PDB Chemical Component J1H

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J1H

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C17 C16 1.530 1.530
C17 N20 1.476 1.469
C16 N15 1.471 1.469
C25 C24 1.382 1.376
C25 C26 1.381 1.398
C24 C21 1.387 1.392
O28 C27 1.297 1.217
N15 C14 1.534 1.469
N15 C18 1.515 1.470
C27 C26 1.526 1.475
C27 N29 1.351 1.348
C26 C23 1.377 1.398
C21 N20 1.428 1.390
C21 C22 1.365 1.393
N20 C19 1.431 1.470
C14 C13 1.470 1.507
O32 S30 1.484 1.421
C12 C13 1.429 1.379
C12 C11 1.386 1.383
C13 C8 1.365 1.394
C23 C22 1.368 1.375
N29 S30 1.578 1.656
C19 C18 1.540 1.531
C39 C40 1.404 1.381
C39 C33 1.421 1.383
C11 C10 1.382 1.382
S30 C33 1.750 1.762
S30 O31 1.465 1.421
C54 C53 1.366 1.380
C54 C55 1.394 1.384
C53 C52 1.366 1.390
C40 C41 1.414 1.389
C50 S51 1.845 1.814
C50 C43 1.554 1.530
C33 C34 1.382 1.383
C8 C7 1.475 1.483
C8 C9 1.432 1.393
C6 C7 1.400 1.394
C6 C5 1.371 1.379
C10 C9 1.371 1.380
C55 C56 1.348 1.383
C52 S51 1.803 1.762
C52 C57 1.371 1.389
O59 C58 1.236 1.208
C43 N42 1.386 1.465
C43 C44 1.582 1.530
C7 C1 1.399 1.393
C5 C3 1.392 1.384
C41 N42 1.426 1.397
C41 C35 1.384 1.389
C45 C44 1.524 1.530
C45 N46 1.517 1.469
C34 C35 1.374 1.381
C49 N46 1.481 1.469
O60 C58 1.233 1.342
C58 C48 1.523 1.507
C56 C57 1.329 1.381
C35 N36 1.460 1.480
C1 C2 1.382 1.380
C3 C2 1.390 1.384
C3 CL4 1.770 1.736
N46 C48 1.444 1.469
N46 C47 1.483 1.469
N36 O37 1.281 1.218
N36 O38 1.209 1.218
C1 H1 1.080 1.080
C2 H2 1.080 1.080
C5 H3 1.080 1.080
C6 H4 1.080 1.080
C9 H5 1.080 1.080
C10 H6 1.079 1.080
C11 H7 1.081 1.080
C12 H8 1.080 1.081
C14 H9 1.100 1.090
C14 H10 1.100 1.090
C18 H12 1.100 1.090
C18 H13 1.100 1.090
C19 H14 1.100 1.090
C19 H15 1.100 1.090
C16 H16 1.100 1.090
C16 H17 1.100 1.090
C17 H18 1.100 1.091
C17 H19 1.100 1.090
C24 H20 1.079 1.080
C25 H21 1.080 1.081
C22 H22 1.080 1.080
C23 H23 1.080 1.080
N29 H24 1.001 0.969
C34 H25 1.080 1.080
C39 H26 1.080 1.080
C40 H27 1.080 1.080
N42 H28 1.000 0.970
C43 H29 1.100 1.090
C44 H30 1.100 1.090
C44 H31 1.100 1.091
C45 H32 1.100 1.090
C45 H33 1.100 1.090
C47 H34 1.100 1.090
C47 H35 1.100 1.090
C47 H36 1.100 1.090
C49 H37 1.100 1.090
C49 H38 1.099 1.091
C49 H39 1.100 1.089
C48 H40 1.100 1.090
C48 H41 1.100 1.090
O60 H42 0.950 0.967
C50 H43 1.100 1.090
C50 H44 1.100 1.090
C53 H45 1.080 1.080
C54 H46 1.080 1.080
C55 H47 1.080 1.079
C56 H48 1.080 1.080
C57 H49 1.080 1.080

Bond Angles for J1H

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C17 C16 H16 108.9 109.5
