PDB Chemical Component IVV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IVV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1P P 1.492 1.480
CA4 P 1.821 1.822
O2P P 1.500 1.610
P CP 1.794 1.823
CA1 C1 1.553 1.507
N1 C1 1.316 1.348
C1 O1 1.241 1.213
N1 CA2 1.508 1.465
N1 HN1 0.999 0.970
CA2 C2 1.515 1.506
O2 C2 1.276 1.213
C2 N3 1.337 1.348
N4 C3 1.352 1.348
CA3 C3 1.569 1.507
C3 O3 1.225 1.213
N3 CA3 1.470 1.465
N3 HN3 1.000 0.970
CA4 N4 1.443 1.466
N4 HN4 1.000 0.970
C5 O4 1.247 1.209
CP C5 1.524 1.507
C5 O6 1.421 1.343
O6 C6 1.414 1.452
C7 C6 1.513 1.530
C6 H6 1.100 1.090
C6 H6A 1.100 1.090
C7 H7 1.100 1.090
C7 H7A 1.100 1.090
C7 H7B 1.100 1.090
CP HP 1.100 1.090
CP HPA 1.100 1.090
CB1 CG11 1.511 1.530
CG11 HG11 1.100 1.090
CG11 HG1A 1.100 1.089
CG11 HG1B 1.099 1.090
CG12 CB2 1.547 1.531
CG12 HG12 1.100 1.090
CG12 HG1C 1.100 1.090
CG12 HG1D 1.100 1.090
CB3 CG13 1.545 1.531
CG13 HG13 1.100 1.090
CG13 HG1E 1.100 1.090
CG13 HG1F 1.100 1.090
CD1 CG4 1.521 1.530
CD1 HD14 1.099 1.089
CD1 HD1A 1.100 1.091
CD1 HD1B 1.100 1.090
CG21 CB1 1.518 1.530
CG21 HG21 1.100 1.091
CG21 HG2A 1.100 1.090
CG21 HG2B 1.100 1.090
CG22 CB2 1.536 1.531
CG22 HG22 1.100 1.090
CG22 HG2C 1.100 1.091
CG22 HG2D 1.099 1.090
CG23 CB3 1.495 1.531
CG23 HG23 1.100 1.090
CG23 HG2E 1.100 1.090
CG23 HG2F 1.100 1.090
CG4 CD2 1.521 1.530
CD2 HD24 1.100 1.091
CD2 HD2A 1.100 1.090
CD2 HD2B 1.100 1.090
O2P HO2P 0.950 0.967
CA1 CB1 1.510 1.530
CA1 HA1 1.100 1.090
CA1 HA1A 1.101 1.090
CB2 CA2 1.544 1.530
CA2 HA2 1.100 1.090
CA3 CB3 1.538 1.530
CA3 HA3 1.100 1.089
CB4 CA4 1.577 1.530
CA4 HA4 1.100 1.091
CB1 HB1 1.100 1.090
CB2 HB2 1.100 1.090
CB3 HB3 1.100 1.090
CG4 CB4 1.581 1.530
CB4 HB4 1.101 1.090
CB4 HB4A 1.100 1.090
CG4 HG4 1.100 1.090

Bond Angles for IVV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA4 P CP 108.6 109.5
P CP C5 115.2 109.5
P CP HP 107.6 109.5
P CP HPA 107.6 109.5
CA1 C1 O1 117.0 120.0
CB1 CA1 C1 110.4 109.5
