PDB Chemical Component ITP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ITP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.508 |
1.429 |
C1 |
C2 |
1.509 |
1.529 |
C1 |
C6 |
1.555 |
1.531 |
C1 |
H1 |
1.090 |
1.089 |
O1 |
P1 |
1.660 |
1.609 |
C2 |
O2 |
1.453 |
1.429 |
C2 |
C3 |
1.500 |
1.529 |
C2 |
H2 |
1.090 |
1.090 |
O2 |
HO2 |
1.031 |
0.966 |
C3 |
O3 |
1.402 |
1.429 |
C3 |
C4 |
1.608 |
1.530 |
C3 |
H3 |
1.089 |
1.089 |
O3 |
P3 |
1.540 |
1.609 |
C4 |
O4 |
1.417 |
1.428 |
C4 |
C5 |
1.507 |
1.528 |
C4 |
H4 |
1.089 |
1.091 |
O4 |
HO4 |
1.029 |
0.967 |
C5 |
O5 |
1.472 |
1.429 |
C5 |
C6 |
1.550 |
1.530 |
C5 |
H5 |
1.090 |
1.090 |
O5 |
HO5 |
1.030 |
0.967 |
C6 |
O6 |
1.382 |
1.429 |
C6 |
H6 |
1.092 |
1.090 |
O6 |
HO6 |
1.029 |
0.968 |
P1 |
OP1 |
1.465 |
1.609 |
P1 |
OP2 |
1.489 |
1.610 |
P1 |
OP3 |
1.501 |
1.480 |
OP1 |
HP1 |
0.950 |
0.966 |
OP2 |
HP2 |
0.950 |
0.966 |
P3 |
O10 |
1.403 |
1.609 |
P3 |
O11 |
1.448 |
1.480 |
P3 |
O12 |
1.430 |
1.610 |
O10 |
H10 |
0.949 |
0.966 |
O12 |
H12 |
0.949 |
0.966 |
Bond Angles for ITP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
120.4 |
109.5 |
O1 |
C1 |
C6 |
108.7 |
109.4 |
O1 |
C1 |
H1 |
108.8 |
109.5 |
C1 |
O1 |
P1 |
126.9 |
106.8 |
C2 |
C1 |
C6 |
111.5 |
109.5 |
C2 |
C1 |
H1 |
107.6 |
109.5 |
C1 |
C2 |
O2 |
113.9 |
109.5 |
C1 |
C2 |
C3 |
104.8 |
109.5 |
C1 |
C2 |
H2 |
107.9 |
109.4 |
C6 |
C1 |
H1 |
97.4 |
109.4 |
C1 |
C6 |
C5 |
111.8 |
109.5 |
C1 |
C6 |
O6 |
106.4 |
109.5 |
C1 |
C6 |
H6 |
111.1 |
109.4 |
O1 |
P1 |
OP1 |
109.1 |
109.5 |
O1 |
P1 |
OP2 |
108.3 |
109.5 |
O1 |
P1 |
OP3 |
95.0 |
109.4 |
O2 |
C2 |
C3 |
112.4 |
109.5 |
O2 |
C2 |
H2 |
107.2 |
109.4 |
C2 |
O2 |
HO2 |
109.4 |
106.9 |
C3 |
C2 |
H2 |
110.6 |
109.5 |
C2 |
C3 |
O3 |
108.7 |
109.5 |
C2 |
C3 |
C4 |
112.3 |
109.4 |
C2 |
C3 |
H3 |
110.4 |
109.5 |
O3 |
C3 |
C4 |
112.5 |
109.5 |
O3 |
C3 |
H3 |
110.2 |
