Atom Nomenclature for J1H

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for J1H

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
CL4 CL1
C5 C4
C6 C5
C7 C6
C8 C7
C9 C8
C10 C9
C11 C10
C12 C11
C13 C12
C14 C13
N15 N1
C18 C14
C19 C15
C16 C16
C17 C17
N20 N2
C21 C18
C24 C19
C25 C20
C22 C21
C23 C22
C26 C23
C27 C24
O28 O1
N29 N3
S30 S1
O31 O2
O32 O3
C33 C25
C34 C26
C35 C27
N36 N4
O38 O4
O37 O5
C39 C28
C40 C29
C41 C30
N42 N5
C43 C31
C44 C32
C45 C33
N46 N6
C47 C34
C49 C35
C48 C36
C58 C37
O60 O6
O59 O7
C50 C38
S51 S2
C52 C39
C53 C40
C54 C41
C55 C42
C56 C43
C57 C44
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49