PDB Chemical Component IYT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IYT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAN CN 1.523 1.507
CAN HAN1 1.115 1.090
CAN HAN2 1.115 1.090
CAN HAN3 1.115 1.090
CN ON 1.240 1.212
CN N 1.340 1.348
N CA 1.452 1.466
N H 1.020 0.970
CA CB 1.536 1.530
CA C 1.529 1.506
CA HA 1.115 1.090
CB CG 1.507 1.507
CB HB2 1.115 1.090
CB HB3 1.115 1.089
CG CD1 1.394 1.382
CG CD2 1.395 1.383
CD1 CE1 1.382 1.382
CD1 HD1 1.103 1.081
CE1 CZ 1.391 1.388
CE1 I1 2.063 2.096
CD2 CE2 1.396 1.382
CD2 HD2 1.103 1.080
CE2 CZ 1.406 1.387
CE2 I2 2.066 2.095
CZ OH 1.376 1.359
OH HH 0.950 0.967
C O 1.239 1.213
C NT 1.336 1.348
NT CAT 1.464 1.465
NT HNT 1.020 0.971
CAT CBT 1.544 1.530
CAT CT 1.536 1.507
CAT HAT 1.115 1.090
CBT OGT 1.432 1.430
CBT CGT 1.528 1.530
CBT HBT 1.115 1.090
OGT HGT 0.950 0.968
CGT HGT1 1.115 1.090
CGT HGT2 1.115 1.089
CGT HGT3 1.115 1.090
CT OX1 1.249 1.343
CT OX2 1.256 1.209
OX1 HX1 0.950 0.967

Bond Angles for IYT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CN CAN HAN1 108.7 109.4
CN CAN HAN2 119.3 109.5
CN CAN HAN3 108.7 109.5
CAN CN ON 119.3 120.0
CAN CN N 117.8 120.0
HAN1 CAN HAN2 108.7 109.5
HAN1 CAN HAN3 101.3 109.4
HAN2 CAN HAN3 108.7 109.5
ON CN N 122.9 120.0
CN N CA 119.4 120.0
CN N H 116.4 120.0
CA N H 124.3 120.0
N CA CB 111.0 109.5
N CA C 113.5 109.5
N CA HA 106.8 109.5
CB CA C 112.9 109.5
CB CA HA 107.5 109.4
CA CB CG 117.9 109.5
CA CB HB2 109.2 109.5
CA CB HB3 109.2 109.5
C CA HA 104.7 109.5
CA C O 121.2 120.0
CA C NT 115.0 120.0
CG CB HB2 109.1 109.4
CG CB HB3 109.1 109.5
CB CG CD1 120.1 120.0
CB CG CD2 121.4 119.9
HB2 CB HB3 100.9 109.4
CD1 CG CD2 118.3 120.1
CG CD1 CE1 121.8 120.1
CG CD1 HD1 119.6 120.0
CG CD2 CE2 120.9 120.0
CG CD2 HD2 119.5 119.9
CE1 CD1 HD1 118.6 119.9
CD1 CE1 CZ 119.7 119.9
CD1 CE1 I1 119.6 120.0
CZ CE1 I1 120.7 120.0
CE1 CZ CE2 119.8 119.9
CE1 CZ OH 118.7 120.1
CE2 CD2 HD2 119.6 120.0
CD2 CE2 CZ 119.5 119.9
CD2 CE2 I2 119.7 120.0
CZ CE2 I2 120.8 120.1
CE2 CZ OH 121.4 120.0
CZ OH HH 118.7 106.8
O C NT 123.8 120.0
C NT CAT 124.7 120.0
C NT HNT 112.6 120.0
CAT NT HNT 122.7 120.0
NT CAT CBT 113.1 109.5
NT CAT CT 109.0 109.5
NT CAT HAT 107.3 109.5
CBT CAT CT 109.7 109.5
CBT CAT HAT 106.7 109.4
CAT CBT OGT 109.8 109.4
CAT CBT CGT 109.9 109.5
CAT CBT HBT 108.8 109.5
CT CAT HAT 111.0 109.5