109.5 |
C3 |
O3 |
P3 |
122.9 |
106.8 |
C4 |
C3 |
H3 |
102.6 |
109.5 |
C3 |
C4 |
O4 |
106.6 |
109.5 |
C3 |
C4 |
C5 |
112.5 |
109.5 |
C3 |
C4 |
H4 |
107.9 |
109.5 |
O3 |
P3 |
O10 |
98.7 |
109.5 |
O3 |
P3 |
O11 |
99.7 |
109.4 |
O3 |
P3 |
O12 |
104.7 |
109.4 |
O4 |
C4 |
C5 |
105.8 |
109.5 |
O4 |
C4 |
H4 |
109.4 |
109.4 |
C4 |
O4 |
HO4 |
109.5 |
106.8 |
C5 |
C4 |
H4 |
114.4 |
109.4 |
C4 |
C5 |
O5 |
106.8 |
109.6 |
C4 |
C5 |
C6 |
112.8 |
109.5 |
C4 |
C5 |
H5 |
107.4 |
109.4 |
O5 |
C5 |
C6 |
107.6 |
109.5 |
O5 |
C5 |
H5 |
110.1 |
109.5 |
C5 |
O5 |
HO5 |
109.5 |
106.8 |
C6 |
C5 |
H5 |
111.9 |
109.4 |
C5 |
C6 |
O6 |
106.5 |
109.5 |
C5 |
C6 |
H6 |
106.1 |
109.4 |
O6 |
C6 |
H6 |
115.0 |
109.5 |
C6 |
O6 |
HO6 |
109.6 |
106.8 |
OP1 |
P1 |
OP2 |
110.4 |
109.4 |
OP1 |
P1 |
OP3 |
118.8 |
109.5 |
P1 |
OP1 |
HP1 |
109.1 |
106.9 |
OP2 |
P1 |
OP3 |
113.6 |
109.5 |
P1 |
OP2 |
HP2 |
108.3 |
106.7 |
O10 |
P3 |
O11 |
121.1 |
109.5 |
O10 |
P3 |
O12 |
116.0 |
109.4 |
P3 |
O10 |
H10 |
98.7 |
106.9 |
O11 |
P3 |
O12 |
112.3 |
109.5 |
P3 |
O12 |
H12 |
104.7 |
106.8 |
Torsion Angles for ITP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
C6 |
130.3 |
120.0 |
C2 |
C1 |
O1 |
H1 |
235.2 |
239.9 |
O1 |
C1 |
C2 |
O2 |
288.1 |
300.1 |
O1 |
C1 |
C2 |
C3 |
164.9 |
180.0 |
O1 |
C1 |
C2 |
H2 |
47.0 |
60.0 |
C6 |
C1 |
O1 |
H1 |
104.9 |
119.9 |
O1 |
C1 |
C6 |
C5 |
193.8 |
180.0 |
O1 |
C1 |
C6 |
O6 |
309.7 |
300.1 |
O1 |
C1 |
C6 |
H6 |
75.5 |
60.0 |
C1 |
O1 |
P1 |
OP1 |
248.5 |
180.0 |
C1 |
O1 |
P1 |
OP2 |
128.3 |
300.0 |
C1 |
O1 |
P1 |
OP3 |
11.4 |
60.0 |
O1 |
C1 |
C2 |
C6 |
231.0 |
240.0 |
O1 |
C1 |
C2 |
H1 |
125.3 |
120.1 |
C2 |
C1 |
O1 |
P1 |
212.4 |
240.0 |
C6 |
C1 |
C2 |
H1 |
254.4 |
240.1 |
C2 |
C1 |
C6 |
C5 |
58.8 |
59.9 |
C2 |
C1 |
C6 |
O6 |
174.7 |
180.0 |
C2 |
C1 |
C6 |
H6 |
300.5 |
300.0 |
O2 |
C2 |
C1 |
C3 |
123.2 |
120.1 |
O2 |
C2 |
C1 |
H2 |