C1 CA1 HA1 109.2 109.5
C1 CA1 HA1A 109.2 109.5
CA2 N1 HN1 121.8 120.0
N1 CA2 C2 108.8 109.5
N1 CA2 HA2 113.3 109.5
CA2 C2 N3 112.5 120.0
C2 CA2 HA2 107.1 109.5
O2 C2 N3 127.0 120.0
C2 N3 CA3 118.6 120.0
C2 N3 HN3 120.7 120.0
CA3 C3 O3 117.8 120.0
N3 CA3 C3 104.4 109.4
C3 CA3 CB3 110.7 109.4
C3 CA3 HA3 113.7 109.5
CA3 N3 HN3 120.7 120.0
N3 CA3 CB3 114.2 109.5
N3 CA3 HA3 110.2 109.5
CA4 N4 HN4 119.2 120.0
C5 O6 C6 119.7 117.0
O6 C6 H6 109.5 109.5
O6 C6 H6A 109.5 109.5
C7 C6 H6 109.5 109.4
C7 C6 H6A 109.5 109.5
H6 C6 H6A 109.5 109.5
H7 C7 H7A 109.4 109.5
H7 C7 H7B 109.5 109.5
H7A C7 H7B 109.5 109.4
HP CP HPA 111.3 109.5
CB1 CG11 HG11 109.5 109.5
CB1 CG11 HG1A 109.5 109.5
CB1 CG11 HG1B 109.5 109.4
CA1 CB1 CG11 101.1 109.5
CG11 CB1 HB1 119.9 109.5
HG11 CG11 HG1A 109.4 109.5
HG11 CG11 HG1B 109.5 109.4
HG1A CG11 HG1B 109.5 109.5
CG12 CB2 HB2 113.2 109.5
HG12 CG12 HG1C 109.5 109.5
HG12 CG12 HG1D 109.5 109.5
HG1C CG12 HG1D 109.5 109.5
CB3 CG13 HG13 109.5 109.5
CB3 CG13 HG1E 109.5 109.4
CB3 CG13 HG1F 109.4 109.4
CA3 CB3 CG13 109.4 109.5
CG13 CB3 HB3 111.9 109.5
HG13 CG13 HG1E 109.5 109.5
HG13 CG13 HG1F 109.5 109.5
HG1E CG13 HG1F 109.5 109.5
CD1 CG4 CD2 111.8 109.4
CD1 CG4 HG4 111.8 109.5
HD14 CD1 HD1A 109.5 109.4
HD14 CD1 HD1B 109.5 109.5
HD1A CD1 HD1B 109.5 109.5
CG21 CB1 HB1 109.2 109.4
HG21 CG21 HG2A 109.4 109.4
HG21 CG21 HG2B 109.5 109.4
HG2A CG21 HG2B 109.5 109.5
CG22 CB2 HB2 111.4 109.4
HG22 CG22 HG2C 109.4 109.5
HG22 CG22 HG2D 109.5 109.5
HG2C CG22 HG2D 109.5 109.5
CG23 CB3 HB3 109.9 109.5
HG23 CG23 HG2E 109.4 109.6
HG23 CG23 HG2F 109.5 109.4
HG2E CG23 HG2F 109.5 109.5
CG4 CD2 HD24 109.5 109.5
CG4 CD2 HD2A 109.5 109.5
CG4 CD2 HD2B 109.5 109.5
CD2 CG4 HG4 103.3 109.4
HD24 CD2 HD2A 109.5 109.4
HD24 CD2 HD2B 109.5 109.4
HD2A CD2 HD2B 109.5 109.5
CB1 CA1 HA1 109.2 109.5
CB1 CA1 HA1A 109.2 109.4
CA1 CB1 HB1 110.6 109.4
HA1 CA1 HA1A 109.8 109.5
CB2 CA2 HA2 110.5 109.4
CB3 CA3 HA3 103.8 109.5
CA3 CB3 HB3 107.4 109.5
