PDB Chemical Component IRP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IRP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.478 1.610
P O2P 1.464 1.609
P O3P 1.478 1.479
P O5' 1.553 1.610
O1P HO1 0.950 0.967
O2P HO2 0.951 0.966
O5' C5' 1.417 1.427
C5' C4' 1.481 1.529
C5' H5'1 1.114 1.090
C5' H5'2 1.115 1.090
C4' N4' 1.428 1.479
C4' C3' 1.495 1.540
C4' H4' 1.116 1.090
N4' C1' 1.418 1.484
N4' HN'4 1.020 1.009
C3' O3' 1.425 1.429
C3' C2' 1.497 1.545
C3' H3' 1.114 1.090
O3' HO'3 0.950 0.966
C2' O2' 1.425 1.430
C2' C1' 1.550 1.551
C2' H2' 1.114 1.090
O2' HO'2 0.950 0.967
C1' C9 1.531 1.507
C1' H1' 1.115 1.090
C9 C8 1.401 1.349
C9 C4 1.410 1.411
C8 N7 1.296 1.361
C8 H8 1.104 1.080
N7 C5 1.390 1.376
N7 H7 1.020 0.970
C4 N3 1.389 1.354
C4 C5 1.400 1.399
O6 C6 1.237 1.220
C6 N1 1.408 1.351
C6 C5 1.433 1.409
N1 C2 1.406 1.358
N1 H1 1.019 0.969
C2 N3 1.369 1.302
C2 H2 1.103 1.080

Bond Angles for IRP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 113.5 109.5
O1P P O3P 109.3 109.5
O1P P O5' 107.9 109.5
P O1P HO1 113.5 106.8
O2P P O3P 113.0 109.5
O2P P O5' 110.9 109.5
P O2P HO2 113.6 106.8
O3P P O5' 101.5 109.5
P O5' C5' 128.1 106.8
O5' C5' C4' 106.4 109.6
O5' C5' H5'1 113.4 109.5
O5' C5' H5'2 113.4 109.5
C4' C5' H5'1 113.4 109.5
C4' C5' H5'2 113.3 109.5
C5' C4' N4' 110.8 110.1
C5' C4' C3' 109.8 110.0
C5' C4' H4' 108.4 109.9
H5'1 C5' H5'2 97.1 109.4
N4' C4' C3' 109.3 107.1
N4' C4' H4' 108.8 109.9
C4' N4' C1' 113.5 105.8
C4' N4' HN'4 110.7 106.7
C3' C4' H4' 109.8 109.9
C4' C3' O3' 106.7 110.4
C4' C3' C2' 103.3 105.2
C4' C3' H3' 116.8 110.3
C1' N4' HN'4 110.8 106.7
N4' C1' C2' 102.9 103.2
N4' C1' C9 107.2 110.7
N4' C1' H1' 114.8 110.7
O3' C3' C2' 113.9 110.3
O3' C3' H3' 106.6 110.2
C3' O3' HO'3 106.7 106.8
C2' C3' H3' 109.9 110.3
C3' C2' O2' 111.6 110.9
C3' C2' C1' 110.2 102.8
C3' C2' H2' 107.7 110.8
O2' C2' C1' 109.9 110.7
O2' C2' H2' 108.0 110.6
C2' O2' HO'2 111.6 106.8
C1' C2' H2' 109.4 110.8
C2' C1' C9 109.0 110.7
C2' C1' H1' 113.2 110.7
C9 C1' H1' 109.3 110.6
C1' C9 C8 125.7 126.1
C1' C9 C4 130.7 126.1
C8 C9 C4 103.6 107.8
C9 C8 N7 115.3 109.5
C9 C8 H8 125.8 125.3
C9 C4 N3 128.1 134.0
C9 C4 C5 105.8 106.7
N7 C8 H8 118.8 125.3
C8 N7 C5 104.4 108.8
C8 N7 H7 125.2 125.7
C5 N7 H7 130.5 125.5
N7 C5 C4 110.8 107.3
N7 C5 C6 129.1 134.2
N3 C4 C5 126.1 119.4
C4 N3 C2 113.9 121.0
C4 C5 C6 120.0 118.5
O6 C6 N1 120.4 120.7
