PDB Chemical Component ITD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ITD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.498 1.530
N1 C2 1.451 1.466
N1 C4 1.338 1.307
S1 C5 1.746 1.771
C2 C6 1.544 1.538
N2 C7 1.357 1.381
S2 C9 1.704 1.762
C3 C2 1.531 1.530
N3 C10 1.451 1.465
C4 S1 1.693 1.778
C4 N2 1.308 1.365
N4 C9 1.338 1.304
C6 N2 1.431 1.487
C7 C5 1.427 1.316
C7 C8 1.532 1.507
C8 S2 1.814 1.810
C9 N3 1.351 1.376
C10 C11 1.527 1.530
C11 C12 1.546 1.530
C13 C12 1.529 1.531
C14 C13 1.546 1.530
C15 C10 1.525 1.530
C15 C14 1.554 1.530
C16 N4 1.448 1.466
C17 C16 1.531 1.529
C18 C17 1.550 1.531
C19 C18 1.547 1.530
C19 C20 1.523 1.531
C20 C21 1.533 1.530
C21 C16 1.529 1.530
C1 H1 1.100 1.090
C1 H1A 1.100 1.090
C1 H1B 1.100 1.090
C3 H3 1.100 1.090
C3 H3A 1.100 1.090
C3 H3B 1.100 1.090
N3 HN3 1.000 0.970
C5 H5 1.080 1.080
C6 H6 1.100 1.090
C6 H6A 1.100 1.089
C8 H8 1.100 1.090
C8 H8A 1.100 1.091
C10 H10 1.100 1.090
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C12 H12 1.100 1.089
C12 H12A 1.100 1.090
C13 H13 1.100 1.090
C13 H13A 1.100 1.089
C14 H14 1.101 1.090
C14 H14A 1.100 1.090
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
C16 H16 1.100 1.090
C17 H17 1.100 1.090
C17 H17A 1.101 1.090
C18 H18 1.100 1.090
C18 H18A 1.100 1.090
C19 H19 1.100 1.090
C19 H19A 1.100 1.090
C20 H20 1.100 1.090
C20 H20A 1.100 1.089
C21 H21 1.100 1.090
C21 H21A 1.100 1.090

Bond Angles for ITD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C2 N1 106.0 110.5
C1 C2 C6 107.1 110.5
C2 C1 H1 109.5 109.5
C2 C1 H1A 109.5 109.5
C2 C1 H1B 109.5 109.4
C2 N1 C4 105.8 110.1
N1 C2 C6 106.5 104.0
N1 C4 S1 132.1 140.1
N1 C4 N2 113.1 114.5
C4 S1 C5 89.9 94.5
S1 C5 H5 125.4 127.1
C3 C2 C6 111.0 110.7
C2 C6 N2 99.1 103.8
C2 C6 H6 113.1 110.5
C2 C6 H6A 113.1 110.6
C4 N2 C7 114.2 115.5
C6 N2 C7 132.5 136.9
N2 C7 C5 111.9 118.9
N2 C7 C8 121.1 120.5
S2 C9 N4 125.7 120.0
C8 S2 C9 106.5 100.0
S2 C9 N3 113.2 120.0
C9 N3 C10 139.7 120.0
N3 C10 C11 116.0 109.5
C10 N3 HN3 110.2 120.0
N3 C10 H10 100.8 109.5
C7 C5 H5 125.4 127.2
C7 C8 H8 109.3 109.5
C7 C8 H8A 109.3 109.5
C9 N3 HN3 110.1 120.0
C10 C11 C12 109.4 109.5
C11 C10 H10 103.6 109.4
C10 C11 H11 109.5 109.4
C10 C11 H11A 109.5 109.5
C12 C11 H11 109.5 109.4
C12 C11 H11A 109.5 109.5
C11 C12 H12 108.1 109.5
C11 C12 H12A 108.0 109.4
C13 C12 H12 108.0 109.5
C13 C12 H12A 108.1 109.5
C14 C13 H13 107.3 109.5
C14 C13 H13A 107.3 109.5
C15 C10 H10 103.4 109.5
C15 C14 H14 106.4 109.5
C15 C14 H14A 106.4 109.4
C17 C16 H16 96.9 109.5
C18 C17 H17 109.6 109.5
