 H8 180.0 180.0
C9 C6 C7 N2 180.3 179.9
C7 C6 C9 N1 181.0 180.0
C9 N5 C8 H8 179.8 180.0
C8 N5 C9 C6 359.9 359.9
C7 C6 C9 N2 179.8 180.0
C7 C6 N2 C9 180.3 179.9
N2 C6 C9 N1 1.2 360.0
C6 N2 C5 H5 179.2 179.9
C8 N5 C9 N1 178.8 180.0
N1 C9 C6 N2 1.2 360.0
C9 N1 C5 H5 181.6 180.0
C9 N1 C4 O1 74.5 200.4
C9 N1 C4 H4 190.7 322.8
N1 C5 N2 H5 180.0 179.8
C4 C3 O3 H3 126.5 122.7
O3 C3 C4 H4 26.0 23.8
O3 C3 C2 H2 106.5 122.7
O3 C3 C4 H3 232.5 237.3
C4 C3 C2 O2 91.3 118.7
C4 C3 C2 H2 217.8 241.3
N1 C4 C3 O1 120.2 118.8
N1 C4 C3 H4 237.3 237.7
O1 C4 C3 H4 117.2 118.9
O2 C2 C3 H2 233.5 237.3
C3 C2 O2 HO2 180.0 65.3
C3 C2 C1 H1 122.2 94.8
N2 C5 N1 H5 180.0 180.2
C5 N1 C4 O1 258.0 20.4
C5 N1 C4 H4 14.1 142.7
C3 C4 N1 O1 238.5 244.6
N1 C4 C3 H3 30.8 24.2
C3 C4 N1 H4 122.4 122.3
O1 C4 N1 H4 243.9 237.7
O5 C20 N10 HN10 0.3 0.5
O1 C4 C3 H3 270.6 265.4
C3 C4 O1 H4 243.5 241.1
N1 C4 O1 H4 115.9 122.3
C4 O1 C1 H1 257.5 281.7
C14 C15 C11 S1 276.4 297.8
C14 C15 C11 H11 161.7 177.7
C15 C14 N6 C16 182.4 185.8
N6 C14 C15 H14 239.5 240.0
N6 C14 C15 H14A 120.5 120.0
H14 C14 C15 H14A 241.1 240.0
C10 S1 C11 C15 282.6 304.7
C12 C11 C15 S1 124.3 119.8
C15 C11 S1 O02 45.6 190.2
C15 C11 S1 O04 165.3 59.1
S1 C11 C15 H11 114.7 120.2
C12 C11 C15 H11 238.9 240.0
C15 C11 C12 H12A 77.0 62.3
C15 C11 C12 H12 195.7 182.4
C3 C2 O2 H2 125.2 122.8
O2 C2 C1 H1 2.1 336.2
O1 C1 C2 H1 244.2 241.1
C10 C1 C2 H1 118.3 122.2
C15 C14 N6 H14 120.5 120.0
C15 C14 N6 H14A 239.5 240.0
C14 N6 C16 H16A 73.1 306.1
C14 N6 C16 H16 190.0 186.0
C14 N6 C13 H02 60.7 58.2
H14 C14 N6 H14A 118.9 120.0
N10 C20 C26 N11 180.8 179.5
N10 C20 C26 C25 0.2 358.6
C20 N10 C19 N8 0.6 0.4
C26 C20 N10 HN10 179.6 180.5
C20 C26 C25 N8 359.8 1.4
C20 C26 C25 N12 180.1 181.6
N10 C19 N8 C25 359.5 359.6
C2 C1 O1 H1 115.3 118.8
C10 C1 O1 H1 240.5 237.7
C2 C1 C10 H1 241.4 237.8
O1 C1 C10 H1 120.3 122.3
C15 C11 S1 C10 282.6 304.7
S1 C10 C1 H1 289.5 305.7
C12 C11 S1 C10 157.3 185.0
C11 S1 C10 O02 122.9 245.6
C11 S1 C10 O04 241.7 114.5
C10 S1 C11 H11 39.5 64.9
H10 C10 S1 H10A 117.7 120.1
C16 N6 C14 H14 61.9 65.8
C16 N6 C14 H14A 302.9 305.9
C16 N6 C13 H02 296.1 294.2