241.1 |
240.1 |
C1 |
C2 |
O2 |
HO2 |
261.5 |
59.9 |
C3 |
C2 |
C1 |
H2 |
117.9 |
120.0 |
C1 |
C2 |
C3 |
O3 |
187.8 |
180.0 |
C1 |
C2 |
C3 |
C4 |
62.7 |
60.0 |
C1 |
C2 |
C3 |
H3 |
308.8 |
300.0 |
O1 |
C1 |
C6 |
C2 |
135.0 |
120.0 |
O1 |
C1 |
C6 |
H1 |
247.2 |
240.0 |
C6 |
C1 |
O1 |
P1 |
82.1 |
120.0 |
C2 |
C1 |
C6 |
H1 |
112.3 |
120.0 |
C6 |
C1 |
C2 |
O2 |
57.2 |
60.1 |
C6 |
C1 |
C2 |
C3 |
293.9 |
300.0 |
C6 |
C1 |
C2 |
H2 |
176.0 |
180.0 |
C4 |
C5 |
C6 |
C1 |
314.1 |
300.1 |
O5 |
C5 |
C6 |
C1 |
196.6 |
180.0 |
C1 |
C6 |
C5 |
H5 |
75.5 |
60.0 |
C5 |
C6 |
C1 |
O6 |
244.1 |
239.9 |
C5 |
C6 |
C1 |
H6 |
118.3 |
119.9 |
O6 |
C6 |
C1 |
H6 |
234.2 |
240.0 |
C1 |
C6 |
O6 |
HO6 |
291.6 |
180.0 |
O1 |
C1 |
H1 |
C2 |
228.0 |
239.9 |
O1 |
C1 |
H1 |
C6 |
112.6 |
119.9 |
H1 |
C1 |
O1 |
P1 |
337.2 |
0.1 |
C2 |
C1 |
H1 |
C6 |
244.6 |
240.0 |
H1 |
C1 |
C2 |
O2 |
162.8 |
180.0 |
H1 |
C1 |
C2 |
C3 |
39.5 |
59.9 |
H1 |
C1 |
C2 |
H2 |
281.7 |
299.9 |
H1 |
C1 |
C6 |
C5 |
306.6 |
299.9 |
H1 |
C1 |
C6 |
O6 |
62.5 |
60.0 |
H1 |
C1 |
C6 |
H6 |
188.2 |
180.0 |
P1 |
O1 |
C1 |
C2 |
212.4 |
240.0 |
P1 |
O1 |
C1 |
C6 |
82.1 |
120.0 |
P1 |
O1 |
C1 |
H1 |
337.2 |
0.1 |
OP1 |
P1 |
O1 |
OP2 |
120.2 |
240.0 |
OP1 |
P1 |
O1 |
OP3 |
237.2 |
120.0 |
O1 |
P1 |
OP1 |
HP1 |
180.0 |
180.0 |
OP2 |
P1 |
O1 |
OP3 |
117.0 |
240.0 |
O1 |
P1 |
OP2 |
HP2 |
180.0 |
300.0 |
O2 |
C2 |
C1 |
C6 |
57.2 |
60.1 |
O2 |
C2 |
C1 |
H1 |
162.8 |
180.0 |
C1 |
C2 |
O2 |
C3 |
241.0 |
239.9 |
C1 |
C2 |
O2 |
H2 |
119.2 |
119.9 |
C3 |
C2 |
O2 |
H2 |
238.2 |
240.0 |
O2 |
C2 |
C3 |
O3 |
63.7 |
59.9 |
O2 |
C2 |
C3 |
C4 |
298.6 |
300.0 |
O2 |
C2 |
C3 |
H3 |
184.6 |
180.0 |
C3 |
C2 |
C1 |
C6 |
293.9 |
300.0 |
C3 |
C2 |
C1 |
H1 |
39.5 |
59.9 |
C1 |
C2 |
C3 |
O2 |
124.2 |
120.1 |
C1 |
C2 |
C3 |
H2 |
244.0 |
240.0 |
O2 |
C2 |
C3 |
H2 |
119.8 |
120.0 |
C3 |
C2 |
O2 |
HO2 |
20.5 |
180.0 |
O3 |
C3 |