CB4 CA4 HA4 106.9 109.5
CG4 CB4 HB4 108.4 109.4
CG4 CB4 HB4A 108.4 109.5
HB4 CB4 HB4A 110.5 109.5

Torsion Angles for IVV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1P P CP HP 318.7 62.3
O1P P CP HPA 78.7 182.3
CA4 P CP C5 82.9 182.3
CA4 P CP HP 202.9 302.3
CA4 P CP HPA 322.9 62.3
P CA4 N4 HN4 67.1 75.0
O2P P CP HP 86.2 182.3
O2P P CP HPA 206.2 302.3
HP CP P HPA 240.0 240.0
C1 CA1 CB1 CG11 66.3 175.0
CB1 CA1 C1 HA1 240.0 240.0
CB1 CA1 C1 HA1A 120.0 120.0
C1 CA1 CB1 HB1 298.3 55.0
HA1 CA1 C1 HA1A 240.0 240.0
N1 C1 CA1 HA1 331.2 300.0
N1 C1 CA1 HA1A 91.2 60.0
CB1 CA1 C1 O1 33.0 360.0
O1 C1 CA1 HA1 153.0 120.0
O1 C1 CA1 HA1A 273.0 240.0
N1 CA2 C2 N3 171.0 153.8
C2 CA2 N1 HA2 241.0 240.0
CB2 CA2 N1 HA2 120.9 120.0
HN1 N1 CA2 C2 64.1 25.0
HN1 N1 CA2 HA2 183.2 145.0
C2 CA2 N1 HN1 64.1 25.0
N1 CA2 C2 HA2 122.9 120.0
O2 C2 CA2 N3 174.4 180.0
CA2 C2 N3 CA3 176.2 185.2
CA2 C2 N3 HN3 356.2 5.2
CB2 CA2 C2 HA2 238.8 240.0
CA2 C2 O2 N3 186.4 180.0
O2 C2 CA2 HA2 222.6 213.9
O2 C2 N3 CA3 2.2 5.2
O2 C2 N3 HN3 182.2 185.2
N3 C2 CA2 HA2 48.1 33.8
C2 N3 CA3 C3 226.5 205.0
CA3 N3 C2 HN3 180.0 180.0
C2 N3 CA3 CB3 105.5 85.0
C2 N3 CA3 HA3 349.1 325.0
N4 C3 CA3 HA3 330.7 60.0
C3 CA3 N3 HN3 46.5 25.0
N3 CA3 C3 CB3 236.6 240.0
N3 CA3 C3 HA3 120.2 120.0
C3 CA3 CB3 CG13 68.3 180.0
CB3 CA3 C3 HA3 243.6 240.0
C3 CA3 CB3 HB3 306.6 60.0
N3 CA3 C3 O3 272.2 0.0
O3 C3 CA3 CB3 35.6 120.0
O3 C3 CA3 HA3 152.1 240.1
C2 N3 CA3 HN3 180.0 180.0
C3 CA3 N3 CB3 121.1 119.9
C3 CA3 N3 HA3 237.5 240.0
N3 CA3 CB3 CG13 185.8 300.0
CB3 CA3 N3 HA3 116.4 120.1
N3 CA3 CB3 HB3 64.1 180.0
C2 N3 HN3 CA3 180.0 180.0
HN3 N3 CA3 C3 46.5 25.0
HN3 N3 CA3 CB3 285.4 265.0
HN3 N3 CA3 HA3 169.0 145.0
P CP C5 HP 120.0 120.0
P CP C5 HPA 240.0 240.0
P CP C5 O6 95.6 260.0
C5 O6 C6 H6 253.5 300.0
C5 O6 C6 H6A 13.5 60.0
C7 C6 O6 H6 240.0 240.0
C7 C6 O6 H6A 120.0 120.0
H6 C6 O6 H6A 240.0 240.0
O6 C6 C7 H6 120.0 120.0
O6 C6 C7 H6A 240.0 240.0
H6 C6 C7 H6A 120.0 120.0