CAT CT OX1 118.7 120.0
CAT CT OX2 117.6 120.0
OGT CBT CGT 108.9 109.5
OGT CBT HBT 109.7 109.5
CBT OGT HGT 109.9 106.8
CGT CBT HBT 109.7 109.4
CBT CGT HGT1 112.0 109.5
CBT CGT HGT2 109.9 109.5
CBT CGT HGT3 112.0 109.5
HGT1 CGT HGT2 112.1 109.5
HGT1 CGT HGT3 98.4 109.4
HGT2 CGT HGT3 112.0 109.5
OX1 CT OX2 123.7 120.0
CT OX1 HX1 118.7 120.0

Torsion Angles for IYT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HAN1 CAN CN HAN2 234.7 240.0
HAN1 CAN CN HAN3 109.5 119.9
HAN2 CAN CN HAN3 234.7 240.0
ON CN CAN N 181.8 180.0
CAN CN N CA 177.6 180.0
CAN CN N H 357.6 360.0
CN CAN HAN1 HAN2 131.3 120.0
CN CAN HAN1 HAN3 245.6 240.0
HAN1 CAN CN ON 54.7 180.0
HAN1 CAN CN N 233.0 360.0
HAN2 CAN HAN1 HAN3 114.4 120.0
CN CAN HAN2 HAN1 234.7 240.0
CN CAN HAN2 HAN3 125.3 120.0
HAN2 CAN CN ON 180.0 300.0
HAN2 CAN CN N 358.2 120.0
HAN1 CAN HAN2 HAN3 250.5 240.0
CN CAN HAN3 HAN1 114.4 119.9
CN CAN HAN3 HAN2 228.7 240.0
HAN3 CAN CN ON 305.3 60.1
HAN3 CAN CN N 123.5 240.0
HAN1 CAN HAN3 HAN2 114.4 120.0
ON CN CAN HAN1 54.7 180.0
ON CN CAN HAN2 180.0 300.0
ON CN CAN HAN3 305.3 60.1
CAN CN ON N 178.1 180.0
ON CN N CA 355.8 0.0
ON CN N H 175.8 180.0
N CN CAN HAN1 233.0 360.0
N CN CAN HAN2 358.2 120.0
N CN CAN HAN3 123.5 240.0
CAN CN N ON 181.8 180.0
CA N CN H 180.0 180.0
CN N CA CB 91.3 300.0
CN N CA C 219.7 60.0
CN N CA HA 334.4 180.0
CN N CA H 180.0 180.0
CB CA N C 231.6 240.0
CB CA N HA 116.8 119.9
N CA CB CG 71.8 295.0
N CA CB HB2 306.5 55.0
N CA CB HB3 197.0 175.0
C CA N HA 245.2 240.0
N CA C O 343.7 340.0
N CA C NT 161.6 160.0
CN N H CA 180.0 180.0
H N CA CB 271.3 120.0
H N CA C 39.7 240.0
H N CA HA 154.4 0.1
CB CA N H 271.3 120.0
N CA CB C 128.7 120.0
N CA CB HA 243.6 240.0
C CA CB HA 114.9 120.0
CB CA C O 111.2 100.0
CB CA C NT 289.1 280.1
CG CB CA HB2 125.2 240.0
CG CB CA HB3 234.7 120.0
CA CB CG CD1 109.7 90.0
CA CB CG CD2 284.3 269.7
HB2 CB CA HB3 109.5 240.0
C CA N H 39.7 240.0
N CA C CB 232.5 240.0
N CA C HA 116.0 120.0
CB CA C HA 243.5 240.0
C CA CB CG 303.0 175.0
C CA CB HB2 177.8 295.0
C CA CB HB3 68.3 55.0
O C CA NT 182.1 179.9
CA C NT CAT 183.4 180.0
CA C NT HNT 3.4 359.9
HA CA N H 154.4 0.1
N CA HA CB 119.2 120.0
N CA HA C 239.4 240.0
CB CA HA C 120.2 120.0
HA CA CB CG 188.2 55.0
HA CA CB HB2 62.9 175.0
HA CA CB HB3 313.4 295.0
HA CA C O 227.7 220.0
HA CA C NT 45.6 40.0
