PDB Chemical Component IXO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IXO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C03 |
N02 |
1.437 |
1.469 |
| N02 |
C01 |
1.456 |
1.469 |
| N02 |
C04 |
1.522 |
1.469 |
| N02 |
C05 |
1.433 |
1.469 |
| C05 |
C06 |
1.494 |
1.472 |
| C06 |
C07 |
1.281 |
1.174 |
| C07 |
C08 |
1.556 |
1.472 |
| C08 |
O09 |
1.437 |
1.429 |
| N11 |
O12 |
1.367 |
1.414 |
| N11 |
C10 |
1.406 |
1.277 |
| O09 |
C10 |
1.368 |
1.353 |
| O12 |
C13 |
1.432 |
1.442 |
| C10 |
C14 |
1.396 |
1.517 |
| C13 |
C14 |
1.449 |
1.546 |
| C01 |
H101 |
1.100 |
1.090 |
| C01 |
H201 |
1.100 |
1.091 |
| C01 |
H301 |
1.100 |
1.090 |
| C03 |
H103 |
1.100 |
1.090 |
| C03 |
H203 |
1.100 |
1.089 |
| C03 |
H303 |
1.100 |
1.090 |
| C04 |
H104 |
1.100 |
1.090 |
| C04 |
H204 |
1.100 |
1.090 |
| C04 |
H304 |
1.100 |
1.090 |
| C05 |
H105 |
1.100 |
1.090 |
| C05 |
H205 |
1.099 |
1.090 |
| C08 |
H108 |
1.100 |
1.090 |
| C08 |
H208 |
1.100 |
1.089 |
| C13 |
H113 |
1.100 |
1.090 |
| C13 |
H213 |
1.100 |
1.090 |
| C14 |
H114 |
1.100 |
1.090 |
| C14 |
H214 |
1.100 |
1.090 |
Bond Angles for IXO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
N02 |
C04 |
109.4 |
109.5 |
| C03 |
N02 |
C05 |
111.1 |
109.5 |
| N02 |
C01 |
H101 |
109.5 |
109.5 |
| N02 |
C01 |
H201 |
109.5 |
109.5 |
| N02 |
C01 |
H301 |
109.5 |
109.5 |
| C04 |
N02 |
C05 |
108.2 |
109.5 |
| N02 |
C04 |
H104 |
109.5 |
109.4 |
| N02 |
C04 |
H204 |
109.5 |
109.4 |
| N02 |
C04 |
H304 |
109.5 |
109.5 |
| N02 |
C05 |
C06 |
117.8 |
109.5 |
| N02 |
C05 |
H105 |
107.4 |
109.5 |
| N02 |
C05 |
H205 |
107.4 |
109.5 |
| C05 |
C06 |
C07 |
177.9 |
180.0 |
| C06 |
C05 |
H105 |
107.3 |
109.4 |
| C06 |
C05 |
H205 |
107.3 |
109.4 |
| C06 |
C07 |
C08 |
175.3 |
180.0 |
| C07 |
C08 |
O09 |
117.1 |
109.5 |
| C07 |
C08 |
H108 |
107.6 |
109.4 |
| C07 |
C08 |
H208 |
107.5 |
109.5 |
| C08 |
O09 |
C10 |
120.4 |
117.0 |
| O09 |
C08 |
H108 |
107.5 |
109.5 |
| O09 |
C08 |
H208 |
107.6 |
109.5 |
| N11 |
O12 |
C13 |
107.7 |
107.6 |
| N11 |
C10 |
C14 |
110.1 |
108.5 |
| O09 |
C10 |
C14 |
125.2 |
125.8 |
| O12 |
C13 |
C14 |
106.2 |
101.6 |
| O12 |
C13 |
H113 |
110.3 |
111.0 |
| O12 |
C13 |
H213 |
110.3 |
111.0 |
| C10 |
C14 |
C13 |
104.5 |
102.5 |
| C10 |
C14 |
H114 |
110.7 |
110.8 |
| C10 |
C14 |
H214 |
110.7 |
110.8 |
| C14 |
C13 |
H113 |
110.3 |
111.1 |
| C14 |
C13 |
H213 |
110.3 |
110.8 |
