PDB Chemical Component IYG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IYG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAN |
CN |
1.516 |
1.507 |
| CAN |
HAN1 |
1.115 |
1.090 |
| CAN |
HAN2 |
1.115 |
1.090 |
| CAN |
HAN3 |
1.115 |
1.091 |
| CN |
ON |
1.240 |
1.212 |
| CN |
N |
1.339 |
1.347 |
| N |
CA |
1.472 |
1.465 |
| N |
H |
1.019 |
0.969 |
| CA |
CB |
1.519 |
1.529 |
| CA |
C |
1.532 |
1.507 |
| CA |
HA |
1.115 |
1.089 |
| CB |
CG |
1.490 |
1.507 |
| CB |
HB1 |
1.114 |
1.089 |
| CB |
HB2 |
1.116 |
1.090 |
| CG |
CD1 |
1.394 |
1.382 |
| CG |
CD2 |
1.385 |
1.381 |
| CD1 |
CE1 |
1.384 |
1.382 |
| CD1 |
HD1 |
1.103 |
1.080 |
| CE1 |
CZ |
1.417 |
1.387 |
| CE1 |
I1 |
2.086 |
2.095 |
| CD2 |
CE2 |
1.365 |
1.382 |
| CD2 |
HD2 |
1.104 |
1.079 |
| CE2 |
CZ |
1.422 |
1.388 |
| CE2 |
I2 |
2.077 |
2.095 |
| CZ |
OH |
1.376 |
1.359 |
| OH |
H1O |
0.950 |
0.966 |
| C |
O |
1.238 |
1.213 |
| C |
NT |
1.334 |
1.347 |
| NT |
CAT |
1.457 |
1.464 |
| NT |
HT1 |
1.019 |
0.969 |
| CAT |
CT |
1.524 |
1.506 |
| CAT |
HAT1 |
1.115 |
1.090 |
| CAT |
HAT2 |
1.115 |
1.090 |
| CT |
OT1 |
1.253 |
1.207 |
| CT |
OT2 |
1.256 |
1.342 |
| OT2 |
HXT |
0.950 |
0.967 |
Bond Angles for IYG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CN |
CAN |
HAN1 |
120.1 |
109.5 |
| CN |
CAN |
HAN2 |
108.4 |
109.5 |
| CN |
CAN |
HAN3 |
108.4 |
109.5 |
| CAN |
CN |
ON |
120.1 |
120.0 |
| CAN |
CN |
N |
115.8 |
120.0 |
| HAN1 |
CAN |
HAN2 |
108.4 |
109.4 |
| HAN1 |
CAN |
HAN3 |
108.5 |
109.5 |
| HAN2 |
CAN |
HAN3 |
101.5 |
109.4 |
| ON |
CN |
N |
124.2 |
120.0 |
| CN |
N |
CA |
124.4 |
120.0 |
| CN |
N |
H |
112.7 |
120.0 |
| CA |
N |
H |
122.9 |
120.0 |
| N |
CA |
CB |
110.3 |
109.5 |
| N |
CA |
C |
116.3 |
109.5 |
| N |
CA |
HA |
103.9 |
109.5 |
| CB |
CA |
C |
109.0 |
109.5 |
| CB |
CA |
HA |
112.0 |
109.5 |
| CA |
CB |
CG |
114.0 |
109.5 |
| CA |
CB |
HB1 |
110.5 |
109.5 |
| CA |
CB |
HB2 |
110.5 |
109.5 |
| C |
CA |
HA |
105.3 |
109.5 |
| CA |
C |
O |
121.1 |
120.0 |
| CA |
C |
NT |
115.5 |
120.0 |
| CG |
CB |
HB1 |
110.6 |
109.5 |
| CG |
CB |
HB2 |
110.6 |
109.5 |
| CB |
CG |
CD1 |
121.1 |
119.9 |
| CB |
CG |
CD2 |
119.9 |
120.0 |
| HB1 |
CB |
HB2 |
99.7 |
109.4 |
| CD1 |
CG |
CD2 |
119.1 |
120.2 |
| CG |
CD1 |
CE1 |
121.2 |
120.0 |
| CG |
CD1 |
HD1 |
119.7 |