C17 C16 H17 109.0 109.5
N20 C17 H18 108.8 109.4
N20 C17 H19 108.8 109.5
C25 C24 H20 119.7 120.0
C25 C26 C23 119.7 119.8
C26 C25 H21 120.2 120.0
C24 C21 C22 118.6 120.1
O28 C27 N29 122.7 120.0
N15 C14 H9 109.7 109.4
N15 C14 H10 109.8 109.5
N15 C18 H12 109.0 109.5
N15 C18 H13 109.0 109.5
C27 N29 S30 124.0 120.0
C27 N29 H24 118.0 120.0
C26 C23 H23 120.0 120.0
C21 C22 H22 119.2 120.0
N20 C19 H14 109.1 109.5
N20 C19 H15 109.1 109.5
O32 S30 C33 107.9 106.4
C13 C12 H8 119.7 119.9
C12 C11 H7 119.5 119.9
C23 C22 H22 119.2 120.0
N29 S30 C33 107.2 107.2
N29 S30 O31 105.7 106.4
S30 N29 H24 118.0 120.0
C19 C18 H12 109.0 109.5
C19 C18 H13 109.0 109.5
C39 C40 C41 119.5 120.0
C40 C39 H26 120.6 120.0
C39 C40 H27 120.2 120.0
C11 C10 H6 120.7 120.0
O31 S30 C33 108.2 106.4
S30 C33 C34 118.2 120.0
C54 C53 H45 120.4 120.0
C54 C55 C56 118.9 120.1
C55 C54 H46 119.9 119.9
C54 C55 H47 120.5 119.9
C53 C52 C57 119.5 119.8
C40 C41 N42 121.6 120.1
C41 C40 H27 120.3 120.0
S51 C50 H43 108.1 109.5
S51 C50 H44 108.1 109.5
C50 C43 H29 108.8 109.5
C33 C34 C35 120.7 120.1
C33 C34 H25 119.6 119.9
C8 C9 H5 119.1 120.1
C7 C6 H4 119.0 120.0
C6 C5 H3 120.5 119.9
C10 C9 H5 119.1 120.1
C55 C56 C57 121.0 120.1
C56 C55 H47 120.5 120.0
C55 C56 H48 119.5 120.0
C52 C57 C56 121.2 119.9
C52 C57 H49 119.4 120.1
C43 N42 H28 106.0 120.1
C44 C43 H29 108.4 109.5
C43 C44 H30 109.2 109.5
C43 C44 H31 109.2 109.4
C7 C1 H1 120.4 120.1
C41 N42 H28 106.1 120.0
C45 C44 H30 109.2 109.5
C45 C44 H31 109.2 109.4
C45 N46 C48 109.4 109.5
C45 N46 C47 109.8 109.5
N46 C45 H32 108.7 109.5
N46 C45 H33 108.7 109.5
C34 C35 N36 115.5 120.1
C35 C34 H25 119.7 120.0
C49 N46 C48 109.4 109.5
C58 C48 H40 110.0 109.4
C58 C48 H41 110.0 109.4
C57 C56 H48 119.5 119.9
C56 C57 H49 119.4 120.1
C35 N36 O37 120.7 120.0
C35 N36 O38 118.3 120.0
C2 C1 H1 120.4 120.1
C1 C2 H2 119.4 119.9
C3 C2 H2 119.3 120.0
C47 N46 C48 109.7 109.5
N46 C48 H40 110.0 109.5
N46 C48 H41 110.0 109.5
N46 C47 H34 109.5 109.5
N46 C47 H35 109.5 109.5
N46 C47 H36 109.5 109.5
O38 N36 O37 120.9 120.0
H9 C14 H10 109.5 109.5
H12 C18 H13 109.5 109.5
H14 C19 H15 109.5 109.5
H16 C16 H17 109.5 109.5
H18 C17 H19 109.5 109.5
H30 C44 H31 109.4 109.5
H32 C45 H33 109.5 109.5
H34 C47 H35 109.5 109.4
H34 C47 H36 109.5 109.5
H35 C47 H36 109.5 109.5
H37 C49 H38 109.5 109.4
H37 C49 H39 109.5 109.5
H38 C49 H39 109.4 109.5
H40 C48 H41 109.5 109.5
H43 C50 H44 109.5 109.4

Torsion Angles for J1H

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H16 C16 C17 H17 240.6 120.0