C18 C17 H17A 109.6 109.5
C19 C18 H18 108.0 109.5
C19 C18 H18A 108.0 109.5
C19 C20 C21 114.0 109.5
C20 C19 H19 108.7 109.4
C20 C19 H19A 108.7 109.5
C19 C20 H20 108.0 109.4
C19 C20 H20A 108.0 109.5
C21 C20 H20 108.0 109.5
C21 C20 H20A 108.0 109.5
C20 C21 H21 108.3 109.5
C20 C21 H21A 108.3 109.5
C21 C16 H16 108.2 109.5
H1 C1 H1A 109.5 109.5
H1 C1 H1B 109.4 109.5
H1A C1 H1B 109.5 109.5
H3 C3 H3A 109.4 109.5
H3 C3 H3B 109.4 109.5
H3A C3 H3B 109.5 109.5
H6 C6 H6A 105.6 110.6
H8 C8 H8A 109.6 109.4
H11 C11 H11A 109.4 109.4
H12 C12 H12A 110.8 109.4
H13 C13 H13A 111.6 109.5
H14 C14 H14A 112.3 109.5
H15 C15 H15A 111.7 109.5
H17 C17 H17A 109.3 109.4
H18 C18 H18A 110.8 109.5
H19 C19 H19A 110.2 109.5
H20 C20 H20A 110.9 109.5
H21 C21 H21A 110.6 109.5

Torsion Angles for ITD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1 C2 N1 C4 231.6 241.4
N1 C2 C1 C6 113.4 114.6
C3 C2 C1 C6 234.9 237.2
C1 C2 C6 N2 126.8 118.6
C1 C2 C6 H6 246.8 237.2
C1 C2 C6 H6A 6.8 0.0
H1 C1 C2 H1A 240.0 240.0
H1 C1 C2 H1B 120.0 120.0
H1A C1 C2 H1B 240.0 240.0
C1 C2 N1 C6 246.1 241.4
N1 C2 C1 H1 180.0 58.5
N1 C2 C1 H1A 300.0 178.5
N1 C2 C1 H1B 60.0 298.5
C2 N1 C4 S1 190.4 180.0
C2 N1 C4 N2 9.5 0.0
C3 C2 N1 C6 119.8 118.8
N1 C2 C6 N2 13.7 0.0
N1 C2 C6 H6 133.7 118.6
N1 C2 C6 H6A 253.7 241.4
C4 N1 C2 C6 345.5 360.0
N1 C4 S1 C5 180.1 180.0
N1 C4 N2 C7 179.9 180.0
N2 C7 C5 S1 0.6 359.9
C7 C5 S1 H5 180.0 180.0
C1 C2 C6 N1 113.1 118.6
C6 C2 C1 H1 66.5 303.9
C6 C2 C1 H1A 186.5 63.9
C6 C2 C1 H1B 306.6 184.0
C6 C2 N1 C4 345.5 360.0
C2 C6 N2 C7 171.4 180.0
H6 C6 C2 H6A 240.0 237.2
N2 C7 C5 H5 180.6 180.0
N2 C7 C8 H8 22.4 165.0
N2 C7 C8 H8A 142.4 45.1
S2 C9 N3 C10 178.9 180.0
S2 C9 N3 HN3 358.9 0.0
C1 C2 C3 C6 123.1 122.7
C3 C2 C1 H1 301.4 181.2
C3 C2 C1 H1A 61.5 301.2
C3 C2 C1 H1B 181.5 61.2
C3 C2 N1 C4 105.3 118.8
N1 C2 C3 C6 243.0 245.3
C3 C2 C6 N2 255.2 241.3
C3 C2 C6 H6 15.3 359.9
C3 C2 C6 H6A 135.2 122.7
C9 N3 C10 HN3 180.0 180.0
N3 C10 C11 C12 163.2 180.0
C11 C10 N3 H10 249.0 240.0
N3 C10 C11 H11 283.3 300.0
N3 C10 C11 H11A 43.3 59.9
C15 C10 N3 H10 110.8 120.0
N1 C4 S1 N2 179.1 180.0
C4 S1 C5 H5 179.2 180.0
N1 C4 N2 S1 180.7 180.0
N2 C4 S1 C5 0.9 360.0
C2 C6 N2 C4 351.2 360.0
C6 N2 C4 C7 180.1 180.0
C4 N2 C7 C5 0.1 0.1
C4 N2 C7 C8 179.2 180.0
C8 S2 C9 N4 124.6 174.7
S2 C9 N4 N3 180.9 179.9
N4 C9 N3 C10 359.8 360.0
N4 C9 N3 HN3 179.7 180.0
C2 C6 N2 H6 120.0 118.5
C2 C6 N2 H6A 240.0 241.4
C4 N2 C6 C7 179.9 180.0
C6 N2 C7 C5 179.9 180.0
C6 N2 C7 C8 359.1 359.9
S1 C5 C7 H5 180.0 180.0
N2 C7 C5 C8 179.1 179.9
N2 C7 C8 C5 181.0 180.1