C2 |
C4 |
125.1 |
120.0 |
O3 |
C3 |
C2 |
H3 |
239.0 |
240.0 |
C2 |
C3 |
O3 |
P3 |
152.0 |
120.0 |
C4 |
C3 |
C2 |
H3 |
113.9 |
120.0 |
C2 |
C3 |
C4 |
O4 |
191.0 |
179.9 |
C2 |
C3 |
C4 |
C5 |
306.5 |
300.0 |
C2 |
C3 |
C4 |
H4 |
73.6 |
60.0 |
H2 |
C2 |
C1 |
C6 |
176.0 |
180.0 |
H2 |
C2 |
C1 |
H1 |
281.7 |
299.9 |
C1 |
C2 |
H2 |
O2 |
237.0 |
240.1 |
C1 |
C2 |
H2 |
C3 |
114.1 |
120.0 |
O2 |
C2 |
H2 |
C3 |
237.1 |
240.0 |
H2 |
C2 |
O2 |
HO2 |
142.3 |
300.1 |
H2 |
C2 |
C3 |
O3 |
303.8 |
300.0 |
H2 |
C2 |
C3 |
C4 |
178.7 |
180.0 |
H2 |
C2 |
C3 |
H3 |
64.8 |
60.0 |
HO2 |
O2 |
C2 |
C3 |
20.5 |
180.0 |
HO2 |
O2 |
C2 |
H2 |
142.3 |
300.1 |
O3 |
C3 |
C2 |
H2 |
303.8 |
300.0 |
C2 |
C3 |
O3 |
C4 |
235.0 |
240.0 |
C2 |
C3 |
O3 |
H3 |
121.1 |
120.1 |
C4 |
C3 |
O3 |
H3 |
246.2 |
240.0 |
O3 |
C3 |
C4 |
O4 |
67.9 |
59.9 |
O3 |
C3 |
C4 |
C5 |
183.4 |
180.0 |
O3 |
C3 |
C4 |
H4 |
310.6 |
300.0 |
C3 |
O3 |
P3 |
O10 |
187.9 |
180.0 |
C3 |
O3 |
P3 |
O11 |
311.7 |
60.0 |
C3 |
O3 |
P3 |
O12 |
68.0 |
300.0 |
C4 |
C3 |
C2 |
H2 |
178.7 |
180.0 |
C2 |
C3 |
C4 |
O3 |
123.0 |
120.0 |
C2 |
C3 |
C4 |
H3 |
241.4 |
240.0 |
O3 |
C3 |
C4 |
H3 |
118.4 |
120.0 |
C4 |
C3 |
O3 |
P3 |
277.0 |
240.0 |
O4 |
C4 |
C3 |
C5 |
244.5 |
239.9 |
O4 |
C4 |
C3 |
H4 |
117.4 |
119.9 |
C3 |
C4 |
O4 |
HO4 |
270.0 |
180.0 |
C5 |
C4 |
C3 |
H4 |
232.9 |
240.0 |
C3 |
C4 |
C5 |
O5 |
160.8 |
180.0 |
C3 |
C4 |
C5 |
C6 |
42.8 |
59.9 |
C3 |
C4 |
C5 |
H5 |
278.9 |
300.0 |
H3 |
C3 |
C2 |
H2 |
64.8 |
60.0 |
C2 |
C3 |
H3 |
O3 |
239.9 |
240.0 |
C2 |
C3 |
H3 |
C4 |
119.9 |
120.0 |
O3 |
C3 |
H3 |
C4 |
240.0 |
240.0 |
H3 |
C3 |
O3 |
P3 |
30.9 |
360.0 |
H3 |
C3 |
C4 |
O4 |
309.6 |
299.9 |
H3 |
C3 |
C4 |
C5 |
65.1 |
60.0 |
H3 |
C3 |
C4 |
H4 |
192.2 |
180.1 |
P3 |
O3 |
C3 |
C4 |
277.0 |
240.0 |
P3 |
O3 |
C3 |
H3 |
30.9 |
360.0 |
O10 |
P3 |
O3 |
O11 |
236.2 |
120.1 |
O10 |
P3 |
O3 |
O12 |
119.9 |
