PDB Chemical Component IWD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IWD
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.420 |
1.346 |
N1 |
C6 |
1.350 |
1.368 |
N1 |
C7 |
1.477 |
1.465 |
C2 |
O2 |
1.207 |
1.216 |
C2 |
N3 |
1.414 |
1.345 |
N3 |
C4 |
1.370 |
1.348 |
N3 |
H3 |
1.020 |
0.970 |
C4 |
O4 |
1.217 |
1.217 |
C4 |
C5 |
1.526 |
1.417 |
C5 |
I5 |
2.077 |
2.094 |
C5 |
C6 |
1.347 |
1.350 |
C6 |
H6 |
1.103 |
1.080 |
C7 |
C8 |
1.519 |
1.529 |
C7 |
H71 |
1.115 |
1.089 |
C7 |
H72 |
1.114 |
1.090 |
C8 |
N8 |
1.504 |
1.469 |
C8 |
C9 |
1.538 |
1.508 |
C8 |
H8 |
1.115 |
1.089 |
N8 |
H81 |
1.021 |
1.009 |
N8 |
H82 |
1.020 |
1.009 |
C9 |
O91 |
1.221 |
1.208 |
C9 |
O92 |
1.287 |
1.342 |
O92 |
H92O |
0.950 |
0.967 |
Bond Angles for IWD
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
122.1 |
120.6 |
C2 |
N1 |
C7 |
120.5 |
119.7 |
N1 |
C2 |
O2 |
124.6 |
119.5 |
N1 |
C2 |
N3 |
113.7 |
120.9 |
C6 |
N1 |
C7 |
117.2 |
119.7 |
N1 |
C6 |
C5 |
124.1 |
119.7 |
N1 |
C6 |
H6 |
118.1 |
120.1 |
N1 |
C7 |
C8 |
113.6 |
109.4 |
N1 |
C7 |
H71 |
110.7 |
109.5 |
N1 |
C7 |
H72 |
110.7 |
109.5 |
O2 |
C2 |
N3 |
121.7 |
119.6 |
C2 |
N3 |
C4 |
128.3 |
120.3 |
C2 |
N3 |
H3 |
117.7 |
119.8 |
C4 |
N3 |
H3 |
114.0 |
119.8 |
N3 |
C4 |
O4 |
122.5 |
120.3 |
N3 |
C4 |
C5 |
113.2 |
119.4 |
O4 |
C4 |
C5 |
124.3 |
120.3 |
C4 |
C5 |
I5 |
120.5 |
120.4 |
C4 |
C5 |
C6 |
118.6 |
119.1 |
I5 |
C5 |
C6 |
120.9 |
120.5 |
C5 |
C6 |
H6 |
117.8 |
120.1 |
C8 |
C7 |
H71 |
110.7 |
109.6 |
C8 |
C7 |
H72 |
110.7 |
109.5 |
C7 |
C8 |
N8 |
108.9 |
109.5 |
C7 |
C8 |
C9 |
115.2 |
109.4 |
C7 |
C8 |
H8 |
106.3 |
109.6 |
H71 |
C7 |
H72 |
99.7 |
109.5 |
N8 |
C8 |
C9 |
110.7 |
109.5 |
N8 |
C8 |
H8 |
111.2 |
109.5 |
C8 |
N8 |
H81 |
108.9 |
106.7 |
C8 |
N8 |
H82 |
112.4 |
106.7 |
C9 |
C8 |
H8 |
104.4 |
109.5 |
C8 |
C9 |
O91 |
119.1 |
120.0 |
C8 |
C9 |
O92 |
114.3 |
120.0 |
H81 |
N8 |
H82 |
112.4 |
106.8 |
O91 |
C9 |
O92 |
126.6 |
120.1 |
C9 |
O92 |
H92O |
114.2 |
120.0 |
Torsion Angles for IWD
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
C7 |
184.5 |
179.6 |
C2 |
N1 |
C6 |
C5 |
357.5 |
0.3 |
C2 |
N1 |
C6 |
H6 |
177.5 |
180.3 |
C2 |
N1 |
C7 |
C8 |
291.1 |
269.7 |
C2 |
N1 |