120.0 |
| CG |
CD2 |
CE2 |
122.1 |
120.1 |
| CG |
CD2 |
HD2 |
119.7 |
120.1 |
| CE1 |
CD1 |
HD1 |
119.1 |
120.0 |
| CD1 |
CE1 |
CZ |
119.0 |
119.9 |
| CD1 |
CE1 |
I1 |
119.4 |
120.0 |
| CZ |
CE1 |
I1 |
121.5 |
120.0 |
| CE1 |
CZ |
CE2 |
119.4 |
119.9 |
| CE1 |
CZ |
OH |
119.4 |
120.1 |
| CE2 |
CD2 |
HD2 |
118.2 |
119.9 |
| CD2 |
CE2 |
CZ |
119.2 |
119.9 |
| CD2 |
CE2 |
I2 |
118.7 |
120.1 |
| CZ |
CE2 |
I2 |
122.1 |
120.0 |
| CE2 |
CZ |
OH |
121.0 |
120.1 |
| CZ |
OH |
H1O |
119.4 |
106.9 |
| O |
C |
NT |
123.4 |
120.0 |
| C |
NT |
CAT |
121.6 |
120.1 |
| C |
NT |
HT1 |
114.7 |
120.0 |
| CAT |
NT |
HT1 |
123.7 |
119.9 |
| NT |
CAT |
CT |
113.8 |
109.6 |
| NT |
CAT |
HAT1 |
110.6 |
109.4 |
| NT |
CAT |
HAT2 |
110.7 |
109.5 |
| CT |
CAT |
HAT1 |
110.6 |
109.5 |
| CT |
CAT |
HAT2 |
110.6 |
109.5 |
| CAT |
CT |
OT1 |
118.8 |
119.9 |
| CAT |
CT |
OT2 |
118.8 |
120.0 |
| HAT1 |
CAT |
HAT2 |
99.6 |
109.4 |
| OT1 |
CT |
OT2 |
122.4 |
120.0 |
| CT |
OT2 |
HXT |
118.8 |
120.0 |
Torsion Angles for IYG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HAN1 |
CAN |
CN |
HAN2 |
234.8 |
240.0 |
| HAN1 |
CAN |
CN |
HAN3 |
125.3 |
120.0 |
| HAN2 |
CAN |
CN |
HAN3 |
250.5 |
240.0 |
| ON |
CN |
CAN |
N |
180.1 |
180.0 |
| CAN |
CN |
N |
CA |
179.7 |
180.0 |
| CAN |
CN |
N |
H |
359.7 |
360.0 |
| CN |
CAN |
HAN1 |
HAN2 |
125.2 |
120.0 |
| CN |
CAN |
HAN1 |
HAN3 |
234.7 |
239.9 |
| HAN1 |
CAN |
CN |
ON |
180.0 |
240.0 |
| HAN1 |
CAN |
CN |
N |
360.0 |
60.0 |
| HAN2 |
CAN |
HAN1 |
HAN3 |
109.5 |
119.9 |
| CN |
CAN |
HAN2 |
HAN1 |
228.2 |
240.0 |
| CN |
CAN |
HAN2 |
HAN3 |
114.1 |
120.0 |
| HAN2 |
CAN |
CN |
ON |
305.3 |
0.0 |
| HAN2 |
CAN |
CN |
N |
125.2 |
180.0 |
| HAN1 |
CAN |
HAN2 |
HAN3 |
245.9 |
240.0 |
| CN |
CAN |
HAN3 |
HAN1 |
131.9 |
120.0 |
| CN |
CAN |
HAN3 |
HAN2 |
245.9 |
240.0 |
| HAN3 |
CAN |
CN |
ON |
54.7 |
120.0 |
| HAN3 |
CAN |
CN |
N |
234.6 |
300.0 |
| HAN1 |
CAN |
HAN3 |
HAN2 |
114.1 |
119.9 |
| ON |
CN |
CAN |
HAN1 |
180.0 |
240.0 |
| ON |
CN |
CAN |
HAN2 |
305.3 |
0.0 |
| ON |
CN |
CAN |
HAN3 |
54.7 |
120.0 |
| CAN |
CN |
ON |
N |
179.9 |
180.0 |
| ON |
CN |
N |
CA |
359.7 |
0.0 |
| ON |
CN |
N |
H |
179.6 |
180.0 |
| N |
CN |
CAN |
HAN1 |
360.0 |
60.0 |
| N |
CN |
CAN |
HAN2 |
125.2 |
180.0 |
| N |
CN |
CAN |
HAN3 |
234.6 |
300.0 |
| CAN |
