PDB Chemical Component ITU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ITU
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.523 |
1.531 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.114 |
1.091 |
C1 |
H13 |
1.115 |
1.090 |
C2 |
S |
1.807 |
1.809 |
C2 |
H21 |
1.114 |
1.090 |
C2 |
H22 |
1.116 |
1.090 |
S |
C3 |
1.812 |
1.760 |
C3 |
N1 |
1.335 |
1.375 |
C3 |
N2 |
1.328 |
1.304 |
N1 |
HN11 |
1.020 |
0.971 |
N1 |
HN12 |
1.020 |
0.969 |
N2 |
HN2 |
1.020 |
0.971 |
Bond Angles for ITU
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
H11 |
109.4 |
109.5 |
C2 |
C1 |
H12 |
112.2 |
109.5 |
C2 |
C1 |
H13 |
112.2 |
109.5 |
C1 |
C2 |
S |
109.4 |
109.5 |
C1 |
C2 |
H21 |
112.2 |
109.5 |
C1 |
C2 |
H22 |
112.2 |
109.5 |
H11 |
C1 |
H12 |
112.2 |
109.4 |
H11 |
C1 |
H13 |
112.2 |
109.5 |
H12 |
C1 |
H13 |
98.2 |
109.4 |
S |
C2 |
H21 |
112.3 |
109.4 |
S |
C2 |
H22 |
112.2 |
109.4 |
C2 |
S |
C3 |
106.7 |
100.0 |
H21 |
C2 |
H22 |
98.2 |
109.5 |
S |
C3 |
N1 |
119.9 |
120.0 |
S |
C3 |
N2 |
118.2 |
120.0 |
N1 |
C3 |
N2 |
121.9 |
120.0 |
C3 |
N1 |
HN11 |
120.0 |
120.0 |
C3 |
N1 |
HN12 |
108.5 |
120.0 |
C3 |
N2 |
HN2 |
111.7 |
120.0 |
HN11 |
N1 |
HN12 |
108.4 |
120.0 |
Torsion Angles for ITU
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H11 |
C1 |
C2 |
H12 |
234.7 |
240.0 |
H11 |
C1 |
C2 |
H13 |
125.2 |
120.1 |
H12 |
C1 |
C2 |
H13 |
250.5 |
240.0 |
S |
C2 |
C1 |
H21 |
234.7 |
240.0 |
S |
C2 |
C1 |
H22 |
125.2 |
120.0 |
C1 |
C2 |
S |
C3 |
278.4 |
180.0 |
H21 |
C2 |
C1 |
H22 |
250.6 |
239.9 |
C2 |
C1 |
H11 |
H12 |
125.3 |
120.0 |
C2 |
C1 |
H11 |
H13 |
234.8 |
240.0 |
H11 |
C1 |
C2 |
S |
180.0 |
60.0 |
H11 |
C1 |
C2 |
H21 |
305.3 |
180.0 |
H11 |
C1 |
C2 |
H22 |
54.7 |
300.1 |
H12 |
C1 |
H11 |
H13 |
109.5 |
120.0 |
C2 |
C1 |
H12 |
H11 |
236.3 |
240.0 |
C2 |
C1 |
H12 |
H13 |
118.2 |
120.0 |
H12 |
C1 |
C2 |
S |
305.2 |
180.0 |
H12 |
C1 |
C2 |
H21 |
70.6 |
300.0 |
H12 |
C1 |
C2 |
H22 |
180.0 |
60.0 |
H11 |
C1 |
H12 |
H13 |
241.9 |
240.0 |
C2 |
C1 |
H13 |
H11 |
123.7 |
120.0 |
C2 |
C1 |
H13 |
H12 |
241.8 |
240.0 |
H13 |
C1 |
C2 |
S |
54.8 |
300.0 |
H13 |
C1 |
C2 |
H21 |
180.1 |
59.9 |
H13 |
C1 |
C2 |
H22 |
289.5 |
180.0 |
H11 |
C1 |
H13 |
H12 |
118.1 |
120.0 |
S |
C2 |
C1 |
H11 |
180.0 |
60.0 |
S |
C2 |
C1 |
H12 |
305.2 |
180.0 |
S |
C2 |
C1 |
H13 |
54.8 |
300.0 |
C1 |
C2 |
S |
H21 |
125.3 |
120.0 |
C1 |
C2 |
S |
H22 |
234.8 |
240.0 |
H21 |
C2 |
S |
H22 |
109.5 |
120.0 |
C2 |
S |
C3 |
N1 |
357.1 |
180.0 |
C2 |
S |
C3 |
N2 |
176.9 |
-0.0 |
H21 |
C2 |
C1 |
H11 |
305.3 |
180.0 |
H21 |
C2 |
C1 |
H12 |
70.6 |
300.0 |
H21 |
C2 |
C1 |
H13 |
180.1 |
59.9 |
C1 |
C2 |
H21 |
S |
236.2 |
240.0 |
C1 |
C2 |
H21 |
H22 |
118.1 |
120.0 |
S |
C2 |
H21 |
H22 |
241.9 |
240.0 |
H21 |
C2 |
S |
C3 |
153.1 |
60.0 |
H22 |
C2 |
C1 |
H11 |
54.7 |
300.1 |
H22 |
C2 |
C1 |
H12 |
180.0 |
60.0 |
H22 |
C2 |
C1 |
H13 |
289.5 |
180.0 |
C1 |
C2 |
H22 |
S |
123.7 |
120.0 |
C1 |
C2 |
H22 |
H21 |
241.9 |
240.0 |
S |
C2 |
H22 |
H21 |
118.2 |
120.0 |
H22 |
C2 |
S |
C3 |
43.6 |
300.0 |
C3 |
S |
C2 |
H21 |
153.1 |
60.0 |
C3 |
S |
C2 |
H22 |
43.6 |
300.0 |
N1 |
C3 |
S |
N2 |
180.2 |
180.0 |
S |
C3 |
N1 |
HN11 |
180.0 |
180.0 |
S |
C3 |
N1 |
HN12 |
54.7 |
-0.0 |
S |
C3 |
N2 |
HN2 |
34.2 |
180.0 |
S |
C3 |
N1 |
N2 |
179.8 |
180.0 |
N1 |
C3 |
N2 |
HN2 |
214.0 |
-0.0 |
HN11 |
N1 |
C3 |
HN12 |
125.3 |
180.0 |
S |
C3 |
N2 |
N1 |
180.2 |
180.0 |
N2 |
C3 |
N1 |
HN11 |
0.3 |
-0.0 |
N2 |
C3 |
N1 |
HN12 |
234.9 |
180.0 |
HN11 |
N1 |
C3 |
N2 |
0.3 |
360.0 |
C3 |
N1 |
HN11 |
HN12 |
234.7 |
180.0 |
HN12 |
N1 |
C3 |
N2 |
234.9 |
180.0 |
C3 |
N1 |
HN12 |
HN11 |
131.8 |
180.0 |