C7 C8 S2 C9 299.6 185.0
C8 C7 C5 H5 1.5 0.1
H8 C8 C7 H8A 240.0 119.9
N2 C7 C8 S2 262.4 285.0
C8 S2 C9 N3 305.5 354.6
S2 C9 N3 N4 179.2 180.1
C9 N3 C10 C11 97.0 205.0
C10 N3 C9 HN3 180.0 180.0
C9 N3 C10 H10 208.0 325.0
C11 C10 N3 HN3 277.0 25.1
N3 C10 C11 H10 109.4 120.0
C12 C11 C10 H11 240.0 240.0
C12 C11 C10 H11A 120.0 120.1
C10 C11 C12 H12 178.6 180.0
C10 C11 C12 H12A 298.6 300.0
C15 C10 C11 H10 248.3 240.0
H11 C11 C10 H11A 240.0 240.1
C12 C11 C10 H10 53.9 60.0
C10 C11 C12 H11 120.0 120.0
C10 C11 C12 H11A 240.0 239.9
C13 C12 C11 H12 240.0 239.9
C13 C12 C11 H12A 120.0 120.0
H11 C11 C12 H11A 120.0 119.9
H12 C12 C11 H12A 240.0 240.0
C13 C12 C11 H11 298.6 300.0
C13 C12 C11 H11A 178.6 180.1
C11 C12 C13 H12 120.0 120.1
C11 C12 C13 H12A 240.0 240.0
H12 C12 C13 H12A 120.0 120.0
C14 C13 C12 H12 201.5 179.9
C14 C13 C12 H12A 81.5 60.0
H13 C13 C14 H13A 120.0 120.0
C15 C10 N3 HN3 138.8 265.0
N3 C10 C15 H10 250.7 240.0
C11 C10 C15 H10 111.8 120.0
C15 C10 C11 H11 62.2 60.0
C15 C10 C11 H11A 182.2 180.0
C15 C14 C13 H13 257.1 300.1
C15 C14 C13 H13A 137.1 180.0
C14 C15 C10 H10 285.4 300.0
H14 C14 C15 H14A 120.0 120.0
C21 C16 C17 H16 113.9 120.1
C18 C17 C16 H16 297.8 299.9
H17 C17 C18 H17A 120.0 119.9
C19 C18 C17 H17 186.3 180.0
C19 C18 C17 H17A 66.3 60.0
H18 C18 C19 H18A 120.0 120.0
C20 C19 C18 H18 293.4 300.0
C20 C19 C18 H18A 173.4 180.0
C21 C20 C19 H20 240.0 240.0
C21 C20 C19 H20A 120.0 120.0
C19 C20 C21 H21 167.0 300.0
C19 C20 C21 H21A 287.0 179.9
H19 C19 C20 H19A 120.0 120.0
H20 C20 C19 H20A 240.0 240.0
C21 C20 C19 H19 191.1 180.0
C21 C20 C19 H19A 71.1 60.0
C19 C20 C21 H20 120.0 119.9
C19 C20 C21 H20A 240.0 240.0
C20 C21 C16 H16 57.8 60.1
H20 C20 C21 H20A 120.0 120.1
H21 C21 C20 H21A 240.0 120.0
C17 C16 C21 H16 252.8 239.9
H1 C1 C2 N1 180.0 58.5
H1 C1 C2 C6 66.5 303.9
C2 C1 H1 H1A 120.0 120.0
C2 C1 H1 H1B 240.0 240.1
H1A C1 H1 H1B 120.0 120.0
H1A C1 C2 N1 300.0 178.5
H1A C1 C2 C6 186.5 63.9
C2 C1 H1A H1 239.9 240.0
C2 C1 H1A H1B 120.0 120.0
H1 C1 H1A H1B 240.1 240.0
H1B C1 C2 N1 60.0 298.5
H1B C1 C2 C6 306.6 184.0
C2 C1 H1B H1 120.0 120.0
C2 C1 H1B H1A 240.0 240.0
H1 C1 H1B H1A 120.0 120.0
H3 C3 C2 C6 56.9 298.0
H3A C3 H3 H3B 120.0 120.0
H3A C3 C2 C6 176.9 58.0
H3 C3 H3A H3B 240.1 240.0
H3B C3 C2 C6 296.9 178.0
H3 C3 H3B H3A 119.9 120.0
C9 N3 HN3 C10 180.0 180.0
HN3 N3 C10 C11 277.0 25.1
HN3 N3 C10 H10 28.0 145.0
C2 C6 H6 N2 248.4 245.6
C2 C6 H6 H6A 124.2 122.8
H6 C6 N2 C7 51.4 61.5
C2 C6 H6A N2 111.6 114.4
C2 C6 H6A H6 235.8 237.3
H6A C6 N2 C7 291.4 298.6
H8 C8 S2 C9 179.6 305.0
C7 C8 H8 H8A 119.8 240.0