| C13 |
C14 |
H114 |
110.7 |
110.8 |
| C13 |
C14 |
H214 |
110.7 |
110.7 |
| H101 |
C01 |
H201 |
109.5 |
109.5 |
| H101 |
C01 |
H301 |
109.5 |
109.5 |
| H201 |
C01 |
H301 |
109.4 |
109.5 |
| H103 |
C03 |
H203 |
109.4 |
109.4 |
| H103 |
C03 |
H303 |
109.5 |
109.5 |
| H203 |
C03 |
H303 |
109.5 |
109.5 |
| H104 |
C04 |
H204 |
109.4 |
109.5 |
| H104 |
C04 |
H304 |
109.5 |
109.5 |
| H204 |
C04 |
H304 |
109.5 |
109.6 |
| H105 |
C05 |
H205 |
109.5 |
109.5 |
| H108 |
C08 |
H208 |
109.5 |
109.5 |
| H113 |
C13 |
H213 |
109.5 |
110.9 |
| H114 |
C14 |
H214 |
109.5 |
110.9 |
Torsion Angles for IXO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
N02 |
C01 |
H101 |
180.0 |
300.0 |
| C03 |
N02 |
C01 |
H201 |
300.0 |
60.0 |
| C03 |
N02 |
C01 |
H301 |
60.0 |
180.0 |
| C04 |
N02 |
C03 |
C05 |
240.7 |
120.0 |
| C03 |
N02 |
C04 |
H104 |
180.0 |
180.0 |
| C03 |
N02 |
C04 |
H204 |
300.0 |
300.0 |
| C03 |
N02 |
C04 |
H304 |
60.0 |
60.1 |
| C03 |
N02 |
C05 |
C06 |
292.8 |
300.0 |
| C03 |
N02 |
C05 |
H105 |
54.0 |
60.0 |
| C03 |
N02 |
C05 |
H205 |
171.6 |
180.0 |
| H101 |
C01 |
N02 |
H201 |
240.0 |
240.0 |
| H101 |
C01 |
N02 |
H301 |
120.0 |
120.0 |
| H201 |
C01 |
N02 |
H301 |
240.0 |
240.0 |
| C03 |
N02 |
C04 |
C05 |
121.1 |
240.0 |
| C04 |
N02 |
C01 |
H101 |
59.6 |
60.0 |
| C04 |
N02 |
C01 |
H201 |
179.6 |
180.0 |
| C04 |
N02 |
C01 |
H301 |
299.6 |
300.0 |
| C04 |
N02 |
C05 |
C06 |
52.9 |
180.0 |
| C04 |
N02 |
C05 |
H105 |
174.1 |
300.0 |
| C04 |
N02 |
C05 |
H205 |
291.7 |
60.0 |
| H104 |
C04 |
N02 |
H204 |
240.0 |
240.0 |
| H104 |
C04 |
N02 |
H304 |
120.0 |
120.0 |
| H204 |
C04 |
N02 |
H304 |
240.0 |
239.9 |
| C03 |
N02 |
C05 |
C04 |
239.9 |
120.0 |
| C05 |
N02 |
C01 |
H101 |
300.9 |
180.0 |
| C05 |
N02 |
C01 |
H201 |
60.9 |
300.0 |
| C05 |
N02 |
C01 |
H301 |
180.9 |
60.0 |
| C05 |
N02 |
C04 |
H104 |
58.9 |
300.0 |
| C05 |
N02 |
C04 |
H204 |
178.9 |
60.0 |
| C05 |
N02 |
C04 |
H304 |
298.9 |
180.1 |
| N02 |
C05 |
C06 |
C07 |
144.4 |
346.2 |
| C06 |
C05 |
N02 |
H105 |
238.8 |
240.0 |
| C06 |
C05 |
N02 |
H205 |
121.2 |
120.0 |
| H105 |
C05 |
N02 |
H205 |
242.4 |
240.0 |
| N02 |
C05 |
C06 |
H105 |
121.2 |
120.0 |
| N02 |
C05 |
C06 |
H205 |
238.8 |
240.0 |
| C05 |
C06 |
C07 |
C08 |
276.5 |
180.0 |
| H105 |
C05 |
C06 |
H205 |
117.6 |
120.0 |
| C07 |
C06 |
C05 |
H105 |
23.2 |
226.1 |
| C07 |
C06 |
C05 |
H205 |
265.6 |
106.2 |
| C06 |