N20 C17 C16 H16 69.8 181.6
N20 C17 C16 H17 189.2 61.6
C17 N20 C19 H14 76.0 180.8
C17 N20 C19 H15 195.6 60.7
H18 C17 N20 H19 119.2 120.0
C16 N15 C14 H9 304.1 306.2
C16 N15 C14 H10 64.5 186.2
C16 N15 C18 H12 58.8 60.7
C16 N15 C18 H13 178.2 180.7
C25 C24 C21 C22 0.1 0.3
C26 C25 C24 H20 179.9 180.1
C25 C26 C23 H23 180.0 180.2
C24 C21 C22 H22 180.0 179.7
O28 C27 N29 S30 2.6 360.0
O28 C27 N29 H24 182.6 179.9
H9 C14 N15 H10 239.7 120.0
C18 N15 C14 H9 61.9 70.0
C18 N15 C14 H10 182.2 310.0
C19 C18 N15 H12 239.7 240.0
C19 C18 N15 H13 120.3 120.0
H12 C18 N15 H13 240.6 240.0
C27 C26 C25 H21 0.0 0.0
C27 C26 C23 H23 360.0 360.0
C27 N29 S30 C33 62.3 65.0
C27 N29 S30 O31 177.5 178.5
S30 N29 C27 H24 180.0 180.1
C23 C26 C25 H21 180.1 179.7
C26 C23 C22 H22 180.0 179.9
C21 N20 C17 H18 75.1 63.2
C21 N20 C17 H19 315.9 303.2
C21 N20 C19 H14 283.6 56.8
C21 N20 C19 H15 43.2 296.8
C23 C22 C21 H22 180.0 180.1
N20 C19 C18 H12 292.4 298.4
N20 C19 C18 H13 173.0 178.3
H14 C19 N20 H15 240.4 120.1
C14 C13 C12 H8 360.0 359.4
N29 S30 O32 C33 118.1 114.1
O32 S30 N29 H24 123.8 131.5
O31 S30 O32 C33 239.2 237.1
O32 S30 C33 C34 204.1 203.6
C13 C12 C11 H7 180.0 179.7
C12 C11 C10 H6 180.0 180.0
C13 C8 C9 H5 180.1 180.2
C25 C26 C23 C22 360.0 0.4
C21 C22 C23 H22 180.0 179.9
C27 N29 S30 H24 180.0 179.9
O32 S30 N29 C33 241.5 246.4
O31 S30 N29 C33 115.3 113.5
N29 S30 C33 C34 82.5 90.0
N15 C18 C19 H12 120.3 120.0
N15 C18 C19 H13 239.7 240.0
H12 C18 C19 H13 119.4 120.1
C39 C40 C41 N42 180.0 180.0
C41 C40 C39 H27 180.0 180.0
C39 C33 C34 H25 180.0 180.3
C11 C10 C9 H5 179.9 180.1
N29 S30 C33 O31 113.6 113.5
C33 S30 N29 H24 242.3 245.1
S30 C33 C34 C35 180.1 180.0
S30 C33 C34 H25 0.1 359.9
O32 S30 O31 C33 120.6 122.9
N29 S30 O31 C33 245.4 245.9
O31 S30 N29 H24 357.6 358.6
O31 S30 C33 C34 328.9 336.5
C54 C53 C52 C57 360.0 0.2
C55 C54 C53 H45 180.0 180.0
C54 C55 C56 C57 0.0 359.7
C56 C55 C54 H47 180.0 180.0
C54 C55 C56 H48 180.0 180.0
C53 C52 C57 C56 0.0 359.5
C53 C52 C57 H49 180.0 179.7
C41 C40 C39 H26 180.0 180.0
C39 C40 C41 H27 180.0 180.0
C40 C41 N42 H28 241.8 187.8
S51 C50 C43 H29 179.3 60.0
H43 C50 S51 H44 241.6 120.0
C50 C43 N42 H28 193.2 265.0
C44 C43 C50 H29 118.8 120.0
C50 C43 C44 H30 55.1 305.1
C50 C43 C44 H31 174.7 65.0
C33 C34 C35 N36 180.0 180.0
C35 C34 C33 H25 180.0 180.1
C8 C7 C6 H4 359.9 359.5
C8 C7 C1 H1 0.2 0.2
C10 C9 C8 H5 180.0 180.2
C7 C6 C5 H3 180.0 179.8
C6 C7 C1 H1 180.0 179.8
C8 C9 C10 H5 180.0 179.8
C56 C55 C54 H46 179.9 180.0