O6 C6 H6 H6A 120.1 120.0
C7 C6 H6 H6A 240.0 240.0
O6 C6 H6A H6 240.0 240.0
C7 C6 H6A H6 120.0 120.0
H7 C7 C6 H6 60.1 60.0
H7 C7 C6 H6A 300.1 300.0
H7A C7 H7 H7B 120.0 120.0
H7A C7 C6 H6 180.0 180.0
H7A C7 C6 H6A 60.0 60.0
H7 C7 H7A H7B 240.0 240.0
H7B C7 C6 H6 300.0 299.9
H7B C7 C6 H6A 180.0 179.9
H7 C7 H7B H7A 120.0 120.0
P CP HP C5 235.3 240.0
P CP HP HPA 117.7 120.0
P CP HPA C5 124.7 120.0
P CP HPA HP 242.3 240.0
CG11 CB1 CA1 C1 66.3 175.0
HG11 CG11 CB1 HG1A 240.0 240.0
HG11 CG11 CB1 HG1B 120.0 119.9
HG1A CG11 CB1 HG1B 240.0 239.9
CG21 CB1 CG11 HB1 121.2 120.0
CG11 CB1 CA1 HA1 306.3 55.0
CG11 CB1 CA1 HA1A 186.3 295.0
CA1 CB1 CG11 HB1 238.2 240.0
CB1 CG11 HG11 HG1A 120.0 120.1
CB1 CG11 HG11 HG1B 240.0 240.1
CA1 CB1 CG11 HG11 297.0 180.0
HG11 CG11 CB1 HB1 58.8 299.9
HG1A CG11 HG11 HG1B 120.0 120.0
CB1 CG11 HG1A HG11 240.0 240.0
CB1 CG11 HG1A HG1B 120.0 120.0
CA1 CB1 CG11 HG1A 57.0 300.0
HG1A CG11 CB1 HB1 178.8 60.0
HG11 CG11 HG1A HG1B 240.0 240.1
CB1 CG11 HG1B HG11 120.0 119.9
CB1 CG11 HG1B HG1A 240.0 239.9
CA1 CB1 CG11 HG1B 177.0 60.1
HG1B CG11 CB1 HB1 298.8 180.0
HG11 CG11 HG1B HG1A 120.0 120.0
CG22 CB2 CG12 HB2 121.8 120.0
CG12 CB2 CA2 HA2 61.2 304.4
HG12 CG12 CB2 HB2 58.2 304.6
HG1C CG12 HG12 HG1D 120.0 120.1
HG1C CG12 CB2 HB2 178.2 64.5
HG12 CG12 HG1C HG1D 240.0 239.9
HG1D CG12 CB2 HB2 298.2 184.6
HG12 CG12 HG1D HG1C 120.0 120.1
HG13 CG13 CB3 HG1E 240.0 239.9
HG13 CG13 CB3 HG1F 120.0 120.0
HG1E CG13 CB3 HG1F 240.0 240.1
CG23 CB3 CG13 HB3 120.3 120.0
CG13 CB3 CA3 HA3 305.9 60.0
CA3 CB3 CG13 HB3 241.1 240.0
CB3 CG13 HG13 HG1E 120.0 120.0
CB3 CG13 HG13 HG1F 240.0 240.0
CA3 CB3 CG13 HG13 300.7 180.0
HG13 CG13 CB3 HB3 59.6 300.0
HG1E CG13 HG13 HG1F 120.0 120.0
CB3 CG13 HG1E HG13 239.9 239.9
CB3 CG13 HG1E HG1F 120.0 119.9
CA3 CB3 CG13 HG1E 60.8 300.0
HG1E CG13 CB3 HB3 179.7 60.1
HG13 CG13 HG1E HG1F 240.0 240.0
CB3 CG13 HG1F HG13 120.0 120.1
CB3 CG13 HG1F HG1E 240.0 240.1
CA3 CB3 CG13 HG1F 180.7 60.0
HG1F CG13 CB3 HB3 299.7 180.0
