PDB Chemical Component ITT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ITT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.423 1.480
PG O2G 1.477 1.610
PG O3G 1.460 1.610
PG O3B 1.643 1.610
O2G H2G 0.950 0.967
O3G H3G 0.950 0.967
PB O1B 1.440 1.480
PB O2B 1.465 1.609
PB O3B 1.507 1.611
PB O3A 1.515 1.610
O2B H2B 0.950 0.967
PA O1A 1.551 1.480
PA O2A 1.536 1.610
PA O3A 1.586 1.610
PA O5' 1.597 1.610
O2A H2A 0.950 0.967
O5' C5' 1.497 1.429
C5' C4' 1.350 1.529
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.509 1.446
C4' C3' 1.552 1.545
C4' H4' 1.100 1.091
O4' C1' 1.510 1.445
C3' O3' 1.366 1.429
C3' C2' 1.577 1.544
C3' H3' 1.100 1.090
O3' H1 0.950 0.967
C2' O2' 1.497 1.428
C2' C1' 1.517 1.545
C2' H2' 1.100 1.090
O2' H3 0.949 0.967
C1' N9 1.396 1.464
C1' H1' 1.100 1.089
N9 C8 1.403 1.363
N9 C4 1.343 1.372
C8 N7 1.298 1.302
C8 H8 1.080 1.080
N7 C5 1.379 1.355
C5 C6 1.383 1.403
C5 C4 1.433 1.406
C6 O6 1.323 1.355
C6 N1 1.480 1.327
O6 HO6 0.950 0.967
N1 C2 1.422 1.320
C2 N3 1.341 1.316
C2 H2 1.080 1.080
N3 C4 1.424 1.328

Bond Angles for ITT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 112.5 109.5
O1G PG O3G 111.2 109.5
O1G PG O3B 117.5 109.5
O2G PG O3G 107.6 109.5
O2G PG O3B 97.5 109.4
PG O2G H2G 109.5 106.8
O3G PG O3B 109.4 109.5
PG O3G H3G 109.5 106.8
PG O3B PB 139.4 106.8
O1B PB O2B 119.5 109.5
O1B PB O3B 109.1 109.5
O1B PB O3A 113.0 109.4
O2B PB O3B 107.8 109.5
O2B PB O3A 100.0 109.5
PB O2B H2B 109.5 106.8
O3B PB O3A 106.5 109.5
PB O3A PA 132.1 106.8
O1A PA O2A 107.1 109.5
O1A PA O3A 91.1 109.5
O1A PA O5' 108.4 109.5
O2A PA O3A 122.2 109.4
O2A PA O5' 117.7 109.5
PA O2A H2A 109.5 106.8
O3A PA O5' 106.5 109.5
PA O5' C5' 128.9 106.8
O5' C5' C4' 108.8 109.5
O5' C5' H5'1 109.9 109.5
O5' C5' H5'2 109.7 109.5
C4' C5' H5'1 109.8 109.5
C4' C5' H5'2 109.7 109.5
C5' C4' O4' 93.3 110.4
C5' C4' C3' 119.4 110.7
C5' C4' H4' 116.0 110.3
H5'1 C5' H5'2 109.0 109.4
O4' C4' C3' 114.9 104.7
O4' C4' H4' 120.4 110.4
C4' O4' C1' 99.0 105.4
C3' C4' H4' 94.9 110.3
C4' C3' O3' 120.9 110.5
C4' C3' C2' 95.8 104.2
C4' C3' H3' 116.7 110.5
O4' C1' C2' 111.9 104.8
O4' C1' N9 113.8 110.5
O4' C1' H1' 105.2 110.3
O3' C3' C2' 121.3 110.5
O3' C3' H3' 87.8 110.4
C3' O3' H1 109.5 106.8
C2' C3' H3' 116.3 110.6
C3' C2' O2' 101.7 110.5
C3' C2' C1' 107.7 104.1
C3' C2' H2' 117.4 110.5
O2' C2' C1' 114.7 110.6
O2' C2' H2' 110.8 110.4
C2' O2' H3 109.5 106.8
C1' C2' H2' 105.0 110.5
C2' C1' N9 111.1 110.4
C2' C1' H1' 108.3 110.4
N9 C1' H1' 106.1 110.3
C1' N9 C8 130.5 126.3
C1' N9 C4 126.4 126.3
C8 N9 C4 103.0 107.4
N9 C8 N7 119.9 110.0