240.0 |
O3 |
P3 |
O10 |
H10 |
180.0 |
180.0 |
O11 |
P3 |
O3 |
O12 |
243.7 |
120.0 |
O3 |
P3 |
O12 |
H12 |
180.0 |
300.1 |
O4 |
C4 |
C3 |
H3 |
309.6 |
299.9 |
C3 |
C4 |
O4 |
C5 |
119.9 |
120.1 |
C3 |
C4 |
O4 |
H4 |
243.6 |
240.1 |
C5 |
C4 |
O4 |
H4 |
123.6 |
119.9 |
O4 |
C4 |
C5 |
O5 |
276.8 |
300.1 |
O4 |
C4 |
C5 |
C6 |
158.7 |
180.0 |
O4 |
C4 |
C5 |
H5 |
34.9 |
60.1 |
C1 |
C6 |
C5 |
C4 |
314.1 |
300.1 |
C5 |
C4 |
C3 |
H3 |
65.1 |
60.0 |
C3 |
C4 |
C5 |
O4 |
244.0 |
239.9 |
C3 |
C4 |
C5 |
H4 |
123.6 |
120.0 |
O4 |
C4 |
C5 |
H4 |
239.6 |
240.1 |
C5 |
C4 |
O4 |
HO4 |
150.1 |
59.9 |
O5 |
C5 |
C4 |
C6 |
118.0 |
120.1 |
O5 |
C5 |
C4 |
H5 |
241.9 |
240.0 |
C4 |
C5 |
O5 |
HO5 |
175.4 |
180.0 |
C6 |
C5 |
C4 |
H5 |
123.9 |
119.9 |
C4 |
C5 |
C6 |
O6 |
198.4 |
180.1 |
C4 |
C5 |
C6 |
H6 |
75.4 |
60.0 |
H4 |
C4 |
C3 |
H3 |
192.2 |
180.1 |
C3 |
C4 |
H4 |
O4 |
115.5 |
119.9 |
C3 |
C4 |
H4 |
C5 |
234.0 |
239.9 |
O4 |
C4 |
H4 |
C5 |
118.4 |
120.0 |
H4 |
C4 |
O4 |
HO4 |
26.4 |
300.0 |
H4 |
C4 |
C5 |
O5 |
37.2 |
60.0 |
H4 |
C4 |
C5 |
C6 |
279.2 |
299.9 |
H4 |
C4 |
C5 |
H5 |
155.3 |
180.0 |
HO4 |
O4 |
C4 |
C5 |
150.1 |
59.9 |
HO4 |
O4 |
C4 |
H4 |
26.4 |
300.0 |
C1 |
C6 |
C5 |
O5 |
196.6 |
180.0 |
O5 |
C5 |
C4 |
H4 |
37.2 |
60.0 |
C4 |
C5 |
O5 |
C6 |
238.6 |
239.9 |
C4 |
C5 |
O5 |
H5 |
116.3 |
120.0 |
C6 |
C5 |
O5 |
H5 |
237.7 |
240.1 |
O5 |
C5 |
C6 |
O6 |
80.8 |
59.9 |
O5 |
C5 |
C6 |
H6 |
317.9 |
299.9 |
C5 |
C6 |
C1 |
H1 |
306.6 |
299.9 |
C1 |
C6 |
C5 |
O6 |
115.8 |
120.1 |
C1 |
C6 |
C5 |
H6 |
238.7 |
240.1 |
C6 |
C5 |
C4 |
H4 |
279.2 |
299.9 |
C4 |
C5 |
C6 |
O5 |
117.5 |
120.1 |
C4 |
C5 |
C6 |
H5 |
238.7 |
240.1 |
O5 |
C5 |
C6 |
H5 |
121.2 |
120.0 |
C6 |
C5 |
O5 |
HO5 |
296.8 |
300.1 |
O6 |
C6 |
C5 |
H6 |
123.0 |
120.0 |
C5 |
C6 |
O6 |
HO6 |
51.1 |
300.1 |
H5 |
C5 |
C4 |
H4 |
155.3 |
180.0 |
C4 |
C5 |
H5 |
O5 |
244.1 |
239.9 |
C4 |
C5 |
H5 |