CN |
N |
ON |
180.1 |
180.0 |
| CA |
N |
CN |
H |
180.0 |
180.0 |
| CN |
N |
CA |
CB |
313.4 |
300.0 |
| CN |
N |
CA |
C |
78.1 |
60.0 |
| CN |
N |
CA |
HA |
193.2 |
180.0 |
| CN |
N |
CA |
H |
180.0 |
180.0 |
| CB |
CA |
N |
C |
235.3 |
240.0 |
| CB |
CA |
N |
HA |
120.1 |
120.0 |
| N |
CA |
CB |
CG |
246.2 |
300.0 |
| N |
CA |
CB |
HB1 |
11.5 |
60.1 |
| N |
CA |
CB |
HB2 |
120.9 |
180.0 |
| C |
CA |
N |
HA |
244.9 |
240.0 |
| N |
CA |
C |
O |
352.3 |
330.0 |
| N |
CA |
C |
NT |
171.6 |
150.0 |
| CN |
N |
H |
CA |
180.0 |
180.0 |
| H |
N |
CA |
CB |
133.4 |
120.0 |
| H |
N |
CA |
C |
258.1 |
240.0 |
| H |
N |
CA |
HA |
13.3 |
360.0 |
| CB |
CA |
N |
H |
133.4 |
120.0 |
| N |
CA |
CB |
C |
128.8 |
120.0 |
| N |
CA |
CB |
HA |
244.8 |
240.0 |
| C |
CA |
CB |
HA |
116.0 |
120.0 |
| CB |
CA |
C |
O |
117.6 |
90.0 |
| CB |
CA |
C |
NT |
296.9 |
270.0 |
| CG |
CB |
CA |
HB1 |
234.7 |
239.9 |
| CG |
CB |
CA |
HB2 |
125.3 |
120.0 |
| CA |
CB |
CG |
CD1 |
44.4 |
90.0 |
| CA |
CB |
CG |
CD2 |
223.5 |
269.7 |
| HB1 |
CB |
CA |
HB2 |
250.6 |
240.1 |
| C |
CA |
N |
H |
258.1 |
240.0 |
| N |
CA |
C |
CB |
234.6 |
240.0 |
| N |
CA |
C |
HA |
114.4 |
120.0 |
| CB |
CA |
C |
HA |
239.8 |
240.0 |
| C |
CA |
CB |
CG |
117.4 |
180.0 |
| C |
CA |
CB |
HB1 |
242.7 |
300.0 |
| C |
CA |
CB |
HB2 |
352.1 |
60.0 |
| O |
C |
CA |
NT |
180.7 |
180.0 |
| CA |
C |
NT |
CAT |
180.0 |
180.0 |
| CA |
C |
NT |
HT1 |
0.0 |
360.0 |
| HA |
CA |
N |
H |
13.3 |
360.0 |
| N |
CA |
HA |
CB |
119.0 |
120.0 |
| N |
CA |
HA |
C |
237.3 |
240.0 |
| CB |
CA |
HA |
C |
118.3 |
120.0 |
| HA |
CA |
CB |
CG |
1.3 |
60.0 |
| HA |
CA |
CB |
HB1 |
126.6 |
180.0 |
| HA |
CA |
CB |
HB2 |
236.1 |
300.0 |
| HA |
CA |
C |
O |
237.9 |
210.0 |
| HA |
CA |
C |
NT |
57.2 |
30.0 |
| CG |
CB |
CA |
C |
117.4 |
180.0 |
| CG |
CB |
CA |
HA |
1.3 |
60.0 |
| CA |
CB |
CG |
HB1 |
125.3 |
120.0 |
| CA |
CB |
CG |
HB2 |
234.8 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
109.5 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
180.9 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
178.8 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
358.8 |
0.0 |
| CB |
CG |
CD2 |
CE2 |
181.3 |
179.8 |
| CB |
CG |
CD2 |
HD2 |
1.3 |
0.3 |
| HB1 |
CB |
CA |
C |
242.7 |
300.0 |
| HB1 |
CB |
CA |
HA |
126.6 |