H8A C8 S2 C9 59.6 64.9
C7 C8 H8A H8 240.2 120.0
N3 C10 H10 C11 239.7 240.0
H10 C10 N3 HN3 28.0 145.0
H10 C10 C11 C12 53.9 60.0
H10 C10 C11 H11 173.9 180.0
H10 C10 C11 H11A 293.9 299.9
C10 C11 H11 C12 240.1 240.0
H11 C11 C10 H10 173.9 180.0
C10 C11 H11 H11A 120.0 120.0
C12 C11 H11 H11A 239.9 240.0
H11 C11 C12 H12 58.6 60.0
H11 C11 C12 H12A 178.6 180.0
C10 C11 H11A C12 119.9 120.1
H11A C11 C10 H10 293.9 299.9
C10 C11 H11A H11 240.0 240.1
C12 C11 H11A H11 120.1 119.9
H11A C11 C12 H12 298.6 300.1
H11A C11 C12 H12A 58.6 60.1
H12 C12 C11 H11 58.6 60.0
H12 C12 C11 H11A 298.6 300.1
C11 C12 H12 H12A 118.2 120.0
C13 C12 H12 H12A 241.8 240.0
H12A C12 C11 H11 178.6 180.0
H12A C12 C11 H11A 58.6 60.1
C11 C12 H12A H12 241.8 240.0
C13 C12 H12A H12 118.2 120.0
H13 C13 C12 H12 321.5 300.0
H13 C13 C12 H12A 201.5 180.0
C14 C13 H13 H13A 242.7 239.9
H13A C13 C12 H12 81.5 59.9
H13A C13 C12 H12A 321.5 300.0
C14 C13 H13A H13 117.3 120.1
H14 C14 C13 H13 17.1 60.0
H14 C14 C13 H13A 257.1 300.0
C15 C14 H14 H14A 243.9 240.0
H14A C14 C13 H13 137.1 180.1
H14A C14 C13 H13A 17.1 60.0
C15 C14 H14A H14 116.1 120.0
H15 C15 C10 H10 45.4 60.0
H15 C15 C14 H14 103.7 60.0
H15 C15 C14 H14A 343.7 300.0
H15A C15 C10 H10 165.4 180.0
H15A C15 C14 H14 343.7 300.0
H15A C15 C14 H14A 223.7 180.0
H17 C17 C16 H16 57.8 60.0
C18 C17 H17 H17A 239.8 240.0
H17A C17 C16 H16 177.8 180.0
C18 C17 H17A H17 120.2 120.0
H18 C18 C17 H17 306.3 299.9
H18 C18 C17 H17A 186.3 180.0
C19 C18 H18 H18A 241.8 240.0
H18A C18 C17 H17 66.3 60.0
H18A C18 C17 H17A 306.3 300.0
C19 C18 H18A H18 118.2 120.0
H19 C19 C18 H18 53.4 60.0
H19 C19 C18 H18A 293.4 300.0
H19 C19 C20 C21 191.1 180.0
C20 C19 H19 H19A 241.0 240.0
H19 C19 C20 H20 311.0 299.9
H19 C19 C20 H20A 71.1 60.0
H19A C19 C18 H18 173.4 180.0
H19A C19 C18 H18A 53.4 60.0
H19A C19 C20 C21 71.1 60.0
C20 C19 H19A H19 119.0 119.9
H19A C19 C20 H20 191.1 180.0
H19A C19 C20 H20A 311.1 300.0
C19 C20 H20 C21 236.3 240.0
H20 C20 C19 H19 311.0 299.9
H20 C20 C19 H19A 191.1 180.0
C19 C20 H20 H20A 118.1 120.0
C21 C20 H20 H20A 241.8 239.9
H20 C20 C21 H21 47.0 180.1
H20 C20 C21 H21A 167.0 60.0
C19 C20 H20A C21 123.7 120.0
H20A C20 C19 H19 71.1 60.0
H20A C20 C19 H19A 311.1 300.0
C19 C20 H20A H20 241.8 240.1
C21 C20 H20A H20 118.2 120.0
H20A C20 C21 H21 287.0 60.0
H20A C20 C21 H21A 46.9 300.0
H21 C21 C20 H20 47.0 180.1
H21 C21 C20 H20A 287.0 60.0
C20 C21 H21 H21A 118.5 240.0
H21 C21 C16 H16 297.8 180.0
H21A C21 C20 H20 167.0 60.0
H21A C21 C20 H20A 46.9 300.0
C20 C21 H21A H21 241.5 120.0
H21A C21 C16 H16 177.9 300.1