O6 C6 C5 126.7 120.8
N1 C6 C5 112.9 118.5
C6 N1 C2 124.7 120.5
C6 N1 H1 117.8 119.8
C2 N1 H1 117.6 119.7
N1 C2 N3 122.3 122.1
N1 C2 H2 120.3 118.9
N3 C2 H2 117.4 118.9

Torsion Angles for IRP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 232.9 120.0
O2P P O1P O5' 123.3 240.0
O1P P O2P HO2 180.0 60.0
O3P P O1P O5' 250.4 120.0
O1P P O5' C5' 20.3 180.0
O1P P O2P O3P 125.2 240.0
O1P P O2P O5' 238.4 120.0
O2P P O1P HO1 180.0 60.0
O3P P O2P O5' 113.1 240.0
O2P P O5' C5' 255.4 299.9
O1P P O3P O2P 232.5 120.0
O1P P O3P O5' 113.8 240.0
O3P P O1P HO1 307.1 300.0
O2P P O3P O5' 241.3 120.0
O3P P O2P HO2 54.8 180.0
O3P P O5' C5' 135.1 60.0
O1P P O5' O2P 124.9 240.0
O1P P O5' O3P 245.1 120.0
O5' P O1P HO1 56.7 180.0
O2P P O5' O3P 120.2 240.0
O5' P O2P HO2 301.7 300.0
P O5' C5' C4' 152.1 180.0
P O5' C5' H5'1 277.3 60.0
P O5' C5' H5'2 26.9 300.1
HO1 O1P P O2P 180.0 60.0
HO1 O1P P O3P 307.1 300.0
HO1 O1P P O5' 56.7 180.0
HO2 O2P P O3P 54.8 180.0
HO2 O2P P O5' 301.7 300.0
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.2 240.0
O5' C5' C4' N4' 55.7 62.3
O5' C5' C4' C3' 176.6 180.1
O5' C5' C4' H4' 296.5 301.2
H5'1 C5' O5' H5'2 250.5 119.9
O5' C5' C4' H5'1 125.3 240.0
O5' C5' C4' H5'2 234.8 120.1
H5'1 C5' C4' H5'2 109.5 240.1
N4' C4' C5' C3' 239.2 242.3
N4' C4' C5' H4' 119.2 121.2
C5' C4' N4' C1' 112.5 144.9
C5' C4' N4' HN'4 347.2 258.2
C3' C4' C5' H4' 240.1 238.9
C5' C4' C3' O3' 126.5 120.3
C5' C4' C3' C2' 246.9 239.2
C5' C4' C3' H3' 7.5 358.2
O5' C5' H5'1 C4' 238.6 120.1
O5' C5' H5'1 H5'2 119.3 240.0
C4' C5' H5'1 H5'2 240.7 119.9
H5'1 C5' C4' N4' 290.5 182.4
H5'1 C5' C4' C3' 51.3 300.1
H5'1 C5' C4' H4' 171.2 61.2
O5' C5' H5'2 C4' 121.4 239.9
O5' C5' H5'2 H5'1 240.7 120.0
C4' C5' H5'2 H5'1 119.3 240.1
H5'2 C5' C4' N4' 181.0 302.3
H5'2 C5' C4' C3' 301.8 60.0
H5'2 C5' C4' H4' 61.7 181.1
N4' C4' C5' H5'1 290.5 182.4
N4' C4' C5' H5'2 181.0 302.3
C5' C4' N4' C3' 121.1 119.5
C5' C4' N4' H4' 241.0 238.8
C3' C4' N4' H4' 119.9 119.3
N4' C4' C3' O3' 248.2 239.9
N4' C4' C3' C2' 8.6 358.9
N4' C4' C3' H3' 129.2 117.8
C1' N4' C4' HN'4 125.3 246.7
C4' N4' C1' C2' 4.3 320.7
C4' N4' C1' C9 249.4 202.2
C4' N4' C1' H1' 127.7 79.2
C3' C4' C5' H5'1 51.3 300.1
C3' C4' C5' H5'2 301.8 60.0
C5' C4' C3' N4' 238.3 240.4
C5' C4' C3' H4' 119.0 121.1
N4' C4' C3' H4' 240.7 240.7
C3' C4' N4' C1' 351.4 25.3
C3' C4' N4' HN'4 226.1 138.7
O3' C3' C4' C2' 239.6 241.0
