PDB Chemical Component J1A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for J1A

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C1 1.555 1.541
C10 C1 1.542 1.531
C1 O1 1.413 1.437
C1 H1 1.101 1.090
C4 N1 1.420 1.465
N1 C9 1.394 1.373
N1 C5 1.382 1.362
O1 C4 1.414 1.444
C10 S1 1.809 1.814
S1 C11 1.846 1.815
O2 C2 1.381 1.429
C2 C3 1.569 1.549
C2 H2 1.100 1.090
C5 N2 1.318 1.301
C6 N2 1.363 1.354
O2 HO2 0.950 0.966
O3 C3 1.386 1.428
C3 C4 1.565 1.550
C3 H3 1.100 1.091
C7 N3 1.352 1.384
N3 HN3 1.000 0.970
N3 HN3A 1.000 0.969
O3 HO3 0.949 0.968
C4 H4 1.100 1.091
C8 N4 1.370 1.320
N4 C7 1.391 1.329
O4 C20 1.211 1.216
C5 H5 1.080 1.080
N5 C9 1.358 1.329
N5 C8 1.355 1.316
C9 C6 1.418 1.406
C6 C7 1.393 1.405
C13 N6 1.499 1.469
N6 C14 1.492 1.468
N6 C16 1.485 1.469
C8 H8 1.081 1.081
C25 N8 1.392 1.346
N8 C19 1.371 1.310
C19 N9 1.379 1.371
N9 HN9 1.000 0.970
N9 HN9A 1.000 0.970
C10 H10 1.100 1.089
C10 H10A 1.100 1.090
C20 N10 1.433 1.353
N10 C19 1.403 1.363
N10 HN10 1.000 0.970
C12 C11 1.533 1.532
C11 C15 1.538 1.531
C11 H11 1.100 1.090
C21 N11 1.373 1.318
N11 C26 1.381 1.326
C12 C13 1.543 1.530
C12 H12 1.100 1.090
C12 H12A 1.100 1.090
C22 N12 1.327 1.318
N12 C25 1.403 1.334
C13 H13 1.100 1.090
C13 H13A 1.100 1.090
C15 C14 1.523 1.531
C14 H14 1.100 1.089
C14 H14A 1.100 1.090
C15 H15 1.100 1.089
C15 H15A 1.100 1.090
C16 C27 1.541 1.531
C16 H16 1.100 1.090
C16 H16A 1.100 1.090
N28 C18 1.450 1.469
C18 C21 1.517 1.507
C18 H18 1.100 1.090
C18 H18A 1.100 1.090
C26 C20 1.468 1.473
C21 C22 1.421 1.391
C22 H22 1.080 1.079
C26 C25 1.427 1.413
N28 C27 1.487 1.469
C27 H27 1.100 1.089
C27 H27A 1.100 1.090
N28 HN28 1.000 1.010

Bond Angles for J1A

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H1 106.7 109.9
C10 C1 H1 98.3 109.9
O1 C1 H1 115.5 109.9
C1 O1 C4 104.2 107.0
C4 N1 C9 128.7 126.2
C4 N1 C5 123.9 126.3
C5 N1 C9 107.4 107.4
N1 C9 N5 131.3 134.9
N1 C9 C6 103.2 106.0
N1 C5 N2 112.3 110.0
N1 C5 H5 123.8 125.0
O1 C4 C3 106.5 103.5
O1 C4 H4 116.4 110.6
C10 S1 C11 106.4 103.0
S1 C11 C15 108.5 109.5
S1 C11 H11 110.4 109.5
O2 C2 C3 107.7 110.4
O2 C2 H2 106.3 110.6
C3 C2 H2 115.8 110.5
C2 C3 C4 101.0 102.1