C7 |
H71 |
56.3 |
149.6 |
C2 |
N1 |
C7 |
H72 |
165.9 |
29.6 |
O2 |
C2 |
N1 |
N3 |
180.2 |
180.6 |
N1 |
C2 |
N3 |
C4 |
359.5 |
0.6 |
N1 |
C2 |
N3 |
H3 |
179.6 |
180.3 |
C2 |
N1 |
C6 |
C7 |
175.6 |
180.4 |
C6 |
N1 |
C2 |
O2 |
181.6 |
180.0 |
C6 |
N1 |
C2 |
N3 |
1.5 |
359.4 |
C6 |
N1 |
C7 |
C8 |
106.8 |
90.1 |
C6 |
N1 |
C7 |
H71 |
232.0 |
330.0 |
C6 |
N1 |
C7 |
H72 |
341.6 |
210.0 |
C4 |
C5 |
C6 |
N1 |
2.2 |
359.9 |
I5 |
C5 |
C6 |
N1 |
179.5 |
180.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.1 |
C2 |
N1 |
C7 |
C6 |
184.3 |
179.6 |
C7 |
N1 |
C2 |
O2 |
357.1 |
0.4 |
C7 |
N1 |
C2 |
N3 |
176.9 |
179.8 |
C7 |
N1 |
C6 |
C5 |
181.9 |
180.0 |
C7 |
N1 |
C6 |
H6 |
1.9 |
359.9 |
C8 |
C7 |
N1 |
H71 |
234.8 |
120.1 |
C8 |
C7 |
N1 |
H72 |
125.2 |
240.1 |
N1 |
C7 |
C8 |
N8 |
290.2 |
300.0 |
N1 |
C7 |
C8 |
C9 |
165.2 |
180.0 |
N1 |
C7 |
C8 |
H8 |
50.2 |
60.0 |
H71 |
C7 |
N1 |
H72 |
250.5 |
120.0 |
O2 |
C2 |
N1 |
C6 |
181.6 |
180.0 |
O2 |
C2 |
N1 |
C7 |
357.1 |
0.4 |
N1 |
C2 |
O2 |
N3 |
179.8 |
179.4 |
O2 |
C2 |
N3 |
C4 |
179.4 |
180.0 |
O2 |
C2 |
N3 |
H3 |
359.4 |
359.7 |
N3 |
C2 |
N1 |
C6 |
1.5 |
359.4 |
N3 |
C2 |
N1 |
C7 |
176.9 |
179.8 |
N1 |
C2 |
N3 |
O2 |
180.2 |
180.6 |
C4 |
N3 |
C2 |
H3 |
180.0 |
180.3 |
C2 |
N3 |
C4 |
O4 |
179.1 |
179.7 |
C2 |
N3 |
C4 |
C5 |
0.3 |
359.7 |
C2 |
N3 |
C4 |
H3 |
180.0 |
179.7 |
O4 |
C4 |
N3 |
C5 |
178.8 |
180.0 |
N3 |
C4 |
C5 |
I5 |
181.7 |
180.0 |
N3 |
C4 |
C5 |
C6 |
358.9 |
0.0 |
C2 |
N3 |
H3 |
C4 |
180.0 |
180.3 |
H3 |
N3 |
C4 |
O4 |
359.1 |
360.0 |
H3 |
N3 |
C4 |
C5 |
180.2 |
180.0 |
O4 |
C4 |
N3 |
H3 |
359.1 |
360.0 |
N3 |
C4 |
O4 |
C5 |
181.3 |
180.0 |
O4 |
C4 |
C5 |
I5 |
2.9 |
360.0 |
O4 |
C4 |
C5 |
C6 |
180.1 |
180.0 |
N1 |
C6 |
C5 |
C4 |
2.2 |
359.9 |
C5 |
C4 |
N3 |
H3 |
180.2 |
180.0 |
N3 |
C4 |
C5 |
O4 |
178.8 |
180.0 |
I5 |
C5 |
C4 |
C6 |
182.8 |
179.9 |
C4 |
C5 |
C6 |
H6 |
182.3 |
180.0 |
N1 |
C6 |
C5 |
I5 |
179.5 |
180.0 |
C4 |
C5 |
I5 |
C6 |
177.2 |
180.1 |
I5 |
C5 |
C6 |
H6 |
359.5 |
0.1 |
C5 |
C6 |
N1 |
C7 |
181.9 |
180.0 |
N1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
I5 |
182.8 |
179.9 |
H6 |
C6 |
N1 |
C7 |
1.9 |
359.9 |
N1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
