PDB Chemical Component IYX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IYX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
C1 |
1.389 |
1.410 |
| C1 |
C7 |
1.382 |
1.455 |
| C1 |
C2 |
1.378 |
1.398 |
| C2 |
C4 |
1.393 |
1.399 |
| C2 |
S9 |
1.624 |
1.760 |
| C5 |
C3 |
1.390 |
1.384 |
| C3 |
H3 |
1.080 |
1.080 |
| C6 |
C4 |
1.409 |
1.363 |
| C4 |
H4 |
1.080 |
1.079 |
| C10 |
C5 |
1.489 |
1.484 |
| C5 |
C6 |
1.409 |
1.399 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C8 |
1.390 |
1.318 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
C20 |
1.482 |
1.507 |
| C8 |
S9 |
1.632 |
1.752 |
| C12 |
C10 |
1.394 |
1.393 |
| C10 |
C11 |
1.391 |
1.393 |
| C13 |
C11 |
1.389 |
1.380 |
| C11 |
H11 |
1.080 |
1.080 |
| C14 |
C12 |
1.409 |
1.384 |
| C12 |
H12 |
1.080 |
1.080 |
| C15 |
C13 |
1.377 |
1.386 |
| C13 |
H13 |
1.080 |
1.080 |
| O16 |
C14 |
1.375 |
1.359 |
| C14 |
C15 |
1.395 |
1.392 |
| O18 |
C15 |
1.365 |
1.360 |
| C17 |
O16 |
1.435 |
1.429 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| C17 |
H17B |
1.100 |
1.090 |
| C19 |
O18 |
1.431 |
1.429 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.100 |
1.090 |
| C19 |
H19B |
1.100 |
1.090 |
| N22 |
C20 |
1.382 |
1.470 |
| C20 |
N21 |
1.288 |
1.469 |
| N21 |
HN21 |
1.000 |
1.009 |
| N21 |
HN2A |
1.000 |
1.009 |
| N22 |
HN2C |
1.000 |
1.008 |
| N22 |
HN2D |
1.000 |
1.010 |
| C20 |
H20 |
1.100 |
1.089 |
Bond Angles for IYX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C1 |
C7 |
125.8 |
129.2 |
| C2 |
C1 |
C7 |
112.6 |
111.9 |
| C1 |
C7 |
C8 |
112.1 |
114.8 |
| C1 |
C7 |
H7 |
123.9 |
122.5 |
| C1 |
C2 |
C4 |
119.5 |
120.0 |
| C1 |
C2 |
S9 |
109.4 |
109.6 |
| C4 |
C2 |
S9 |
131.1 |
130.4 |
| C2 |
C4 |
H4 |
120.2 |
119.7 |
| C2 |
S9 |
C8 |
96.9 |
92.2 |
| C5 |
C3 |
H3 |
119.9 |
119.9 |
| C6 |
C4 |
H4 |
120.2 |
119.7 |
| C5 |
C6 |
H6 |
119.8 |
119.9 |
| C8 |
C7 |
H7 |
123.9 |
122.6 |
| C7 |
C8 |
C20 |
125.1 |
124.3 |
| C7 |
C8 |
S9 |
108.9 |
111.5 |
| S9 |
C8 |
C20 |
126.0 |
124.3 |
| C8 |
C20 |
N21 |
120.6 |
109.5 |
| C8 |
C20 |
H20 |
43.5 |
109.5 |
| C10 |
C11 |
H11 |
119.5 |
120.0 |
| C13 |
C11 |
H11 |
119.4 |
120.0 |
| C14 |
C12 |
H12 |
120.0 |
120.1 |
| C15 |
C13 |
H13 |
120.1 |
120.0 |
| H17 |
C17 |
H17A |
109.4 |
109.5 |
| H17 |
C17 |
H17B |
109.5 |
109.4 |
| H17A |
C17 |
H17B |
109.5 |
109.5 |
| H19 |
C19 |
H19A |
109.5 |
109.6 |
| H19 |
C19 |
H19B |
109.5 |
109.5 |
| H19A |
C19 |
H19B |
109.5 |
109.5 |
| N22 |
C20 |
H20 |
100.2 |
109.4 |
| C20 |
N21 |
HN21 |
109.5 |
111.0 |
| C20 |
N21 |
HN2A |
109.5 |
111.0 |
| N21 |
C20 |
H20 |
127.7 |
109.5 |
| HN21 |
N21 |
HN2A |
109.5 |
111.0 |
| HN2C |
N22 |
HN2D |
109.4 |
111.0 |
Torsion Angles for IYX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C3 |
C7 |
179.5 |
180.3 |
| C3 |
C1 |
C7 |
C8 |
179.8 |
180.3 |
| C3 |
C1 |
C7 |
H7 |
359.8 |
0.3 |
| C3 |
C1 |
C2 |
C4 |
0.8 |
359.7 |
| C3 |
C1 |
C2 |
S9 |
180.6 |
179.7 |
| C7 |
C1 |
C2 |
C4 |
180.4 |
180.0 |
| C7 |
C1 |
C2 |
S9 |
0.2 |
0.0 |
| C8 |
C7 |
C1 |
H7 |
180.0 |
180.0 |
| C1 |
C7 |
C8 |