C2 C3 H3 112.8 110.9
O3 C3 C4 112.6 110.9
O3 C3 H3 101.3 110.8
C4 C3 H3 115.0 110.9
C3 C4 H4 105.8 110.6
C7 N3 HN3 109.5 119.9
C7 N3 HN3A 109.5 120.1
HN3 N3 HN3A 109.4 120.0
N4 C7 C6 118.8 118.4
O4 C20 N10 117.8 121.3
C8 N5 C9 111.5 120.6
N5 C9 C6 125.5 119.1
N5 C8 H8 115.4 118.8
C13 N6 C14 114.2 111.2
C13 N6 C16 114.6 111.0
C14 N6 C16 112.7 111.0
N6 C14 H14 108.0 109.5
N6 C14 H14A 108.1 109.5
N6 C16 C27 106.0 109.5
N6 C16 H16 110.7 109.5
N6 C16 H16A 110.7 109.5
N8 C19 N9 116.4 118.4
N8 C19 N10 125.0 123.1
C19 N9 HN9 120.0 120.1
C19 N9 HN9A 120.0 120.0
HN9 N9 HN9A 120.0 120.0
H10 C10 H10A 112.7 109.5
C20 N10 HN10 119.5 119.8
C19 N10 HN10 119.5 119.8
C12 C11 C15 110.6 109.2
C12 C11 H11 108.3 109.6
C15 C11 H11 109.5 109.6
C11 C15 C14 109.3 109.2
C11 C15 H15 109.6 109.5
C11 C15 H15A 109.5 109.5
C21 N11 C26 114.4 119.6
N11 C26 C20 118.0 121.8
N11 C26 C25 122.4 120.2
C13 C12 H12 109.5 109.5
C13 C12 H12A 109.5 109.5
C12 C13 H13 107.3 109.5
C12 C13 H13A 107.3 109.5
H12 C12 H12A 109.4 109.6
C22 N12 C25 115.5 119.7
H13 C13 H13A 111.5 109.5
C15 C14 H14 108.1 109.5
C15 C14 H14A 108.1 109.4
H14 C14 H14A 110.8 109.5
H15 C15 H15A 109.4 109.6
C27 C16 H16 110.6 109.5
C27 C16 H16A 110.7 109.5
C16 C27 H27 110.9 109.5
C16 C27 H27A 110.9 109.5
H16 C16 H16A 108.2 109.5
N28 C18 H18 107.7 109.5
N28 C18 H18A 107.7 109.5
C21 C18 H18 107.6 109.4
C21 C18 H18A 107.6 109.5
C18 C21 C22 113.7 119.7
H18 C18 H18A 111.2 109.4
C21 C22 H22 118.3 119.7
N28 C27 H27 110.9 109.5
N28 C27 H27A 110.9 109.5
H27 C27 H27A 108.0 109.5

Torsion Angles for J1A

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C10 C1 C2 H1 110.3 121.1
O1 C1 C2 H1 237.2 240.5
C2 C1 O1 C4 44.8 26.5
C2 C1 C10 H1 245.2 238.9
O1 C1 C10 H1 121.9 121.0
C2 C1 O1 H1 117.0 119.5
C10 C1 O1 H1 248.5 239.0
C1 O1 C4 C3 316.3 319.9
C1 O1 C4 H4 73.9 78.4
H1 C1 O1 C4 287.9 267.1
C1 O1 C4 N1 192.0 201.5
C5 N1 C4 C9 182.7 180.3
C4 N1 C9 N5 1.9 0.2
C4 N1 C9 C6 182.1 180.2
C4 N1 C5 N2 178.5 179.8
C4 N1 C5 H5 358.6 359.7
C4 N1 C9 C5 182.3 180.2
C9 N1 C5 N2 0.7 0.0
C9 N1 C5 H5 180.7 180.0
C8 N5 C9 N1 180.0 180.0
N5 C9 N1 C6 179.9 180.0
C4 N1 C5 C9 177.8 179.8
C5 N1 C9 N5 179.6 180.0
C5 N1 C9 C6 359.8 360.0