C07 |
C08 |
O09 |
194.9 |
13.9 |
| C06 |
C07 |
C08 |
H108 |
316.0 |
133.8 |
| C06 |
C07 |
C08 |
H208 |
73.8 |
253.8 |
| C07 |
C08 |
O09 |
C10 |
46.6 |
180.0 |
| O09 |
C08 |
C07 |
H108 |
238.9 |
240.0 |
| O09 |
C08 |
C07 |
H208 |
121.1 |
120.0 |
| H108 |
C08 |
C07 |
H208 |
242.2 |
240.0 |
| C07 |
C08 |
O09 |
H108 |
121.1 |
120.0 |
| C07 |
C08 |
O09 |
H208 |
238.9 |
240.0 |
| C08 |
O09 |
C10 |
C14 |
203.5 |
180.0 |
| H108 |
C08 |
O09 |
H208 |
117.8 |
120.0 |
| O12 |
N11 |
C10 |
C14 |
0.2 |
0.5 |
| N11 |
O12 |
C13 |
C14 |
19.2 |
24.9 |
| N11 |
O12 |
C13 |
H113 |
138.6 |
143.2 |
| N11 |
O12 |
C13 |
H213 |
259.7 |
267.1 |
| O09 |
C10 |
N11 |
C14 |
179.4 |
179.8 |
| N11 |
C10 |
C14 |
C13 |
11.5 |
15.0 |
| N11 |
C10 |
C14 |
H114 |
130.7 |
133.3 |
| N11 |
C10 |
C14 |
H214 |
252.3 |
256.8 |
| C10 |
O09 |
C08 |
H108 |
285.5 |
60.1 |
| C10 |
O09 |
C08 |
H208 |
167.7 |
300.0 |
| N11 |
C10 |
O09 |
C14 |
180.6 |
180.2 |
| O09 |
C10 |
C14 |
C13 |
192.1 |
195.2 |
| O09 |
C10 |
C14 |
H114 |
311.3 |
313.5 |
| O09 |
C10 |
C14 |
H214 |
72.9 |
77.0 |
| C10 |
C14 |
C13 |
O12 |
341.6 |
336.3 |
| C14 |
C13 |
O12 |
H113 |
240.5 |
241.7 |
| C14 |
C13 |
O12 |
H213 |
119.5 |
117.8 |
| O12 |
C13 |
C14 |
H114 |
222.3 |
218.1 |
| O12 |
C13 |
C14 |
H214 |
100.8 |
94.6 |
| H113 |
C13 |
O12 |
H213 |
239.0 |
236.1 |
| O12 |
C13 |
C14 |
C10 |
341.6 |
336.3 |
| C10 |
C14 |
C13 |
H113 |
222.1 |
218.2 |
| C10 |
C14 |
C13 |
H213 |
101.1 |
94.4 |
| C13 |
C14 |
C10 |
H114 |
240.8 |
241.7 |
| C13 |
C14 |
C10 |
H214 |
119.2 |
118.2 |
| H114 |
C14 |
C10 |
H214 |
238.4 |
236.5 |
| O12 |
C13 |
C14 |
H113 |
119.5 |
118.1 |
| O12 |
C13 |
C14 |
H213 |
240.5 |
242.0 |
| C10 |
C14 |
C13 |
H114 |
119.2 |
118.3 |
| C10 |
C14 |
C13 |
H214 |
240.8 |
241.7 |
| H113 |
C13 |
C14 |
H213 |
121.0 |
123.8 |
| H114 |
C14 |
C13 |
H214 |
121.6 |
123.5 |
| N02 |
C01 |
H101 |
H201 |
120.0 |
120.0 |
| N02 |
C01 |
H101 |
H301 |
240.0 |
240.0 |
| H201 |
C01 |
H101 |
H301 |
120.0 |
120.0 |
| N02 |
C01 |
H201 |
H101 |
240.0 |
240.0 |
| N02 |
C01 |
H201 |
H301 |
120.0 |
120.0 |
| H101 |
C01 |
H201 |
H301 |
240.0 |
240.0 |
| N02 |
C01 |
H301 |
H101 |
120.0 |
120.0 |
| N02 |
C01 |
H301 |
H201 |
240.0 |
240.0 |
| H101 |
C01 |
H301 |
H201 |
120.0 |
120.0 |
| H103 |
C03 |
N02 |
C04 |
301.4 |
300.0 |
| H103 |
C03 |
N02 |
C05 |
60.8 |
180.0 |
| H203 |
C03 |
H103 |
H303 |
120.0 |
120.0 |