CG CB CA C 303.0 175.0
CG CB CA HA 188.2 55.0
CA CB CG HB2 234.7 120.0
CA CB CG HB3 125.3 240.0
HB2 CB CG HB3 250.5 120.0
CD1 CG CB CD2 185.4 180.3
CB CG CD1 CE1 173.8 180.0
CB CG CD1 HD1 353.8 0.0
CB CG CD2 CE2 186.0 179.7
CB CG CD2 HD2 6.0 0.2
HB2 CB CA C 177.8 295.0
HB2 CB CA HA 62.9 175.0
CA CB HB2 CG 130.2 240.0
CA CB HB2 HB3 245.1 120.0
CG CB HB2 HB3 114.9 240.0
HB2 CB CG CD1 234.9 330.0
HB2 CB CG CD2 49.5 149.7
HB3 CB CA C 68.3 55.0
HB3 CB CA HA 313.4 295.0
CA CB HB3 CG 229.8 120.0
CA CB HB3 HB2 114.9 240.0
CG CB HB3 HB2 245.1 120.0
HB3 CB CG CD1 344.4 210.0
HB3 CB CG CD2 159.0 29.7
CD1 CG CB HB2 234.9 330.0
CD1 CG CB HB3 344.4 210.0
CB CG CD1 CD2 174.8 179.7
CD1 CG CD2 CE2 0.7 359.4
CD1 CG CD2 HD2 180.7 179.9
CE1 CD1 CG HD1 180.0 180.0
CG CD1 CE1 CZ 0.2 0.0
CG CD1 CE1 I1 179.4 180.0
CD2 CG CB HB2 49.5 149.7
CD2 CG CB HB3 159.0 29.7
CB CG CD2 CD1 185.3 180.3
CD2 CG CD1 CE1 359.1 0.3
CD2 CG CD1 HD1 179.1 180.3
CE2 CD2 CG HD2 180.0 179.5
CG CD2 CE2 CZ 0.3 0.5
CG CD2 CE2 I2 181.4 180.2
CE1 CD1 CG CD2 359.1 0.3
CG CD1 CE1 HD1 180.0 180.0
CZ CE1 CD1 I1 180.8 180.0
CD1 CE1 CZ CE2 0.7 360.0
CD1 CE1 CZ OH 183.3 180.0
HD1 CD1 CG CD2 179.1 180.3
CG CD1 HD1 CE1 180.0 180.0
HD1 CD1 CE1 CZ 180.3 180.0
HD1 CD1 CE1 I1 359.4 360.0
CZ CE1 CD1 HD1 180.3 180.0
CD1 CE1 CZ I1 179.2 180.0
CD2 CE2 CZ CE1 359.1 359.8
CE1 CZ CE2 I2 177.9 180.1
CE2 CZ CE1 OH 177.4 179.9
CE1 CZ OH HH 180.0 90.0
I1 CE1 CD1 HD1 359.4 360.0
CD1 CE1 I1 CZ 180.8 180.0
I1 CE1 CZ CE2 181.5 180.0
I1 CE1 CZ OH 4.1 0.0
CG CD2 CE2 HD2 180.0 180.5
CE1 CZ CE2 CD2 359.1 359.8
CZ CE2 CD2 I2 178.9 180.3
CD2 CE2 CZ OH 176.4 179.7
CG CD2 HD2 CE2 180.0 179.5
HD2 CD2 CE2 CZ 180.2 180.0
HD2 CD2 CE2 I2 1.3 359.7
CE2 CZ CE1 I1 181.5 180.0
CE1 CZ CE2 OH 182.6 180.1
CZ CE2 CD2 HD2 180.2 180.0
CD2 CE2 CZ I2 181.1 179.7
CE2 CZ OH HH 2.7 270.0
I2 CE2 CD2 HD2 1.3 359.7
CD2 CE2 I2 CZ 178.9 180.3
I2 CE2 CZ OH 355.3 0.0
OH CZ CE1 I1 4.1 0.0
CE1 CZ OH CE2 177.4 179.9
OH CZ CE2 I2 355.3 0.0
O C CA HA 227.7 220.0
CA C O NT 177.7 180.1
O C NT CAT 1.2 0.1
O C NT HNT 181.2 180.0
NT C CA HA 45.6 40.0
CA C NT O 182.2 179.9
CAT NT C HNT 180.0 180.1
C NT CAT CBT 308.8 275.0
C NT CAT CT 186.4 154.9
C NT CAT HAT 66.1 34.9
C NT CAT HNT 180.0 179.9
CBT CAT NT CT 122.3 120.0
CBT CAT NT HAT 242.6 240.1
NT CAT CBT OGT 291.4 295.0
NT CAT CBT CGT 171.6 175.0
NT CAT CBT HBT 51.5 55.0