N9 C8 H8 120.1 125.0
N9 C4 C5 104.8 106.0
N9 C4 N3 127.0 134.9
N7 C8 H8 120.1 125.0
C8 N7 C5 98.3 109.4
N7 C5 C6 129.7 134.7
N7 C5 C4 114.0 107.1
C6 C5 C4 116.3 118.2
C5 C6 O6 127.5 120.8
C5 C6 N1 118.4 118.5
C5 C4 N3 128.2 119.1
O6 C6 N1 114.2 120.8
C6 O6 HO6 109.5 106.8
C6 N1 C2 118.9 121.3
N1 C2 N3 125.8 122.4
N1 C2 H2 117.1 118.8
N3 C2 H2 117.1 118.8
C2 N3 C4 112.4 120.6

Torsion Angles for ITT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 120.8 120.0
O2G PG O1G O3B 248.0 240.0
O1G PG O2G H2G 15.0 300.0
O3G PG O1G O3B 127.1 120.0
O1G PG O3G H3G 241.2 180.0
O1G PG O3B PB 268.5 45.0
O1G PG O2G O3G 237.1 240.0
O1G PG O2G O3B 123.9 120.0
O3G PG O2G O3B 246.8 240.0
O2G PG O3G H3G 117.5 60.0
O2G PG O3B PB 28.8 165.0
O1G PG O3G O2G 123.7 120.0
O1G PG O3G O3B 228.6 239.9
O2G PG O3G O3B 104.9 119.9
O3G PG O2G H2G 137.8 60.0
O3G PG O3B PB 140.5 285.0
O1G PG O3B O2G 239.7 240.0
O1G PG O3B O3G 128.0 120.1
O2G PG O3B O3G 248.2 240.0
O3B PG O2G H2G 251.0 180.0
O3B PG O3G H3G 12.6 300.0
O1B PB O3B PG 123.6 320.0
O2B PB O3B PG 254.8 80.0
PG O3B PB O3A 1.4 200.0
H2G O2G PG O3G 137.8 60.0
H2G O2G PG O3B 251.0 180.0
H3G O3G PG O3B 12.6 300.0
PG O3B PB O1B 123.6 320.0
O2B PB O1B O3B 235.4 240.0
O2B PB O1B O3A 117.2 120.0
O1B PB O2B H2B 245.2 180.0
O3B PB O1B O3A 241.8 240.0
O1B PB O3A PA 359.2 45.0
PG O3B PB O2B 254.8 80.0
O1B PB O2B O3B 125.2 120.0
O1B PB O2B O3A 236.2 240.0
O3B PB O2B O3A 111.0 120.0
O2B PB O3A PA 231.0 285.0
O1B PB O3B O2B 228.8 240.0
O1B PB O3B O3A 122.2 120.0
O2B PB O3B O3A 253.4 240.0
O3B PB O2B H2B 120.0 60.0
O3B PB O3A PA 118.9 165.0
O1B PB O3A O2B 128.2 120.0
O1B PB O3A O3B 240.3 240.0
O2B PB O3A O3B 112.1 120.0
O3A PB O2B H2B 9.0 300.0
O1A PA O3A PB 164.0 320.0
O2A PA O3A PB 275.1 80.0
PB O3A PA O5' 54.5 200.0
H2B O2B PB O3B 120.0 60.0
H2B O2B PB O3A 9.0 300.0
PB O3A PA O1A 164.0 320.0
O2A PA O1A O3A 235.7 240.0
O2A PA O1A O5' 127.9 120.0
O1A PA O2A H2A 148.6 180.1
O3A PA O1A O5' 252.2 240.0
O1A PA O5' C5' 83.3 55.0
PB O3A PA O2A 275.1 80.0
O1A PA O2A O3A 102.5 120.0
O1A PA O2A O5' 237.7 240.0
O3A PA O2A O5' 135.1 120.0
O2A PA O5' C5' 321.6 295.0
O1A PA O3A O2A 248.9 240.0
O1A PA O3A O5' 109.6 120.0
O2A PA O3A O5' 220.7 240.0
O3A PA O2A H2A 46.1 60.1
O3A PA O5' C5' 180.2 175.0
O1A PA O5' O2A 121.7 120.0
O1A PA O5' O3A 263.1 239.9
O2A PA O5' O3A 141.5 120.0
O5' PA O2A H2A 270.9 300.1
PA O5' C5' C4' 159.9 180.0
PA O5' C5' H5'1 39.6 60.0
PA O5' C5' H5'2 279.9 300.1
H2A O2A PA O3A 46.1 60.1
H2A O2A PA O5' 270.9 300.1
C4' C5' O5' H5'1 120.3 120.1
C4' C5' O5' H5'2 240.0 240.0
O5' C5' C4' O4' 211.8 66.4
O5' C5' C4' C3' 333.0 181.9