C27 C16 N6 H16A 238.4 120.0
C27 C16 N6 H16 121.6 240.0
N6 C16 C27 H27 302.2 299.9
N6 C16 C27 H27A 63.9 60.0
H16A C16 N6 H16 243.1 120.1
N6 C13 C12 H12A 294.0 299.2
N6 C13 C12 H12 175.3 179.1
C12 C13 N6 H02 238.6 240.0
N6 C13 C01 O03 196.2 200.0
C15 C11 S1 H11 243.1 239.8
C10 S1 C11 O02 237.0 114.5
C10 S1 C11 O04 117.3 245.5
C11 S1 C10 H10 173.6 60.0
C11 S1 C10 H10A 55.9 300.0
S1 C11 C12 C13 79.2 62.2
C12 C11 S1 H11 117.8 120.2
S1 C11 C12 H12A 199.8 182.2
S1 C11 C12 H12 318.5 302.3
C15 C11 C12 S1 237.1 240.1
C15 C11 C12 H11 121.2 120.0
C10 S1 C11 C12 157.3 185.0
C12 C11 S1 O02 280.3 70.6
C12 C11 S1 O04 40.0 299.5
S1 C11 C12 H11 244.1 239.9
C13 C12 C11 H12A 239.4 240.1
C13 C12 C11 H12 120.7 120.0
C11 C12 C13 H02 293.0 299.2
H12A C12 C11 H12 241.3 239.9
C14 N6 C16 C27 311.6 66.1
N6 C16 C27 H16A 121.6 240.0
N6 C16 C27 H16 238.4 119.9
N28 C27 C16 H27 240.9 240.0
N28 C27 C16 H27A 119.2 119.9
C16 C27 N28 HN28 282.1 360.0
H16A C16 C27 H16 116.8 239.9
H27 C27 C16 H27A 238.3 239.9
N28 C27 C16 H16A 61.5 300.0
N28 C27 C16 H16 304.6 60.0
C16 C27 N28 H27 119.1 120.0
C16 C27 N28 H27A 240.8 240.0
C27 N28 C18 O4 1.3 0.0
H27 C27 N28 H27A 121.7 120.1
C16 C27 N28 C18 102.1 180.0
C21 C18 N28 O4 180.3 180.0
C26 C25 N8 C19 0.3 359.4
N12 C25 N8 C19 180.1 179.3
N11 C26 C20 N10 180.8 179.5
C20 C26 N11 C25 179.4 179.1
N11 C26 C25 N8 179.2 180.6
N11 C26 C25 N12 359.4 0.7
C25 C26 C20 N10 0.2 358.6
C20 C26 C25 N11 180.7 180.9
C19 N8 C25 C26 0.3 359.4
N12 C25 C26 N8 180.3 180.2
C26 C25 N12 HN12 119.2 151.6
C20 C26 N11 C21 181.1 191.7
N11 C21 C18 O4 184.0 186.0
C10 S1 O02 C11 122.5 250.0
C10 S1 O02 O04 242.2 125.0
O02 S1 C10 H10 50.7 174.5
O02 S1 C10 H10A 293.0 54.4
C11 S1 O02 O04 119.6 235.0
O02 S1 C11 H11 162.5 310.4
C10 S1 O04 C11 240.9 110.0
C10 S1 O04 O02 120.1 235.0
O04 S1 C10 H10 291.9 305.6
O04 S1 C10 H10A 174.1 185.5
C11 S1 O04 O02 239.2 125.0
O04 S1 C11 H11 282.2 179.3
N6 C13 C12 H02 121.6 120.0
C13 C12 C11 S1 79.2 62.2
C13 C12 C11 H11 195.1 182.4
C11 C12 C13 H12A 120.6 120.0
C11 C12 C13 H12 239.3 240.0
C12 C13 C01 O03 77.1 80.0
H12A C12 C13 H12 118.7 120.1
O01 C01 C13 O03 179.6 180.3