C6 |
124.4 |
120.0 |
O5 |
C5 |
H5 |
C6 |
240.3 |
240.0 |
H5 |
C5 |
O5 |
HO5 |
59.1 |
60.0 |
H5 |
C5 |
C6 |
O6 |
319.7 |
300.0 |
H5 |
C5 |
C6 |
H6 |
196.7 |
180.0 |
HO5 |
O5 |
C5 |
C6 |
296.8 |
300.1 |
HO5 |
O5 |
C5 |
H5 |
59.1 |
60.0 |
O6 |
C6 |
C1 |
H1 |
62.5 |
60.0 |
C1 |
C6 |
O6 |
C5 |
240.6 |
239.9 |
C1 |
C6 |
O6 |
H6 |
123.4 |
120.0 |
O6 |
C6 |
C5 |
H5 |
319.7 |
300.0 |
C5 |
C6 |
O6 |
H6 |
242.8 |
240.0 |
H6 |
C6 |
C1 |
H1 |
188.2 |
180.0 |
C1 |
C6 |
H6 |
C5 |
121.7 |
119.9 |
C1 |
C6 |
H6 |
O6 |
239.2 |
240.0 |
H6 |
C6 |
C5 |
H5 |
196.7 |
180.0 |
C5 |
C6 |
H6 |
O6 |
117.4 |
120.1 |
H6 |
C6 |
O6 |
HO6 |
168.3 |
60.0 |
HO6 |
O6 |
C6 |
H6 |
168.3 |
60.0 |
O1 |
P1 |
OP1 |
OP2 |
241.1 |
120.1 |
O1 |
P1 |
OP1 |
OP3 |
107.2 |
240.0 |
OP2 |
P1 |
OP1 |
OP3 |
226.2 |
120.0 |
OP1 |
P1 |
OP2 |
HP2 |
60.6 |
60.1 |
O1 |
P1 |
OP2 |
OP1 |
119.4 |
239.9 |
O1 |
P1 |
OP2 |
OP3 |
255.8 |
120.0 |
OP1 |
P1 |
OP2 |
OP3 |
136.4 |
240.0 |
OP2 |
P1 |
OP1 |
HP1 |
298.9 |
60.0 |
O1 |
P1 |
OP3 |
OP1 |
244.9 |
120.0 |
O1 |
P1 |
OP3 |
OP2 |
112.5 |
240.0 |
OP1 |
P1 |
OP3 |
OP2 |
227.6 |
119.9 |
OP3 |
P1 |
OP1 |
HP1 |
72.7 |
300.0 |
OP3 |
P1 |
OP2 |
HP2 |
284.3 |
180.0 |
HP1 |
OP1 |
P1 |
OP2 |
298.9 |
60.0 |
HP1 |
OP1 |
P1 |
OP3 |
72.7 |
300.0 |
HP2 |
OP2 |
P1 |
OP3 |
284.3 |
180.0 |
O3 |
P3 |
O10 |
O11 |
107.0 |
240.0 |
O3 |
P3 |
O10 |
O12 |
248.9 |
120.0 |
O11 |
P3 |
O10 |
O12 |
141.9 |
240.0 |
O10 |
P3 |
O12 |
H12 |
72.4 |
60.1 |
O3 |
P3 |
O11 |
O10 |
253.6 |
120.1 |
O3 |
P3 |
O11 |
O12 |
110.4 |
240.0 |
O10 |
P3 |
O11 |
O12 |
216.8 |
120.0 |
O11 |
P3 |
O10 |
H10 |
73.1 |
300.1 |
O11 |
P3 |
O12 |
H12 |
287.2 |
180.1 |
O3 |
P3 |
O12 |
O10 |
107.6 |
240.0 |
O3 |
P3 |
O12 |
O11 |
252.8 |
120.0 |
O10 |
P3 |
O12 |
O11 |
145.2 |
240.0 |
O12 |
P3 |
O10 |
H10 |
291.1 |
60.1 |
H10 |
O10 |
P3 |
O11 |
73.1 |
300.1 |
H10 |
O10 |
P3 |
O12 |
291.1 |
60.1 |