180.0 |
| CA |
CB |
HB1 |
CG |
232.8 |
239.9 |
| CA |
CB |
HB1 |
HB2 |
116.4 |
119.9 |
| CG |
CB |
HB1 |
HB2 |
243.6 |
240.0 |
| HB1 |
CB |
CG |
CD1 |
279.1 |
330.0 |
| HB1 |
CB |
CG |
CD2 |
98.2 |
149.7 |
| HB2 |
CB |
CA |
C |
352.1 |
60.0 |
| HB2 |
CB |
CA |
HA |
236.1 |
300.0 |
| CA |
CB |
HB2 |
CG |
127.2 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
243.6 |
240.1 |
| CG |
CB |
HB2 |
HB1 |
116.4 |
120.1 |
| HB2 |
CB |
CG |
CD1 |
169.7 |
210.0 |
| HB2 |
CB |
CG |
CD2 |
348.7 |
29.7 |
| CD1 |
CG |
CB |
HB1 |
279.1 |
330.0 |
| CD1 |
CG |
CB |
HB2 |
169.7 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
179.1 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
0.4 |
359.5 |
| CD1 |
CG |
CD2 |
HD2 |
180.4 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
1.0 |
360.0 |
| CG |
CD1 |
CE1 |
I1 |
184.3 |
180.0 |
| CD2 |
CG |
CB |
HB1 |
98.2 |
149.7 |
| CD2 |
CG |
CB |
HB2 |
348.7 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
180.9 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
359.7 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
179.7 |
180.3 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.5 |
| CG |
CD2 |
CE2 |
CZ |
358.8 |
0.5 |
| CG |
CD2 |
CE2 |
I2 |
175.8 |
180.2 |
| CE1 |
CD1 |
CG |
CD2 |
359.7 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
I1 |
176.7 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
358.2 |
360.0 |
| CD1 |
CE1 |
CZ |
OH |
173.9 |
180.1 |
| HD1 |
CD1 |
CG |
CD2 |
179.7 |
180.3 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
181.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
I1 |
4.3 |
0.0 |
| CZ |
CE1 |
CD1 |
HD1 |
181.0 |
180.0 |
| CD1 |
CE1 |
CZ |
I1 |
183.4 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
1.8 |
359.8 |
| CE1 |
CZ |
CE2 |
I2 |
185.0 |
180.0 |
| CE2 |
CZ |
CE1 |
OH |
184.4 |
179.9 |
| CE1 |
CZ |
OH |
H1O |
180.1 |
90.0 |
| I1 |
CE1 |
CD1 |
HD1 |
4.3 |
0.0 |
| CD1 |
CE1 |
I1 |
CZ |
176.6 |
180.0 |
| I1 |
CE1 |
CZ |
CE2 |
174.9 |
179.9 |
| I1 |
CE1 |
CZ |
OH |
350.5 |
0.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.5 |
| CE1 |
CZ |
CE2 |
CD2 |
1.8 |
359.8 |
| CZ |
CE2 |
CD2 |
I2 |
183.1 |
180.2 |
| CD2 |
CE2 |
CZ |
OH |
186.3 |
179.7 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.5 |
| HD2 |
CD2 |
CE2 |
CZ |
178.8 |
180.0 |