C13 C01 O03 H7 179.6 180.0
C13 C01 O01 O03 180.4 179.7
O01 C01 O03 H7 0.0 359.8
N28 C18 C21 O4 179.7 180.0
C18 C21 C22 C23 68.8 32.5
C18 C21 C22 C24 304.8 272.2
O4 C18 C21 C22 357.3 6.0
C26 C25 N8 N12 180.3 180.2
N8 C25 N12 HN12 299.4 331.8
C19 N8 C25 N12 180.1 179.3
C26 C25 N12 N8 179.7 179.8
C22 C21 C18 O4 357.3 6.0
C23 C22 C21 C24 123.9 120.2
C21 C22 C23 H23B 180.0 50.1
C21 C22 C23 H23A 300.0 170.1
C21 C22 C23 H23 60.0 290.0
C21 C22 C24 H24B 180.0 60.0
C21 C22 C24 H24 300.0 180.0
C21 C22 C24 H24A 60.0 300.0
N12 C22 C23 H23B 58.0 290.7
N12 C22 C23 H23A 178.0 50.7
N12 C22 C23 H23 298.0 170.7
N12 C22 C24 H24B 304.2 179.5
N12 C22 C24 H24 64.3 299.5
N12 C22 C24 H24A 184.3 59.5
C21 C22 C23 C24 235.2 239.7
C23 C22 C24 H24B 55.9 299.8
C23 C22 C24 H24 176.0 59.7
C23 C22 C24 H24A 295.9 179.8
H23B C23 C22 H23A 240.0 240.0
H23B C23 C22 H23 120.1 120.0
H23A C23 C22 H23 240.0 240.0
C21 C22 C24 C23 124.1 120.2
C24 C22 C23 H23B 304.8 170.3
C24 C22 C23 H23A 64.8 290.3
C24 C22 C23 H23 184.7 50.3
H24B C24 C22 H24 239.9 240.0
H24B C24 C22 H24A 119.9 120.0
H24 C24 C22 H24A 240.0 239.9
H10 C10 C1 H1 50.7 65.7
H10 C10 S1 C11 173.6 60.0
H10 C10 S1 O02 50.7 174.5
H10 C10 S1 O04 291.9 305.6
S1 C10 H10 H10A 243.6 240.0
H10A C10 C1 H1 168.4 185.7
H10A C10 S1 C11 55.9 300.0
H10A C10 S1 O02 293.0 54.4
H10A C10 S1 O04 174.1 185.5
S1 C10 H10A H10 116.4 120.1
C15 C11 H11 S1 116.7 120.2
C12 C11 H11 S1 240.4 239.9
H11 C11 S1 O02 162.5 310.4
H11 C11 S1 O04 282.2 179.3
H11 C11 C12 C13 195.1 182.4
H11 C11 C12 H12A 315.7 302.3
H11 C11 C12 H12 74.4 62.4
H12A C12 C11 S1 199.8 182.2
C11 C12 H12A C13 236.0 240.2
H12A C12 C11 H11 315.7 302.3
C11 C12 H12A H12 118.0 120.1
C13 C12 H12A H12 242.0 239.9
H12A C12 C13 H02 172.4 179.2
H12 C12 C11 S1 318.5 302.3
C11 C12 H12 C13 124.0 119.9
H12 C12 C11 H11 74.4 62.4
C11 C12 H12 H12A 242.0 239.9
C13 C12 H12 H12A 118.0 120.0
H12 C12 C13 H02 53.7 59.1
H02 C13 C12 H12A 172.4 179.2
H02 C13 C12 H12 53.7 59.1
H02 C13 C01 O03 320.2 320.1
C15 C14 H14 N6 236.8 240.0
C15 C14 H14 H14A 118.4 120.0
H14 C14 N6 C16 61.9 65.8
N6 C14 H14 H14A 241.6 240.1