| H203 |
C03 |
N02 |
C04 |
61.4 |
60.0 |
| H203 |
C03 |
N02 |
C05 |
180.7 |
300.0 |
| H103 |
C03 |
H203 |
H303 |
240.0 |
240.0 |
| H303 |
C03 |
N02 |
C04 |
181.4 |
180.0 |
| H303 |
C03 |
N02 |
C05 |
300.8 |
60.0 |
| H103 |
C03 |
H303 |
H203 |
120.0 |
120.0 |
| H104 |
C04 |
N02 |
C05 |
58.9 |
300.0 |
| N02 |
C04 |
H104 |
H204 |
120.0 |
119.9 |
| N02 |
C04 |
H104 |
H304 |
240.0 |
240.0 |
| H204 |
C04 |
H104 |
H304 |
120.0 |
120.1 |
| H204 |
C04 |
N02 |
C05 |
178.9 |
60.0 |
| N02 |
C04 |
H204 |
H104 |
240.0 |
240.1 |
| N02 |
C04 |
H204 |
H304 |
120.0 |
120.0 |
| H104 |
C04 |
H204 |
H304 |
240.0 |
240.0 |
| H304 |
C04 |
N02 |
C05 |
298.9 |
180.1 |
| N02 |
C04 |
H304 |
H104 |
120.0 |
119.9 |
| N02 |
C04 |
H304 |
H204 |
240.0 |
240.0 |
| H104 |
C04 |
H304 |
H204 |
120.0 |
120.0 |
| N02 |
C05 |
H105 |
C06 |
232.5 |
240.0 |
| N02 |
C05 |
H105 |
H205 |
116.3 |
120.1 |
| H105 |
C05 |
C06 |
C07 |
23.2 |
226.1 |
| C06 |
C05 |
H105 |
H205 |
243.8 |
240.1 |
| N02 |
C05 |
H205 |
C06 |
127.5 |
120.0 |
| N02 |
C05 |
H205 |
H105 |
243.7 |
239.9 |
| H205 |
C05 |
C06 |
C07 |
265.6 |
106.2 |
| C06 |
C05 |
H205 |
H105 |
116.2 |
119.9 |
| C07 |
C08 |
H108 |
O09 |
233.1 |
240.0 |
| C07 |
C08 |
H108 |
H208 |
116.5 |
120.0 |
| H108 |
C08 |
O09 |
C10 |
285.5 |
60.1 |
| O09 |
C08 |
H108 |
H208 |
243.4 |
240.0 |
| C07 |
C08 |
H208 |
O09 |
126.9 |
120.0 |
| C07 |
C08 |
H208 |
H108 |
243.5 |
240.0 |
| H208 |
C08 |
O09 |
C10 |
167.7 |
300.0 |
| O09 |
C08 |
H208 |
H108 |
116.5 |
120.0 |
| O12 |
C13 |
H113 |
C14 |
243.1 |
247.7 |
| O12 |
C13 |
H113 |
H213 |
121.5 |
123.9 |
| C14 |
C13 |
H113 |
H213 |
238.5 |
236.3 |
| H113 |
C13 |
C14 |
H114 |
102.8 |
99.9 |
| H113 |
C13 |
C14 |
H214 |
341.3 |
336.5 |
| O12 |
C13 |
H213 |
C14 |
117.0 |
112.1 |
| O12 |
C13 |
H213 |
H113 |
238.5 |
236.1 |
| C14 |
C13 |
H213 |
H113 |
121.5 |
123.9 |
| H213 |
C13 |
C14 |
H114 |
341.8 |
336.1 |
| H213 |
C13 |
C14 |
H214 |
220.3 |
212.6 |
| C10 |
C14 |
H114 |
C13 |
244.6 |
246.9 |
| C10 |
C14 |
H114 |
H214 |
122.3 |
123.5 |
| H114 |
C14 |
C13 |
H113 |
102.8 |
99.9 |
| H114 |
C14 |
C13 |
H213 |
341.8 |
336.1 |
| C13 |
C14 |
H114 |
H214 |
237.7 |
236.7 |
| C10 |
C14 |
H214 |
C13 |
115.4 |
113.1 |
| C10 |
C14 |
H214 |
H114 |
237.7 |
236.5 |
| H214 |
C14 |
C13 |
H113 |
341.3 |
336.5 |
| H214 |
C14 |
C13 |
H213 |
220.3 |
212.6 |
| C13 |
C14 |
H214 |
H114 |
122.3 |
123.4 |