O5' C5' C4' H4' 85.6 304.2
H5'1 C5' O5' H5'2 119.7 119.9
O5' C5' C4' H5'1 239.7 240.0
O5' C5' C4' H5'2 120.0 120.0
H5'1 C5' C4' H5'2 240.3 240.0
O4' C4' C5' C3' 238.9 244.5
O4' C4' C5' H4' 126.3 122.2
C5' C4' O4' C1' 152.3 159.4
C3' C4' C5' H4' 247.4 237.7
C5' C4' C3' O3' 84.3 98.5
C5' C4' C3' C2' 216.3 217.3
C5' C4' C3' H3' 339.7 336.0
O5' C5' H5'1 C4' 119.6 120.0
O5' C5' H5'1 H5'2 239.8 240.1
C4' C5' H5'1 H5'2 120.2 120.0
H5'1 C5' C4' O4' 332.1 186.5
H5'1 C5' C4' C3' 93.2 301.9
H5'1 C5' C4' H4' 205.8 64.2
O5' C5' H5'2 C4' 240.5 240.0
O5' C5' H5'2 H5'1 120.3 119.9
C4' C5' H5'2 H5'1 239.7 240.0
H5'2 C5' C4' O4' 91.8 306.4
H5'2 C5' C4' C3' 213.0 61.9
H5'2 C5' C4' H4' 325.6 184.2
O4' C4' C5' H5'1 332.1 186.5
O4' C4' C5' H5'2 91.8 306.4
C5' C4' O4' C3' 124.7 119.2
C5' C4' O4' H4' 237.1 237.8
C3' C4' O4' H4' 112.5 118.7
O4' C4' C3' O3' 193.8 217.5
O4' C4' C3' C2' 325.9 336.2
O4' C4' C3' H3' 89.3 95.0
C4' O4' C1' C2' 352.0 319.6
C4' O4' C1' N9 225.0 200.7
C4' O4' C1' H1' 109.4 78.4
C3' C4' C5' H5'1 93.2 301.9
C3' C4' C5' H5'2 213.0 61.9
C5' C4' C3' O4' 250.5 241.0
C5' C4' C3' H4' 123.6 122.3
O4' C4' C3' H4' 233.2 241.3
C3' C4' O4' C1' 27.7 40.3
O3' C3' C4' C2' 228.0 241.2
O3' C3' C4' H3' 104.6 122.5
C4' C3' O3' H1 4.9 178.1
C2' C3' C4' H3' 236.6 241.2
C4' C3' C2' O2' 264.8 241.1
C4' C3' C2' C1' 25.7 359.9
C4' C3' C2' H2' 143.8 118.6
H4' C4' C5' H5'1 205.8 64.2
H4' C4' C5' H5'2 325.6 184.2
C5' C4' H4' O4' 111.1 122.2
C5' C4' H4' C3' 233.9 237.4
O4' C4' H4' C3' 122.7 115.2
H4' C4' O4' C1' 275.2 281.6
H4' C4' C3' O3' 320.7 336.2
H4' C4' C3' C2' 92.7 94.9
H4' C4' C3' H3' 216.1 213.7
C1' O4' C4' C3' 27.7 40.3
C1' O4' C4' H4' 275.2 281.6
C3' C2' C1' O4' 347.6 24.0
O2' C2' C1' O4' 99.9 142.7
O4' C1' C2' H2' 221.8 265.3
C2' C1' O4' N9 127.0 118.9
C2' C1' O4' H1' 242.6 241.2
N9 C1' O4' H1' 115.7 122.3
O4' C1' N9 C8 19.4 20.5
O4' C1' N9 C4 200.6 200.2
O3' C3' C4' H4' 320.7 336.2
C4' C3' O3' C2' 120.2 114.8
C4' C3' O3' H3' 239.9 237.5
C2' C3' O3' H3' 119.7 122.6
O3' C3' C2' O2' 36.6 359.9
O3' C3' C2' C1' 157.5 118.7
O3' C3' C2' H2' 275.6 237.3
C2' C3' C4' H4' 92.7 94.9
C4' C3' C2' O3' 228.2 241.2
C4' C3' C2' H3' 123.7 118.7
O4' C1' C2' C3' 347.6 24.0
O3' C3' C2' H3' 255.5 237.5
C2' C3' O3' H1 244.7 63.3
O2' C2' C3' C1' 239.1 241.2
O2' C2' C3' H2' 121.0 122.5
C3' C2' O2' H3 116.4 298.6
C1' C2' C3' H2' 241.9 241.3
C3' C2' C1' N9 116.0 142.9
C3' C2' C1' H1' 232.1 265.2
H3' C3' C4' H4' 216.1 213.7
C4' C3' H3' O3' 123.8 122.5
C4' C3' H3' C2' 247.9 245.2
O3' C3' H3' C2' 124.1 122.6
H3' C3' O3' H1 125.0 300.6
H3' C3' C2' O2' 141.1 122.4