C4 O1 C1 H1 287.9 267.1
O1 C4 N1 C9 66.0 203.5
O1 C4 N1 C5 248.6 23.8
C2 C3 C4 O1 23.9 37.0
O3 C3 C4 O1 146.7 155.2
O1 C4 C3 H3 262.1 278.8
C3 C4 O1 H4 242.4 241.6
S1 C10 C1 H1 173.6 305.4
C10 S1 C11 C15 253.9 185.0
C10 S1 C11 H11 13.8 305.2
C12 C11 S1 C15 239.1 240.3
C12 C11 S1 H11 119.2 120.1
C15 C11 S1 H11 240.1 239.8
S1 C11 C15 C14 178.5 182.4
S1 C11 C15 H15 298.5 302.4
S1 C11 C15 H15A 58.5 62.5
O2 C2 C1 H1 338.2 358.8
C3 C2 O2 H2 124.7 122.6
O2 C2 C3 C4 123.0 97.8
O2 C2 C3 H3 246.3 216.0
C3 C2 C1 H1 94.6 117.4
O1 C4 C3 C2 23.9 37.0
O2 C2 C3 H2 241.2 237.3
O3 C3 C2 C4 238.6 241.8
O3 C3 C2 H3 115.4 123.6
C4 C3 C2 H3 236.7 241.8
C2 C3 C4 H4 259.4 278.5
H2 C2 C1 H1 219.0 236.1
O2 C2 H2 C3 119.6 122.6
H2 C2 C3 C4 241.8 220.5
H2 C2 C3 H3 5.1 338.7
N2 C5 N1 C9 0.7 0.0
N1 C5 N2 H5 180.0 180.0
N1 C9 C6 N2 359.8 0.1
HO2 O2 C2 C3 66.1 65.3
HO2 O2 C2 H2 301.4 302.6
O1 C4 C3 O3 146.7 155.2
O3 C3 C2 H2 120.4 102.2
C2 C3 O3 C4 114.8 112.7
C2 C3 O3 H3 238.1 236.4
C4 C3 O3 H3 123.3 123.7
O3 C3 C4 H4 22.3 36.7
C3 C4 N1 C9 308.1 89.5
C3 C4 N1 C5 130.7 269.8
O1 C4 C3 H4 124.5 118.5
C4 C3 C2 H2 241.8 220.5
C2 C3 C4 H3 121.8 118.2
O3 C3 C4 H3 244.6 236.4
H3 C3 C2 H2 5.1 338.7
C2 C3 H3 C4 244.9 247.3
O3 C3 H3 C4 121.7 123.7
H3 C3 C4 H4 137.6 160.4
HN3 N3 C7 HN3A 240.0 180.0
C7 N3 HN3 HN3A 120.0 180.0
C7 N3 HN3A HN3 240.0 180.0
HO3 O3 C3 C4 65.2 185.8
HO3 O3 C3 H3 301.8 62.1
H4 C4 N1 C9 190.4 326.5
H4 C4 N1 C5 13.1 146.8
O1 C4 H4 C3 242.0 246.0
H4 C4 C3 H3 137.6 160.4
N4 C7 N3 HN3 0.0 360.0
N4 C7 N3 HN3A 120.0 180.0
O4 C20 N10 HN10 0.4 360.0
N11 C26 C20 O4 359.7 360.0
H5 C5 N1 C9 180.7 180.0
N1 C5 H5 N2 180.0 180.0
N1 C9 N5 C6 180.1 180.0
C9 N5 C8 H8 179.7 180.1
N1 C9 N5 C8 180.0 180.0
C8 N5 C9 C6 359.8 0.0
N1 C9 C6 N5 179.9 180.0
N1 C9 C6 C7 180.0 180.0
C6 C7 N3 HN3 181.6 180.0
C6 C7 N3 HN3A 301.6 0.0
N5 C9 C6 C7 0.1 359.9
C14 N6 C13 C16 132.1 124.1
C13 N6 C14 H14 74.0 58.3
C13 N6 C14 H14A 194.0 178.3
C13 N6 C16 C27 259.8 294.2
C13 N6 C16 H16 19.8 54.2
C13 N6 C16 H16A 139.8 174.2
C13 N6 C14 C16 227.0 235.9
C14 N6 C16 C27 127.0 170.0
C14 N6 C16 H16 247.0 290.0
C14 N6 C16 H16A 7.0 50.0
C11 C15 C14 N6 55.1 59.3
