PDB Chemical Component J1B

Ideal Model

Chemical Description

Name 5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine
Formula C26 H38 N12 O4 S
Formal charge 0
Molecular weight 614.723 g/mol
Component type NON-POLYMER

Chemical features

Atom count 81
Chiral atom count 4
Chiral atoms C1 C2 C3 C4
Bond count 86
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine
Systematic name (OpenEye OEToolkits) 6-[[2-[4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]piperidin-1-yl]ethylamino]methyl]-2-azanyl-7,7-dimethyl-3,8-dihydropteridin-4-one

Chemical Descriptors

Stereo SMILES (CACTVS) CC1(C)NC2=C(N=C1CNCCN3CCC(CC3)SC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N
SMILES (CACTVS) CC1(C)NC2=C(N=C1CNCCN3CCC(CC3)SC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N
Stereo SMILES (OpenEye) CC1(C(=NC2=C(N1)N=C(NC2=O)N)CNCCN3CCC(CC3)SC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)C
InChI descriptor InChI=1S/C26H38N12O4S/c1-26(2)15(33-17-21(36-26)34-25(28)35-23(17)41)9-29-5-8-37-6-3-13(4-7-37)43-10-14-18(39)19(40)24(42-14)38-12-32-16-20(27)30-11-31-22(16)38/h11-14,18-19,24,29,39-40H,3-10H2,1-2H3,(H2,27,30,31)(H4,28,34,35,36,41)/t14-,18-,19-,24-/m1/s1
InChIKey descriptor SQZWJXDKQKNJEE-KYKAGHOCSA-N

Status Information

Last modified 2011-12-30
Created 2011-11-11
Release status REL
Model PDB code 3UDE
Processing site RCSB