CT CAT NT HAT 120.3 120.0
NT CAT CT OX1 202.8 180.0
NT CAT CT OX2 21.7 0.0
C NT HNT CAT 180.0 180.1
HNT NT CAT CBT 128.8 95.1
HNT NT CAT CT 6.4 335.0
HNT NT CAT HAT 246.1 215.0
CBT CAT NT HNT 128.8 95.1
NT CAT CBT CT 238.0 240.0
NT CAT CBT HAT 117.8 120.0
CT CAT CBT HAT 239.8 240.1
CBT CAT CT OX1 78.4 60.0
CBT CAT CT OX2 257.3 240.0
OGT CBT CAT CGT 119.8 120.0
OGT CBT CAT HBT 239.9 240.0
CAT CBT OGT HGT 180.0 180.0
CGT CBT CAT HBT 120.0 120.0
CAT CBT CGT HGT1 54.7 179.9
CAT CBT CGT HGT2 180.0 300.0
CAT CBT CGT HGT3 305.3 60.0
CT CAT NT HNT 6.4 335.0
NT CAT CT CBT 124.4 120.0
NT CAT CT HAT 242.0 239.9
CBT CAT CT HAT 117.6 119.9
CT CAT CBT OGT 53.4 55.0
CT CAT CBT CGT 293.5 295.0
CT CAT CBT HBT 173.5 175.0
OX1 CT CAT OX2 181.1 180.0
CAT CT OX1 HX1 180.0 180.0
HAT CAT NT HNT 246.1 215.0
NT CAT HAT CBT 238.5 240.0
NT CAT HAT CT 119.1 120.1
CBT CAT HAT CT 240.6 240.0
HAT CAT CBT OGT 173.6 175.0
HAT CAT CBT CGT 53.8 55.0
HAT CAT CBT HBT 293.7 295.0
HAT CAT CT OX1 320.8 300.1
HAT CAT CT OX2 139.7 120.1
OGT CBT CAT CT 53.4 55.0
OGT CBT CAT HAT 173.6 175.0
CAT CBT OGT CGT 239.6 240.0
CAT CBT OGT HBT 119.5 120.0
CGT CBT OGT HBT 239.9 240.0
OGT CBT CGT HGT1 294.4 60.0
OGT CBT CGT HGT2 59.6 180.0
OGT CBT CGT HGT3 184.9 300.0
CGT CBT CAT CT 293.5 295.0
CGT CBT CAT HAT 53.8 55.0
CAT CBT CGT OGT 120.4 120.0
CAT CBT CGT HBT 240.5 240.0
OGT CBT CGT HBT 120.1 120.0
CGT CBT OGT HGT 300.4 300.0
HGT1 CGT CBT HGT2 234.7 239.9
HGT1 CGT CBT HGT3 109.5 119.9
HGT2 CGT CBT HGT3 234.8 240.0
HBT CBT CAT CT 173.5 175.0
HBT CBT CAT HAT 293.7 295.0
CAT CBT HBT OGT 239.8 240.0
CAT CBT HBT CGT 120.2 120.0
OGT CBT HBT CGT 240.4 240.0
HBT CBT OGT HGT 60.5 60.0
HBT CBT CGT HGT1 174.2 300.0
HBT CBT CGT HGT2 299.5 60.0
HBT CBT CGT HGT3 64.8 180.1
HGT OGT CBT CGT 300.4 300.0
HGT OGT CBT HBT 60.5 60.0
HGT1 CGT CBT HBT 174.2 300.0
CBT CGT HGT1 HGT2 124.1 120.0
CBT CGT HGT1 HGT3 242.1 240.0
HGT2 CGT HGT1 HGT3 118.0 120.0
HGT2 CGT CBT HBT 299.5 60.0
CBT CGT HGT2 HGT1 234.7 240.0
CBT CGT HGT2 HGT3 125.2 120.0
HGT1 CGT HGT2 HGT3 250.5 240.0
HGT3 CGT CBT HBT 64.8 180.1
CBT CGT HGT3 HGT1 117.9 120.0
CBT CGT HGT3 HGT2 235.9 240.0
HGT1 CGT HGT3 HGT2 118.0 120.0
OX1 CT CAT HAT 320.8 300.1
CAT CT OX1 OX2 178.8 180.0
OX2 CT CAT HAT 139.7 120.1
CAT CT OX2 OX1 181.2 180.0
OX2 CT OX1 HX1 1.2 0.0
HX1 OX1 CT OX2 1.2 0.0