C54 C55 C56 H47 180.0 180.0
C52 C57 C56 C55 360.0 0.6
C57 C56 C55 H48 180.0 179.8
C55 C56 C57 H49 180.0 180.3
C52 S51 C50 H43 31.0 60.0
C52 S51 C50 H44 149.4 300.0
C55 C56 C57 C52 360.0 0.6
C52 C57 C56 H48 180.0 180.3
C56 C57 C52 H49 180.0 179.7
O59 C58 C48 H40 190.1 243.7
O59 C58 C48 H41 310.8 123.7
C41 N42 C43 H28 238.2 180.0
C50 C43 C44 H29 241.0 240.0
C44 C43 N42 H28 313.6 25.0
C45 C44 C43 H30 239.8 239.9
C45 C44 C43 H31 120.2 120.0
H30 C44 C43 H31 240.4 240.0
C2 C1 C7 H1 180.0 179.7
C7 C1 C2 H2 180.0 180.3
C5 C3 C2 H2 180.0 179.9
N42 C41 C40 H27 359.9 360.0
C43 N42 C41 H28 121.8 180.0
C41 C35 C34 H25 179.9 180.0
C45 C44 C43 H29 53.9 305.0
C43 C44 C45 H30 120.2 120.0
C43 C44 C45 H31 239.8 240.0
H30 C44 C45 H31 119.7 120.0
N46 C45 C44 H30 67.0 60.0
N46 C45 C44 H31 307.3 300.0
C49 N46 C45 C48 119.6 240.0
C47 N46 C45 C48 239.6 120.0
C45 N46 C48 H40 284.2 299.6
C45 N46 C48 H41 163.6 59.6
C45 N46 C47 H34 180.0 65.1
C45 N46 C47 H35 300.0 185.1
C45 N46 C47 H36 60.0 305.1
H32 C45 N46 H33 119.1 120.0
C33 C34 C35 H25 180.0 179.9
C34 C35 N36 O37 181.8 37.3
C34 C35 N36 O38 1.9 217.3
C45 N46 C49 C48 240.4 120.0
C49 N46 C45 H32 73.4 300.0
C49 N46 C45 H33 314.3 180.0
C47 N46 C49 C48 120.2 240.0
C49 N46 C48 H40 164.8 59.6
C49 N46 C48 H41 44.1 179.6
C49 N46 C47 H34 299.7 305.1
C49 N46 C47 H35 59.7 65.1
C49 N46 C47 H36 179.7 185.1
O60 C58 C48 H40 10.1 63.6
O60 C58 C48 H41 130.8 303.7
N46 C48 C58 H40 240.3 120.0
N46 C48 C58 H41 119.7 240.0
H40 C48 C58 H41 239.3 120.0
C57 C56 C55 H47 180.1 179.7
C55 C56 C57 H48 180.0 180.2
C52 C57 C56 H49 180.0 180.3
N36 C35 C34 H25 0.0 0.1
O38 N36 C35 O37 180.1 180.1
C7 C1 C2 H1 180.0 180.3
C3 C2 C1 H2 180.0 179.9
C3 C2 C1 H1 180.0 180.0
C1 C2 C3 H2 180.0 180.1
CL4 C3 C2 H2 360.0 359.9
C45 N46 C48 C47 239.5 120.0
C48 N46 C45 H32 313.8 60.0
C48 N46 C45 H33 194.7 300.0
C58 C48 N46 H40 119.7 240.0
C58 C48 N46 H41 240.3 120.0
C48 N46 C47 H34 59.8 185.1
C48 N46 C47 H35 179.8 305.1
C48 N46 C47 H36 299.8 65.1
H40 C48 N46 H41 120.7 240.0
C45 N46 C47 C48 120.2 240.0
C47 N46 C45 H32 193.4 180.0
C47 N46 C45 H33 74.3 60.0
C49 N46 C47 C48 239.9 120.0
C47 N46 C48 H40 44.7 179.6
C47 N46 C48 H41 284.0 299.6
H34 C47 N46 H35 240.0 240.0
H34 C47 N46 H36 120.0 120.0
H35 C47 N46 H36 240.0 240.0
C35 N36 O37 O38 180.1 180.1
C35 N36 O38 O37 179.9 179.9
H1 C1 C2 H2 360.0 0.0
H2 C2 C1 H1 360.0 0.0
H4 C6 C5 H3 360.0 0.3
H6 C10 C9 H5 360.0 0.1
H7 C11 C10 H6 360.0 0.0
H8 C12 C11 H7 0.0 0.3
N15 C14 H9 H10 120.5 240.0
N15 C14 H10 H9 239.5 120.0