C15 C14 N6 H14 240.0 240.0
C15 C14 N6 H14A 120.0 119.9
H14 C14 N6 H14A 240.0 239.9
C13 N6 C16 C14 132.9 124.2
C16 N6 C14 H14 207.0 182.3
C16 N6 C14 H14A 327.0 302.4
C27 C16 N6 H16 240.0 240.0
C27 C16 N6 H16A 120.0 120.0
N6 C16 C27 H27 202.3 300.0
N6 C16 C27 H27A 322.2 60.0
H16 C16 N6 H16A 240.0 240.0
H8 C8 N5 C9 179.7 180.1
N8 C19 N9 HN9 360.0 360.0
N8 C19 N9 HN9A 180.0 180.0
N8 C19 N10 HN10 179.5 180.0
N8 C19 N9 N10 180.0 180.0
HN9 N9 C19 HN9A 180.0 180.0
C19 N9 HN9 HN9A 180.0 180.0
C19 N9 HN9A HN9 180.0 180.0
H10 C10 C1 H1 293.6 65.4
H10 C10 S1 C11 355.4 60.0
H10A C10 C1 H1 53.6 185.5
H10A C10 S1 C11 235.4 300.0
C19 N10 C20 HN10 180.0 180.0
O4 C20 N10 C19 180.4 180.0
N8 C19 N10 N9 180.0 180.0
N10 C19 N9 HN9 179.9 180.0
N10 C19 N9 HN9A 360.0 0.1
C20 N10 C19 HN10 180.0 180.0
S1 C11 C12 C15 119.6 119.9
S1 C11 C12 H11 239.5 239.9
C15 C11 C12 H11 119.9 120.0
C12 C11 C15 C14 298.8 302.3
C12 C11 C15 H15 58.8 62.2
C12 C11 C15 H15A 178.8 182.4
S1 C11 C15 H11 120.5 120.1
C12 C11 C15 H11 240.8 240.0
C11 C15 C14 H14 295.1 299.2
C11 C15 C14 H14A 175.1 179.2
H15 C15 C11 H15A 240.0 239.8
S1 C11 H11 C15 240.7 239.9
C12 C11 H11 C15 120.6 119.8
H11 C11 C15 C14 58.0 62.3
H11 C11 C15 H15 178.0 182.2
H11 C11 C15 H15A 298.0 302.4
C21 N11 C26 C20 180.8 180.0
C21 N11 C26 C25 0.5 0.0
C12 C13 N6 C14 43.0 61.7
C12 C13 N6 C16 270.8 297.7
C13 C12 C11 C15 57.0 57.7
C13 C12 C11 H11 297.1 297.7
H12 C12 C13 H12A 120.0 120.2
H13 C13 C12 H13A 120.0 120.0
H12 C12 C11 C15 177.0 177.6
H12 C12 C11 H11 57.1 57.7
C13 C12 H12 H12A 239.9 239.9
H12 C12 C13 H13 71.8 60.9
H12 C12 C13 H13A 311.8 300.9
H12A C12 C11 C15 297.0 297.8
H12A C12 C11 H11 177.1 177.8
C13 C12 H12A H12 120.1 120.1
H12A C12 C13 H13 311.8 300.7
H12A C12 C13 H13A 191.9 180.7
N11 C26 C25 N12 0.2 360.0
H13 C13 N6 C14 162.9 181.8
H13 C13 N6 C16 30.8 57.7
H13 C13 C12 H12 71.8 60.9
H13 C13 C12 H12A 311.8 300.7
C12 C13 H13 H13A 242.7 240.0
H13A C13 N6 C14 282.9 301.8
H13A C13 N6 C16 150.8 177.7
H13A C13 C12 H12 311.8 300.9
H13A C13 C12 H12A 191.9 180.7
C12 C13 H13A H13 117.3 120.0
C15 C14 N6 C16 87.0 62.3
N6 C14 C15 H14 120.0 120.0
N6 C14 C15 H14A 240.0 240.1
C14 C15 C11 H11 58.0 62.3