C15 C14 H14A N6 123.2 120.0
C15 C14 H14A H14 241.6 240.0
H14A C14 N6 C16 302.9 305.9
N6 C14 H14A H14 118.4 119.9
H15A C15 C14 N6 71.7 180.8
H15A C15 C14 H14 192.2 300.8
H15A C15 C14 H14A 311.1 60.8
H15A C15 C11 S1 155.5 57.8
H15A C15 C11 H11 40.9 297.6
H15 C15 C14 N6 190.0 60.7
H15 C15 C14 H14 310.5 180.7
H15 C15 C14 H14A 69.5 300.7
H15 C15 C11 S1 37.2 177.8
H15 C15 C11 H11 282.5 57.7
N6 C16 H16A H16 115.0 240.0
H16A C16 C27 N28 61.5 300.0
C27 C16 H16A H16 245.1 120.0
H16A C16 C27 H27 180.6 59.9
H16A C16 C27 H27A 302.3 180.0
N6 C16 H16 H16A 245.0 120.0
H16 C16 C27 N28 304.6 60.0
C27 C16 H16 H16A 114.9 240.0
H16 C16 C27 H27 63.8 180.0
H16 C16 C27 H27A 185.5 300.1
C3 C2 H2 O2 232.6 237.3
H2 C2 O2 HO2 54.8 302.5
H2 C2 C1 H1 242.1 213.7
H23B C23 C22 C24 304.8 170.3
C22 C23 H23B H23A 120.0 120.0
C22 C23 H23B H23 240.0 240.0
H23A C23 H23B H23 120.0 120.0
H23A C23 C22 C24 64.8 290.3
C22 C23 H23A H23B 240.0 240.0
C22 C23 H23A H23 120.0 120.0
H23B C23 H23A H23 240.0 240.0
H23 C23 C22 C24 184.7 50.3
C22 C23 H23 H23B 120.1 120.0
C22 C23 H23 H23A 240.0 240.0
H23B C23 H23 H23A 119.9 120.0
C22 C24 H24B H24 120.0 120.0
C22 C24 H24B H24A 240.0 240.0
H24 C24 H24B H24A 120.0 120.0
C22 C24 H24 H24B 239.9 240.0
C22 C24 H24 H24A 120.0 120.1
H24B C24 H24 H24A 240.0 240.1
C22 C24 H24A H24B 120.0 120.0
C22 C24 H24A H24 240.0 239.9
H24B C24 H24A H24 120.0 119.9
C16 C27 H27 N28 244.9 240.1
H27 C27 C16 H16A 180.6 59.9
H27 C27 C16 H16 63.8 180.0
C16 C27 H27 H27A 122.4 120.1
N28 C27 H27 H27A 237.6 240.0
H27 C27 N28 HN28 162.9 240.0
C16 C27 H27A N28 115.1 119.9
H27A C27 C16 H16A 302.3 180.0
H27A C27 C16 H16 185.5 300.1
C16 C27 H27A H27 237.6 239.9
N28 C27 H27A H27 122.4 120.0
H27A C27 N28 HN28 41.3 120.0
H3 C3 C4 O1 270.6 265.4
H3 C3 C4 H4 153.5 146.5
H3 C3 C2 O2 211.2 237.3
H3 C3 C2 H2 337.7 360.0
C3 C4 H4 O1 117.1 115.4
H4 C4 C3 H3 153.5 146.5
N1 C4 H4 O1 245.7 237.7
N4 C8 H8 N5 180.0 180.0
H8 C8 N5 C9 179.8 180.0
HN10 N10 C19 N8 180.6 180.4
HN12 N12 C25 N8 299.4 331.8
HN28 N28 C27 H27 162.9 240.0
HN28 N28 C27 H27A 41.3 120.0
HN28 N28 C18 O4 181.2 180.0
HO2 O2 C2 H2 54.8 302.5
HO3 O3 C3 H3 53.5 57.3