| HD2 |
CD2 |
CE2 |
I2 |
355.7 |
359.7 |
| CE2 |
CZ |
CE1 |
I1 |
174.9 |
179.9 |
| CE1 |
CZ |
CE2 |
OH |
175.5 |
180.1 |
| CZ |
CE2 |
CD2 |
HD2 |
178.8 |
180.0 |
| CD2 |
CE2 |
CZ |
I2 |
176.8 |
179.8 |
| CE2 |
CZ |
OH |
H1O |
355.6 |
270.1 |
| I2 |
CE2 |
CD2 |
HD2 |
355.7 |
359.7 |
| CD2 |
CE2 |
I2 |
CZ |
183.2 |
180.2 |
| I2 |
CE2 |
CZ |
OH |
9.5 |
359.9 |
| OH |
CZ |
CE1 |
I1 |
350.5 |
0.0 |
| CE1 |
CZ |
OH |
CE2 |
184.5 |
179.9 |
| OH |
CZ |
CE2 |
I2 |
9.5 |
359.9 |
| O |
C |
CA |
HA |
237.9 |
210.0 |
| CA |
C |
O |
NT |
179.2 |
180.0 |
| O |
C |
NT |
CAT |
359.3 |
0.1 |
| O |
C |
NT |
HT1 |
179.3 |
180.0 |
| NT |
C |
CA |
HA |
57.2 |
30.0 |
| CA |
C |
NT |
O |
180.7 |
180.0 |
| CAT |
NT |
C |
HT1 |
180.0 |
180.1 |
| C |
NT |
CAT |
CT |
189.0 |
179.9 |
| C |
NT |
CAT |
HAT1 |
314.3 |
300.0 |
| C |
NT |
CAT |
HAT2 |
63.7 |
59.9 |
| C |
NT |
CAT |
HT1 |
180.0 |
179.9 |
| CT |
CAT |
NT |
HAT1 |
234.7 |
240.0 |
| CT |
CAT |
NT |
HAT2 |
125.3 |
120.1 |
| NT |
CAT |
CT |
OT1 |
285.3 |
0.1 |
| NT |
CAT |
CT |
OT2 |
105.2 |
179.9 |
| HAT1 |
CAT |
NT |
HAT2 |
250.5 |
240.1 |
| C |
NT |
HT1 |
CAT |
180.0 |
180.1 |
| HT1 |
NT |
CAT |
CT |
9.0 |
0.0 |
| HT1 |
NT |
CAT |
HAT1 |
134.3 |
120.0 |
| HT1 |
NT |
CAT |
HAT2 |
243.7 |
239.9 |
| CT |
CAT |
NT |
HT1 |
9.0 |
0.0 |
| NT |
CAT |
CT |
HAT1 |
125.3 |
120.0 |
| NT |
CAT |
CT |
HAT2 |
234.7 |
239.9 |
| HAT1 |
CAT |
CT |
HAT2 |
109.4 |
119.9 |
| OT1 |
CT |
CAT |
OT2 |
180.1 |
180.1 |
| CAT |
CT |
OT2 |
HXT |
179.9 |
180.0 |
| HAT1 |
CAT |
NT |
HT1 |
134.3 |
120.0 |
| NT |
CAT |
HAT1 |
CT |
232.9 |
239.9 |
| NT |
CAT |
HAT1 |
HAT2 |
116.5 |
120.0 |
| CT |
CAT |
HAT1 |
HAT2 |
243.6 |
240.0 |
| HAT1 |
CAT |
CT |
OT1 |
160.0 |
240.1 |
| HAT1 |
CAT |
CT |
OT2 |
339.9 |
59.9 |
| HAT2 |
CAT |
NT |
HT1 |
243.7 |
239.9 |
| NT |
CAT |
HAT2 |
CT |
127.1 |
120.1 |
| NT |
CAT |
HAT2 |
HAT1 |
243.5 |
240.1 |
| CT |
CAT |
HAT2 |
HAT1 |
116.4 |
120.0 |
| HAT2 |
CAT |
CT |
OT1 |
50.6 |
120.1 |
| HAT2 |
CAT |
CT |
OT2 |
230.5 |
300.0 |
| OT1 |
CT |
CAT |
HAT1 |
160.0 |
240.1 |
| OT1 |
CT |
CAT |
HAT2 |
50.6 |
120.1 |
| CAT |
CT |
OT1 |
OT2 |
179.9 |
179.9 |
| OT1 |
CT |
OT2 |
HXT |
359.8 |
359.9 |
| OT2 |
CT |
CAT |
HAT1 |
339.9 |
59.9 |
| OT2 |
CT |
CAT |
HAT2 |
230.5 |
300.0 |
| CAT |
CT |
OT2 |
OT1 |
180.1 |
180.1 |