HG13 CG13 HG1F HG1E 120.0 120.0
CD1 CG4 CD2 HD24 180.0 65.3
CD1 CG4 CD2 HD2A 300.0 185.2
CD1 CG4 CD2 HD2B 60.0 305.3
CD2 CG4 CD1 HG4 115.2 120.0
CD1 CG4 CB4 HB4 56.5 53.9
CD1 CG4 CB4 HB4A 296.5 293.9
HD14 CD1 CG4 CD2 180.0 60.0
HD14 CD1 CG4 HG4 64.8 300.1
HD1A CD1 HD14 HD1B 120.0 120.0
HD1A CD1 CG4 CD2 300.0 179.9
HD1A CD1 CG4 HG4 184.8 60.0
HD14 CD1 HD1A HD1B 240.0 240.0
HD1B CD1 CG4 CD2 60.0 300.0
HD1B CD1 CG4 HG4 304.7 180.0
HD14 CD1 HD1B HD1A 120.0 119.9
CG21 CB1 CA1 C1 175.4 295.1
CG21 CB1 CG11 HG11 180.0 59.9
CG21 CB1 CG11 HG1A 300.0 179.9
CG21 CB1 CG11 HG1B 60.0 300.0
CG11 CB1 CG21 HB1 231.7 240.0
CG21 CB1 CA1 HA1 55.4 175.0
CG21 CB1 CA1 HA1A 295.4 55.1
CA1 CB1 CG21 HB1 123.7 119.9
HG21 CG21 CB1 HB1 308.3 180.0
HG2A CG21 HG21 HG2B 120.0 120.0
HG2A CG21 CB1 HB1 68.3 299.9
HG21 CG21 HG2A HG2B 240.0 240.0
HG2B CG21 CB1 HB1 188.3 60.1
HG21 CG21 HG2B HG2A 120.0 119.9
CG12 CB2 CG22 HB2 237.0 240.0
CG22 CB2 CA2 HA2 175.8 64.3
HG22 CG22 CB2 HB2 303.0 180.0
HG2C CG22 HG22 HG2D 120.0 120.1
HG2C CG22 CB2 HB2 62.9 300.0
HG22 CG22 HG2C HG2D 240.0 239.9
HG2D CG22 CB2 HB2 183.0 60.0
HG22 CG22 HG2D HG2C 120.0 120.1
CG23 CB3 CG13 HG13 180.0 60.0
CG23 CB3 CG13 HG1E 300.0 180.0
CG23 CB3 CG13 HG1F 60.0 300.0
CG13 CB3 CG23 HB3 238.4 240.0
CG23 CB3 CA3 HA3 63.8 180.0
CA3 CB3 CG23 HB3 118.9 120.0
HG23 CG23 CB3 HB3 301.7 299.9
HG2E CG23 HG23 HG2F 120.0 120.0
HG2E CG23 CB3 HB3 61.6 60.0
HG23 CG23 HG2E HG2F 240.0 240.0
HG2F CG23 CB3 HB3 181.6 180.0
HG23 CG23 HG2F HG2E 120.0 120.1
CD1 CG4 CD2 HG4 239.7 240.0
HD24 CD2 CG4 HD2A 240.0 240.0
HD24 CD2 CG4 HD2B 120.0 120.0
HD2A CD2 CG4 HD2B 240.0 240.0
CD2 CG4 CB4 HB4 180.8 173.9
CD2 CG4 CB4 HB4A 60.8 53.9
CG4 CD2 HD24 HD2A 120.0 120.0
CG4 CD2 HD24 HD2B 240.0 240.0
HD24 CD2 CG4 HG4 300.3 185.3
HD2A CD2 HD24 HD2B 120.0 119.9
CG4 CD2 HD2A HD24 240.0 240.0
CG4 CD2 HD2A HD2B 120.0 120.1
HD2A CD2 CG4 HG4 60.3 305.2
HD24 CD2 HD2A HD2B 240.0 240.1
CG4 CD2 HD2B HD24 120.0 120.0