H3' C3' C2' C1' 262.0 241.2
H3' C3' C2' H2' 20.1 359.9
H1 O3' C3' C2' 244.7 63.3
H1 O3' C3' H3' 125.0 300.6
O4' C1' C2' O2' 99.9 142.7
O2' C2' C3' H3' 141.1 122.4
C3' C2' O2' C1' 115.9 114.8
C3' C2' O2' H2' 234.5 237.4
C1' C2' O2' H2' 118.7 122.6
O2' C2' C1' N9 228.3 261.7
O2' C2' C1' H1' 344.5 23.9
O4' C1' C2' N9 231.6 241.0
O4' C1' C2' H1' 115.5 118.8
C1' C2' C3' H3' 262.0 241.2
C3' C2' C1' O2' 247.7 241.3
C3' C2' C1' H2' 125.8 118.7
O2' C2' C1' H2' 238.2 237.4
C1' C2' O2' H3 0.5 183.8
N9 C1' C2' H1' 243.9 237.7
C2' C1' N9 C8 252.0 265.1
C2' C1' N9 C4 73.2 84.7
H2' C2' C3' H3' 20.1 359.9
C3' C2' H2' O2' 116.1 122.6
C3' C2' H2' C1' 240.4 245.3
O2' C2' H2' C1' 124.4 122.7
H2' C2' O2' H3 241.9 61.2
H2' C2' C1' N9 350.2 24.2
H2' C2' C1' H1' 106.3 146.5
H3 O2' C2' C1' 0.5 183.8
H3 O2' C2' H2' 241.9 61.2
O4' C1' N9 C2' 127.4 115.5
O4' C1' N9 H1' 244.8 237.8
N9 C1' C2' H2' 350.2 24.2
C2' C1' N9 H1' 117.5 122.3
C8 N9 C1' C4 178.9 180.4
C1' N9 C8 N7 180.1 179.9
C1' N9 C8 H8 0.1 359.9
C1' N9 C4 C5 179.7 179.9
C1' N9 C4 N3 359.8 0.8
O4' C1' H1' C2' 240.2 244.6
O4' C1' H1' N9 120.9 122.3
H1' C1' C2' H2' 106.3 146.5
C2' C1' H1' N9 240.7 237.7
H1' C1' N9 C8 134.6 142.8
H1' C1' N9 C4 315.7 322.4
C8 N9 C1' H1' 134.6 142.8
C1' N9 C8 C4 180.9 179.7
C8 N9 C4 C5 0.6 359.6
C8 N9 C4 N3 180.7 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.6 0.0
C4 N9 C1' H1' 315.7 322.4
C1' N9 C4 C8 179.1 180.3
C4 N9 C8 N7 359.2 0.2
C4 N9 C8 H8 179.2 180.2
N7 C5 C4 N9 359.7 0.4
C6 C5 C4 N9 179.7 180.2
C5 C4 N9 N3 179.8 179.1
C2 N3 C4 N9 180.7 179.6
N7 C8 N9 C4 359.2 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.9 180.0
C8 N7 C5 C4 359.8 359.7
H8 C8 N9 C4 179.2 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.6 180.0
N9 C4 C5 N7 359.7 0.4
C5 N7 C8 H8 180.6 180.0
C6 C5 N7 C4 180.1 180.3
N7 C5 C6 O6 0.5 360.0
N7 C5 C6 N1 179.7 180.0
N7 C5 C4 N3 179.6 179.7
N9 C4 C5 C6 179.7 180.2
N7 C5 C6 C4 179.9 179.7
C6 C5 C4 N3 359.5 359.5
O6 C6 C5 N1 180.8 180.0
C5 C6 O6 HO6 114.6 90.0
C5 C6 N1 C2 0.4 360.0
N9 C4 C5 N3 180.2 180.7
N7 C5 C4 C6 180.1 180.2
C4 C5 C6 O6 180.6 180.3
C4 C5 C6 N1 359.8 0.3
C2 N3 C4 C5 0.9 0.5
O6 C6 C5 C4 180.6 180.3
C5 C6 O6 N1 179.2 180.0
O6 C6 N1 C2 179.7 180.0
N1 C6 C5 C4 359.8 0.3
C5 C6 N1 O6 180.7 180.0
N1 C6 O6 HO6 295.4 270.0
C6 N1 C2 N3 0.1 360.0
C6 N1 C2 H2 180.1 180.0
HO6 O6 C6 N1 295.4 270.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 359.3 359.7
N9 C4 N3 C2 180.7 179.6
C5 C4 N3 C2 0.9 0.5
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 179.3 179.8
N9 C4 N3 C5 179.8 179.0
C4 N3 C2 H2 179.3 179.8