O3' C3' C4' H3' 119.0 122.1
C4' C3' O3' HO'3 180.0 178.6
C2' C3' C4' H3' 239.4 241.0
C4' C3' C2' O2' 231.6 219.6
C4' C3' C2' C1' 354.0 338.0
C4' C3' C2' H2' 113.2 96.3
H4' C4' C5' H5'1 171.2 61.2
H4' C4' C5' H5'2 61.7 181.1
C5' C4' H4' N4' 120.5 121.3
C5' C4' H4' C3' 240.1 238.9
N4' C4' H4' C3' 119.6 117.6
H4' C4' N4' C1' 231.5 266.0
H4' C4' N4' HN'4 106.2 19.4
H4' C4' C3' O3' 7.5 359.2
H4' C4' C3' C2' 127.9 118.2
H4' C4' C3' H3' 248.5 237.1
C1' N4' C4' C3' 351.4 25.3
C1' N4' C4' H4' 231.5 266.0
C4' N4' C1' HN'4 234.7 113.3
C3' C2' C1' N4' 1.4 37.5
O2' C2' C1' N4' 124.8 156.0
N4' C1' C2' H2' 243.2 279.1
C2' C1' N4' C9 114.9 118.5
C2' C1' N4' H1' 236.6 241.5
C9 C1' N4' H1' 121.7 123.0
N4' C1' C9 C8 12.8 28.4
N4' C1' C9 C4 192.0 208.2
HN'4 N4' C4' C3' 226.1 138.7
HN'4 N4' C4' H4' 106.2 19.4
C4' N4' HN'4 C1' 126.9 247.2
HN'4 N4' C1' C2' 129.6 207.4
HN'4 N4' C1' C9 14.7 88.9
HN'4 N4' C1' H1' 253.0 325.9
O3' C3' C4' H4' 7.5 359.2
C4' C3' O3' C2' 113.3 115.8
C4' C3' O3' H3' 234.6 237.9
C2' C3' O3' H3' 121.3 122.1
O3' C3' C2' O2' 346.9 338.6
O3' C3' C2' C1' 109.3 97.0
O3' C3' C2' H2' 228.5 215.4
C2' C3' C4' H4' 127.9 118.2
C4' C3' C2' O3' 244.7 241.0
C4' C3' C2' H3' 125.2 118.9
N4' C1' C2' C3' 1.4 37.5
O3' C3' C2' H3' 240.5 238.0
C2' C3' O3' HO'3 66.7 62.8
O2' C2' C3' C1' 237.6 241.6
O2' C2' C3' H2' 118.3 123.2
C3' C2' O2' HO'2 180.0 293.5
C1' C2' C3' H2' 240.7 241.6
C3' C2' C1' C9 115.0 156.0
C3' C2' C1' H1' 236.9 279.0
H3' C3' C4' H4' 248.5 237.1
C4' C3' H3' O3' 119.0 122.1
C4' C3' H3' C2' 242.9 244.2
O3' C3' H3' C2' 123.9 122.1
H3' C3' O3' HO'3 305.4 300.7
H3' C3' C2' O2' 106.3 100.6
H3' C3' C2' C1' 228.7 219.0
H3' C3' C2' H2' 348.0 337.4
HO'3 O3' C3' C2' 66.7 62.8
HO'3 O3' C3' H3' 305.4 300.7
N4' C1' C2' O2' 124.8 156.0
O2' C2' C3' H3' 106.3 100.6
C3' C2' O2' C1' 122.6 113.5
C3' C2' O2' H2' 241.9 236.7
C1' C2' O2' H2' 119.3 123.2
O2' C2' C1' C9 238.4 274.5
O2' C2' C1' H1' 0.3 37.5
C2' C1' N4' HN'4 129.6 207.4
N4' C1' C2' C9 246.4 241.5
N4' C1' C2' H1' 124.5 118.5
C1' C2' C3' H3' 228.7 219.0
C3' C2' C1' O2' 236.6 241.5
C3' C2' C1' H2' 118.2 118.4
O2' C2' C1' H2' 241.6 236.9
C1' C2' O2' HO'2 57.4 180.0
C9 C1' C2' H1' 238.1 237.0
C2' C1' C9 C8 262.0 274.6
C2' C1' C9 C4 81.2 94.4
H2' C2' C3' H3' 348.0 337.4
C3' C2' H2' O2' 120.6 123.4
C3' C2' H2' C1' 240.2 246.6
O2' C2' H2' C1' 119.6 123.2
H2' C2' O2' HO'2 298.1 56.8