C11 C15 C14 H15 120.0 120.0
C11 C15 C14 H15A 240.0 240.1
H14 C14 C15 H14A 120.0 120.0
H14 C14 N6 C16 207.0 182.3
N6 C14 H14 H14A 118.2 120.0
C15 C14 H14 H14A 241.8 240.1
H14A C14 N6 C16 327.0 302.4
N6 C14 H14A H14 241.8 239.9
C15 C14 H14A H14 118.2 120.0
H15 C15 C11 H11 178.0 182.2
C11 C15 H15 C14 240.1 240.2
C11 C15 H15 H15A 120.1 120.1
H15 C15 C14 H14 175.0 179.3
H15 C15 C14 H14A 55.0 59.2
H15A C15 C11 H11 298.0 302.4
C11 C15 H15A C14 119.9 119.7
C11 C15 H15A H15 239.9 239.8
H15A C15 C14 H14 55.0 59.1
H15A C15 C14 H14A 295.1 299.1
N6 C16 C27 H16 120.0 120.0
N6 C16 C27 H16A 240.0 240.0
H16 C16 C27 H16A 120.0 120.0
N28 C27 C16 H27 240.0 240.0
N28 C27 C16 H27A 120.0 120.0
H27 C27 C16 H27A 240.0 240.0
N6 C16 H16 C27 242.9 240.0
N6 C16 H16 H16A 121.5 120.0
C27 C16 H16 H16A 238.6 240.0
H16 C16 C27 H27 82.2 180.0
H16 C16 C27 H27A 202.2 300.0
N6 C16 H16A C27 117.2 120.0
N6 C16 H16A H16 238.5 240.0
C27 C16 H16A H16 121.4 120.0
H16A C16 C27 H27 322.3 60.0
H16A C16 C27 H27A 82.3 180.0
C21 C18 N28 H18 240.0 120.0
C21 C18 N28 H18A 120.0 240.0
H18 C18 N28 H18A 240.0 120.0
C18 C21 N11 C26 179.7 180.0
N28 C18 C21 H18 120.0 240.0
N28 C18 C21 H18A 240.0 120.0
H18 C18 C21 H18A 120.0 240.0
C18 C21 C22 H22 0.5 359.9
N28 C18 H18 H18A 117.8 240.0
C21 C18 H18 H18A 242.3 120.0
H18 C18 C21 C22 76.4 215.1
N28 C18 H18A H18 242.2 120.0
C21 C18 H18A H18 117.7 240.1
H18A C18 C21 C22 316.4 335.0
C26 C20 N10 HN10 180.2 180.0
N11 C26 C20 C25 179.7 180.0
C22 C21 N11 C26 358.8 360.0
C21 C22 N12 C25 359.5 359.9
C22 C21 C18 H18 76.4 215.1
C22 C21 C18 H18A 316.4 335.0
H22 C22 N12 C25 179.5 180.0
N11 C26 C25 C20 180.3 180.0
N28 C27 C16 H16 322.2 60.0
N28 C27 C16 H16A 202.3 300.0
C16 C27 N28 H27 120.0 120.0
C16 C27 N28 H27A 240.0 240.0
C27 N28 C18 H18 38.2 60.0
C27 N28 C18 H18A 158.3 300.0
H27 C27 N28 H27A 119.9 120.0
H27 C27 C16 H16 82.2 180.0
H27 C27 C16 H16A 322.3 60.0
C16 C27 H27 H27A 121.7 120.0
N28 C27 H27 H27A 238.4 240.0
H27A C27 C16 H16 202.2 300.0
H27A C27 C16 H16A 82.3 180.0
C16 C27 H27A H27 238.3 240.0
N28 C27 H27A H27 121.6 120.0
HN28 N28 C18 H18 158.2 184.0
HN28 N28 C18 H18A 278.3 64.0
HN28 N28 C27 H27 334.4 296.1
HN28 N28 C27 H27A 214.5 176.0