N15 C18 H12 H13 119.1 120.0
C19 C18 H12 H13 240.9 239.9
N15 C18 H13 H12 240.9 240.0
C19 C18 H13 H12 119.1 120.1
N20 C19 H14 H15 119.4 239.9
H14 C19 C18 H12 172.2 58.4
H14 C19 C18 H13 52.8 298.3
N20 C19 H15 H14 240.6 120.1
H15 C19 C18 H12 52.6 178.4
H15 C19 C18 H13 293.2 58.4
C17 C16 H16 H17 119.1 240.0
C17 C16 H17 H16 241.0 120.0
H18 C17 C16 H16 190.2 301.5
H18 C17 C16 H17 309.6 181.5
N20 C17 H18 H19 241.2 240.0
H19 C17 C16 H16 309.5 61.6
H19 C17 C16 H17 68.8 301.6
N20 C17 H19 H18 118.8 120.0
H20 C24 C21 C22 180.1 180.2
H21 C25 C24 H20 359.9 0.0
H21 C25 C26 C23 180.1 179.7
H23 C23 C22 H22 360.0 0.1
C27 N29 H24 S30 180.0 180.1
H24 N29 S30 C33 242.3 245.1
H24 N29 S30 O31 357.6 358.6
C33 C34 H25 C35 180.0 180.1
H25 C34 C35 N36 0.0 0.1
H26 C39 C40 C41 180.0 180.0
H26 C39 C40 H27 0.0 0.0
C39 C40 H27 C41 180.0 180.0
H27 C40 C39 H26 0.0 0.0
H27 C40 C41 N42 359.9 360.0
H29 C43 N42 H28 71.2 145.0
H29 C43 C44 H30 174.1 65.0
H29 C43 C44 H31 293.7 185.0
H30 C44 C43 H29 174.1 65.0
C43 C44 H30 H31 119.5 120.0
C45 C44 H30 H31 240.5 240.0
H31 C44 C43 H29 293.7 185.0
C43 C44 H31 H30 240.5 240.0
C45 C44 H31 H30 119.5 120.0
H32 C45 C44 H30 187.5 180.0
H32 C45 C44 H31 67.8 60.0
H32 C45 N46 C48 313.8 60.0
H32 C45 N46 C47 193.4 180.0
N46 C45 H32 H33 241.4 240.0
H33 C45 C44 H30 306.5 300.0
H33 C45 C44 H31 186.9 180.0
H33 C45 N46 C48 194.7 300.0
H33 C45 N46 C47 74.3 60.0
N46 C45 H33 H32 118.6 120.0
H34 C47 N46 C48 59.8 185.1
N46 C47 H34 H35 120.0 120.0
N46 C47 H34 H36 240.0 240.0
H35 C47 H34 H36 120.0 120.0
H35 C47 N46 C48 179.8 305.1
N46 C47 H35 H34 240.0 240.0
N46 C47 H35 H36 120.0 120.0
H34 C47 H35 H36 240.0 240.0
H36 C47 N46 C48 299.8 65.1
N46 C47 H36 H34 120.0 120.0
N46 C47 H36 H35 240.0 240.0
H34 C47 H36 H35 120.0 119.9
H37 C49 N46 C48 299.6 307.2
H38 C49 H37 H39 120.0 120.0
H38 C49 N46 C48 59.6 67.1
H37 C49 H38 H39 240.0 240.0
H39 C49 N46 C48 179.6 187.1
H37 C49 H39 H38 120.0 119.9
C58 C48 H40 H41 120.9 240.1
N46 C48 H40 H41 239.1 120.0
C58 C48 H41 H40 239.0 120.0
N46 C48 H41 H40 120.9 240.0
S51 C50 H43 H44 117.5 240.0
H43 C50 C43 H29 58.5 180.0
S51 C50 H44 H43 242.5 120.0
H44 C50 C43 H29 300.1 300.0
H45 C53 C52 C57 180.0 180.2
H46 C54 C53 H45 0.1 360.0
H46 C54 C55 C56 179.9 180.0
H46 C54 C55 H47 359.9 0.0
C54 C55 H47 C56 180.0 180.0
H47 C55 C54 H46 359.9 0.0
H47 C55 C56 C57 180.1 179.7
H47 C55 C56 H48 0.0 360.0
C55 C56 H48 C57 180.0 179.8
H48 C56 C55 H47 0.0 360.0
H48 C56 C57 H49 0.0 0.0
C52 C57 H49 C56 180.0 179.7
H49 C57 C56 H48 0.0 0.0