H2' C2' C1' C9 356.8 37.6
H2' C2' C1' H1' 118.7 160.6
HO'2 O2' C2' C1' 57.4 180.0
HO'2 O2' C2' H2' 298.1 56.8
C9 C1' N4' HN'4 14.7 88.9
N4' C1' C9 C2' 110.8 113.9
N4' C1' C9 H1' 235.0 236.9
C9 C1' C2' H2' 356.8 37.6
C2' C1' C9 H1' 124.2 123.1
C8 C9 C1' C4 180.7 180.2
C1' C9 C8 N7 179.4 180.0
C1' C9 C8 H8 359.4 0.1
C1' C9 C4 N3 0.5 0.8
C1' C9 C4 C5 180.8 179.8
H1' C1' N4' HN'4 253.0 325.9
N4' C1' H1' C2' 242.2 246.1
N4' C1' H1' C9 120.5 123.0
H1' C1' C2' H2' 118.7 160.6
C2' C1' H1' C9 238.3 236.9
H1' C1' C9 C8 137.8 151.5
H1' C1' C9 C4 317.1 331.3
C8 C9 C1' H1' 137.8 151.5
C1' C9 C8 C4 179.4 179.8
C8 C9 C4 N3 179.9 180.6
C8 C9 C4 C5 0.2 359.6
N7 C8 C9 H8 180.0 179.9
C9 C8 N7 C5 359.9 0.1
C9 C8 N7 H7 179.8 180.1
C4 C9 C1' H1' 317.1 331.3
C1' C9 C4 C8 180.6 180.2
C4 C9 C8 N7 359.9 0.2
C4 C9 C8 H8 179.9 180.3
N7 C5 C4 C9 359.7 0.4
N3 C4 C9 C5 179.7 181.0
C9 C4 N3 C2 180.3 179.7
C9 C4 C5 C6 179.6 180.2
N7 C8 C9 C4 359.9 0.2
C9 C8 N7 H8 180.0 180.1
C5 N7 C8 H7 180.0 180.0
C8 N7 C5 C4 0.3 359.7
C8 N7 C5 C6 180.4 180.0
H8 C8 C9 C4 179.9 180.3
C9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 179.9 180.0
H8 C8 N7 H7 359.8 360.0
C9 C4 C5 N7 359.7 0.4
C5 N7 C8 H8 179.9 180.0
C8 N7 C5 H7 180.0 180.0
N3 C4 C5 N7 180.0 179.6
C4 C5 N7 C6 179.9 179.7
O6 C6 C5 N7 0.2 0.0
N1 C6 C5 N7 180.0 179.9
H7 N7 C8 H8 359.8 360.0
C8 N7 H7 C5 180.1 180.0
H7 N7 C5 C4 180.3 179.7
H7 N7 C5 C6 0.4 0.0
C9 C4 N3 C5 180.4 179.0
N7 C5 C4 N3 180.0 179.6
N3 C4 C5 C6 359.9 359.4
N1 C2 N3 C4 0.2 359.6
C4 N3 C2 H2 180.2 179.6
C9 C4 C5 N3 179.7 180.8
C4 C5 N7 H7 180.3 179.7
N7 C5 C4 C6 180.1 180.3
C5 C4 N3 C2 359.9 0.7
O6 C6 C5 C4 180.3 180.4
N1 C6 C5 C4 0.1 0.3
N7 C5 C6 O6 0.2 0.0
C4 C5 C6 O6 180.3 180.4
N1 C6 O6 C5 180.1 180.1
O6 C6 N1 C2 179.9 179.9
O6 C6 N1 H1 359.9 359.9
N7 C5 C6 N1 180.0 179.9
C4 C5 C6 N1 0.1 0.3
O6 C6 N1 C5 179.9 179.9
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 N3 359.8 0.0
C6 N1 C2 H2 179.8 180.0
C6 C5 N7 H7 0.4 0.0
N7 C5 C6 C4 179.9 179.7
O6 C6 C5 N1 180.1 180.1
C5 C6 N1 C2 360.0 0.0
C5 C6 N1 H1 180.0 180.0
C4 N3 C2 N1 0.2 359.6
C2 N1 C6 C5 360.0 0.0
C6 N1 C2 H1 180.0 180.0
N3 C2 N1 H2 180.0 180.1
H1 N1 C6 C5 180.0 180.0
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N3 179.8 180.0
H1 N1 C2 H2 359.8 360.0
C2 N3 C4 C5 359.9 0.7
N3 C2 N1 H1 179.8 180.0
N1 C2 N3 H2 180.0 179.9
H2 C2 N1 H1 359.8 360.0
N1 C2 H2 N3 180.0 180.1