CG4 CD2 HD2B HD2A 240.0 239.9
HD2B CD2 CG4 HG4 180.3 65.3
HD24 CD2 HD2B HD2A 120.0 119.9
C1 CA1 CB1 HA1 120.0 120.0
C1 CA1 CB1 HA1A 240.0 240.0
CG11 CB1 CA1 HB1 128.0 120.0
CG21 CB1 CA1 HB1 237.1 240.1
HA1 CA1 CB1 HA1A 120.0 120.0
HA1 CA1 C1 O1 153.0 120.0
CB1 CA1 HA1 C1 120.7 120.0
C1 CA1 HA1 HA1A 119.6 120.0
HA1 CA1 CB1 CG11 306.3 55.0
CB1 CA1 HA1 HA1A 240.4 240.0
HA1 CA1 CB1 HB1 178.3 295.0
HA1A CA1 C1 O1 273.0 240.0
CB1 CA1 HA1A C1 239.3 240.0
C1 CA1 HA1A HA1 240.4 240.0
HA1A CA1 CB1 CG11 186.3 295.0
CB1 CA1 HA1A HA1 119.6 120.0
HA1A CA1 CB1 HB1 58.3 175.0
CB2 CA2 N1 HN1 304.1 265.0
N1 CA2 CB2 HA2 237.2 240.0
CB2 CA2 C2 N3 286.9 273.8
C2 CA2 CB2 HA2 119.2 120.0
HA2 CA2 N1 HN1 183.2 145.0
N1 CA2 HA2 C2 240.0 240.0
HA2 CA2 C2 N3 48.1 33.8
CB3 CA3 C3 O3 35.6 120.0
N3 CA3 CB3 C3 117.5 119.9
C3 CA3 CB3 HA3 122.4 120.0
CB3 CA3 N3 HN3 285.4 265.0
N3 CA3 CB3 HA3 240.0 240.0
CG13 CB3 CA3 HB3 121.7 120.0
CG23 CB3 CA3 HB3 239.6 240.0
HA3 CA3 C3 O3 152.1 240.1
N3 CA3 HA3 C3 243.2 240.0
C3 CA3 HA3 CB3 239.6 240.0
HA3 CA3 N3 HN3 169.0 145.0
N3 CA3 HA3 CB3 122.7 120.1
HA3 CA3 CB3 CG13 305.9 60.0
HA3 CA3 CB3 HB3 184.2 300.0
CB4 CA4 P CP 184.6 305.0
CB4 CA4 N4 HN4 303.6 315.0
HA4 CA4 P CP 302.4 65.0
HA4 CA4 N4 HN4 185.5 195.0
HB1 CB1 CA1 C1 298.3 55.0
HB1 CB1 CG11 HG11 58.8 299.9
HB1 CB1 CG11 HG1A 178.8 60.0
HB1 CB1 CG11 HG1B 298.8 180.0
CA1 CB1 HB1 CG11 117.0 120.0
HB1 CB1 CA1 HA1 178.3 295.0
HB1 CB1 CA1 HA1A 58.3 175.0
HB2 CB2 CA2 HA2 297.9 184.3
HB3 CB3 CG13 HG13 59.6 300.0
HB3 CB3 CG13 HG1E 179.7 60.1
HB3 CB3 CG13 HG1F 299.7 180.0
CA3 CB3 HB3 CG13 120.1 120.0
HB3 CB3 CA3 HA3 184.2 300.0
CG4 CB4 CA4 HA4 66.9 56.1
HB4 CB4 CG4 HB4A 120.0 120.0
HB4 CB4 CA4 HA4 186.9 176.1
CG4 CB4 HB4 HB4A 241.3 240.0
HB4A CB4 CA4 HA4 306.9 296.1
CG4 CB4 HB4A HB4 118.7 120.0
CD1 CG4 HG4 CD2 120.3 119.9
HG4 CG4 CD2 HD24 300.3 185.3
HG4 CG4 CD2 HD2A 60.3 305.2
HG4 CG4 CD2 HD2B 180.3 65.3
HG4 CG4 CB4 HB4 295.8 293.9
HG4 CG4 CB4 HB4A 175.8 173.9