N1 |
C7 |
C8 |
H71 |
125.2 |
240.0 |
N1 |
C7 |
C8 |
H72 |
234.8 |
120.0 |
H71 |
C7 |
C8 |
H72 |
109.6 |
240.0 |
N8 |
C8 |
C7 |
C9 |
125.0 |
120.0 |
N8 |
C8 |
C7 |
H8 |
240.1 |
240.0 |
C7 |
C8 |
N8 |
H81 |
180.0 |
300.1 |
C7 |
C8 |
N8 |
H82 |
54.8 |
53.9 |
C9 |
C8 |
C7 |
H8 |
115.1 |
120.0 |
C7 |
C8 |
C9 |
O91 |
125.9 |
90.0 |
C7 |
C8 |
C9 |
O92 |
308.1 |
269.9 |
N1 |
C7 |
H71 |
C8 |
233.1 |
120.0 |
N1 |
C7 |
H71 |
H72 |
116.6 |
240.0 |
C8 |
C7 |
H71 |
H72 |
243.4 |
120.0 |
H71 |
C7 |
C8 |
N8 |
165.0 |
60.0 |
H71 |
C7 |
C8 |
C9 |
40.0 |
300.0 |
H71 |
C7 |
C8 |
H8 |
285.0 |
180.0 |
N1 |
C7 |
H72 |
C8 |
126.9 |
240.1 |
N1 |
C7 |
H72 |
H71 |
243.4 |
120.0 |
C8 |
C7 |
H72 |
H71 |
116.6 |
239.9 |
H72 |
C7 |
C8 |
N8 |
55.5 |
180.0 |
H72 |
C7 |
C8 |
C9 |
290.5 |
60.1 |
H72 |
C7 |
C8 |
H8 |
175.4 |
300.0 |
N8 |
C8 |
C7 |
H71 |
165.0 |
60.0 |
N8 |
C8 |
C7 |
H72 |
55.5 |
180.0 |
C7 |
C8 |
N8 |
C9 |
232.4 |
240.1 |
C7 |
C8 |
N8 |
H8 |
116.8 |
120.1 |
C9 |
C8 |
N8 |
H8 |
244.5 |
240.0 |
N8 |
C8 |
C9 |
O91 |
1.9 |
330.1 |
N8 |
C8 |
C9 |
O92 |
184.0 |
150.0 |
H81 |
N8 |
C8 |
H82 |
125.2 |
246.2 |
C9 |
C8 |
C7 |
H71 |
40.0 |
300.0 |
C9 |
C8 |
C7 |
H72 |
290.5 |
60.1 |
C7 |
C8 |
C9 |
N8 |
124.1 |
120.0 |
C7 |
C8 |
C9 |
H8 |
243.8 |
239.9 |
N8 |
C8 |
C9 |
H8 |
119.7 |
120.0 |
C9 |
C8 |
N8 |
H81 |
307.6 |
60.0 |
C9 |
C8 |
N8 |
H82 |
182.4 |
173.8 |
O91 |
C9 |
C8 |
O92 |
177.9 |
180.1 |
C8 |
C9 |
O92 |
H92O |
180.1 |
180.1 |
H8 |
C8 |
C7 |
H71 |
285.0 |
180.0 |
H8 |
C8 |
C7 |
H72 |
175.4 |
300.0 |
C7 |
C8 |
H8 |
N8 |
241.6 |
240.0 |
C7 |
C8 |
H8 |
C9 |
122.2 |
120.0 |
N8 |
C8 |
H8 |
C9 |
240.6 |
240.0 |
H8 |
C8 |
N8 |
H81 |
63.1 |
180.0 |
H8 |
C8 |
N8 |
H82 |
297.9 |
293.8 |
H8 |
C8 |
C9 |
O91 |
242.1 |
210.1 |
H8 |
C8 |
C9 |
O92 |
64.2 |
30.0 |
H81 |
N8 |
C8 |
C9 |
307.6 |
60.0 |
H81 |
N8 |
C8 |
H8 |
63.1 |
180.0 |
C8 |
N8 |
H81 |
H82 |
234.8 |
113.7 |
H82 |
N8 |
C8 |
C9 |
182.4 |
173.8 |
H82 |
N8 |
C8 |
H8 |
297.9 |
293.8 |
C8 |
N8 |
H82 |
H81 |
123.3 |
246.2 |
O91 |
C9 |
C8 |
H8 |
242.1 |
210.1 |
C8 |
C9 |
O91 |
O92 |
182.4 |
179.9 |
O91 |
C9 |
O92 |
H92O |
2.4 |
360.0 |
O92 |
C9 |
C8 |
H8 |
64.2 |
30.0 |
C8 |
C9 |
O92 |
O91 |
177.7 |
180.1 |