C20 |
181.5 |
180.0 |
| C1 |
C7 |
C8 |
S9 |
359.5 |
0.0 |
| C3 |
C1 |
C2 |
C7 |
180.4 |
179.7 |
| C2 |
C1 |
C7 |
C8 |
0.2 |
360.0 |
| C2 |
C1 |
C7 |
H7 |
180.2 |
180.0 |
| C4 |
C2 |
C1 |
S9 |
180.2 |
180.0 |
| C1 |
C2 |
C4 |
H4 |
179.0 |
180.0 |
| C1 |
C2 |
S9 |
C8 |
359.5 |
360.0 |
| C4 |
C2 |
C1 |
C7 |
180.4 |
180.0 |
| C1 |
C2 |
C4 |
S9 |
179.8 |
180.0 |
| C4 |
C2 |
S9 |
C8 |
179.3 |
180.0 |
| C6 |
C4 |
C2 |
H4 |
180.0 |
180.1 |
| S9 |
C2 |
C1 |
C7 |
0.2 |
0.0 |
| C1 |
C2 |
S9 |
C4 |
180.2 |
180.0 |
| S9 |
C2 |
C4 |
H4 |
359.3 |
360.0 |
| C7 |
C8 |
S9 |
C2 |
0.6 |
360.0 |
| C2 |
S9 |
C8 |
C20 |
178.6 |
180.0 |
| C5 |
C3 |
C1 |
C7 |
180.5 |
180.0 |
| H3 |
C3 |
C1 |
C7 |
0.5 |
359.9 |
| C6 |
C4 |
C2 |
S9 |
179.3 |
180.0 |
| C2 |
C4 |
C6 |
H4 |
180.0 |
179.9 |
| H4 |
C4 |
C2 |
S9 |
359.3 |
360.0 |
| C10 |
C5 |
C3 |
H3 |
0.8 |
359.9 |
| C10 |
C5 |
C6 |
H6 |
359.0 |
0.0 |
| C6 |
C5 |
C3 |
H3 |
179.2 |
179.9 |
| C5 |
C6 |
C4 |
H4 |
180.2 |
180.2 |
| H6 |
C6 |
C4 |
H4 |
0.2 |
0.0 |
| C1 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C2 |
S9 |
C8 |
C7 |
0.6 |
360.0 |
| S9 |
C8 |
C7 |
C20 |
178.0 |
180.0 |
| C7 |
C8 |
C20 |
N21 |
176.9 |
210.0 |
| C7 |
C8 |
C20 |
H20 |
291.1 |
90.0 |
| C1 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
C20 |
1.5 |
0.0 |
| H7 |
C7 |
C8 |
S9 |
179.5 |
180.0 |
| C20 |
C8 |
C7 |
H7 |
1.5 |
0.0 |
| C7 |
C8 |
C20 |
S9 |
177.7 |
180.0 |
| N22 |
C20 |
C8 |
H20 |
68.6 |
240.0 |
| C8 |
C20 |
N21 |
HN21 |
180.0 |
296.0 |
| C8 |
C20 |
N21 |
HN2A |
300.0 |
60.0 |
| N21 |
C20 |
C8 |
H20 |
245.8 |
120.0 |
| S9 |
C8 |
C7 |
H7 |
179.5 |
180.0 |
| C7 |
C8 |
S9 |
C20 |
182.0 |
180.0 |
| S9 |
C8 |
C20 |
N21 |
359.2 |
30.0 |
| S9 |
C8 |
C20 |
H20 |
113.4 |
270.0 |
| C12 |
C10 |
C11 |
H11 |
179.6 |
180.2 |
| C13 |
C11 |
C10 |
H11 |
180.0 |
180.1 |
| C10 |
C11 |
C13 |
H11 |
180.0 |
179.9 |
| C15 |
C13 |
C11 |
H11 |
180.0 |
180.1 |
| H13 |
C13 |
C11 |
H11 |
0.0 |
0.1 |
| O16 |
C14 |
C12 |
H12 |
0.5 |
0.1 |
| C15 |
C14 |
C12 |
H12 |
178.4 |
180.0 |
| C14 |
C15 |
C13 |
H13 |
179.5 |
179.6 |
| O18 |
C15 |
C13 |
H13 |
0.6 |
0.0 |
| H17A |
C17 |
H17 |
H17B |
120.0 |
120.0 |
| H17 |
C17 |
H17A |
H17B |
240.0 |
240.0 |
| H17 |
C17 |
H17B |
H17A |
120.0 |
120.0 |
| H19A |
C19 |
H19 |
H19B |
120.0 |
120.0 |
| H19 |
C19 |
H19A |
H19B |
240.0 |
240.0 |
| H19 |
C19 |
H19B |
H19A |
120.0 |
120.1 |
| C8 |
C20 |
N22 |
H20 |
319.4 |
120.0 |
| N22 |
C20 |
N21 |
HN21 |
357.4 |
176.1 |
| N22 |
C20 |
N21 |
HN2A |
117.4 |
300.0 |
| N21 |
C20 |
N22 |
H20 |
142.0 |
240.0 |
| C8 |
C20 |
N21 |
H20 |
52.6 |
239.9 |
| N22 |
C20 |
N21 |
H20 |
230.0 |
120.0 |
| HN21 |
N21 |
C20 |
HN2A |
240.0 |
236.0 |
| C20 |
N21 |
HN21 |
HN2A |
120.0 |
124.0 |
| HN21 |
N21 |
C20 |
H20 |
127.4 |
56.1 |
| C20 |
N21 |
HN2A |
HN21 |
240.0 |
236.0 |
| HN2A |
N21 |
C20 |
H20 |
247.4 |
180.1 |
| HN2C |
N22 |
C20 |
H20 |
220.7 |
296.1 |
| HN2D |
N22 |
C20 |
H20 |
340.6 |
60.0 |
| C8 |
C20 |
H20 |
N21 |
263.1 |
120.0 |
| H20 |
C20 |
N21 |
HN21 |
127.4 |
56.1 |
| H20 |
C20 |
N21 |
HN2A |
247.4 |
180.1 |