PDB Chemical Component IRL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IRL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C8 |
C5 |
1.569 |
1.507 |
| C5 |
C4 |
1.428 |
1.380 |
| C5 |
C6 |
1.422 |
1.384 |
| C4 |
C3 |
1.394 |
1.396 |
| C6 |
C1 |
1.393 |
1.383 |
| C3 |
C9 |
1.436 |
1.479 |
| C3 |
C2 |
1.343 |
1.395 |
| O26 |
C9 |
1.234 |
1.215 |
| C1 |
C2 |
1.308 |
1.381 |
| C1 |
C7 |
1.452 |
1.506 |
| C9 |
N10 |
1.481 |
1.348 |
| C25 |
N10 |
1.405 |
1.465 |
| N10 |
C11 |
1.426 |
1.465 |
| C12 |
C11 |
1.422 |
1.530 |
| C12 |
C13 |
1.467 |
1.507 |
| C18 |
C17 |
1.275 |
1.380 |
| C18 |
C13 |
1.399 |
1.383 |
| C11 |
C27 |
1.521 |
1.508 |
| C17 |
C16 |
1.384 |
1.394 |
| C13 |
C14 |
1.397 |
1.383 |
| C40 |
C41 |
1.400 |
1.367 |
| C40 |
C39 |
1.400 |
1.388 |
| C41 |
C37 |
1.394 |
1.396 |
| C14 |
C15 |
1.474 |
1.380 |
| C16 |
C15 |
1.513 |
1.393 |
| C16 |
C19 |
1.652 |
1.484 |
| C32 |
C30 |
1.556 |
1.530 |
| C32 |
C33 |
1.535 |
1.507 |
| C30 |
C31 |
1.526 |
1.507 |
| C30 |
N29 |
1.439 |
1.464 |
| O42 |
C31 |
1.176 |
1.209 |
| C37 |
C33 |
1.328 |
1.465 |
| C37 |
C36 |
1.356 |
1.407 |
| C24 |
C19 |
1.444 |
1.393 |
| C24 |
C23 |
1.414 |
1.380 |
| C39 |
C38 |
1.415 |
1.378 |
| C31 |
O43 |
1.175 |
1.342 |
| C27 |
N29 |
1.508 |
1.347 |
| C27 |
O28 |
1.303 |
1.212 |
| C19 |
C20 |
1.386 |
1.394 |
| C33 |
C34 |
1.333 |
1.343 |
| C23 |
C22 |
1.406 |
1.383 |
| C36 |
C38 |
1.426 |
1.391 |
| C36 |
N35 |
1.402 |
1.377 |
| C20 |
C21 |
1.416 |
1.380 |
| C34 |
N35 |
1.390 |
1.368 |
| C22 |
C21 |
1.397 |
1.383 |
| C2 |
H1 |
1.080 |
1.080 |
| C4 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.080 |
1.080 |
| C7 |
H4 |
1.100 |
1.090 |
| C7 |
H5 |
1.100 |
1.090 |
| C7 |
H6 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.090 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H9 |
1.100 |
1.091 |
| C11 |
H10 |
1.100 |
1.089 |
| C12 |
H11 |
1.100 |
1.090 |
| C12 |
H12 |
1.100 |
1.090 |
| C14 |
H13 |
1.080 |
1.079 |
| C15 |
H14 |
1.080 |
1.080 |
| C17 |
H15 |
1.080 |
1.079 |
| C18 |
H16 |
1.080 |
1.079 |
| C20 |
H17 |
1.080 |
1.080 |
| C21 |
H18 |
1.080 |
1.080 |
| C22 |
H19 |
1.080 |
1.080 |
| C23 |
H20 |
1.079 |
1.081 |
| C24 |
H21 |
1.080 |
1.080 |
| C25 |
H22 |
1.100 |
1.091 |
| C25 |
H23 |
1.100 |
1.089 |
| C25 |
H24 |
1.100 |
1.090 |
| N29 |
H25 |
1.000 |
0.971 |
| C30 |
H26 |
1.100 |
1.090 |
| C32 |
H27 |
1.100 |
1.090 |
| C32 |
H28 |
1.100 |
1.090 |
| C34 |
H29 |
1.080 |
1.080 |
| N35 |
H30 |
1.000 |
0.971 |
| C38 |
H31 |
1.080 |
1.079 |
| C39 |
H32 |
1.080 |
1.080 |
| C40 |
H33 |
1.080 |
1.080 |
| C41 |
H34 |
1.080 |
1.080 |
| O43 |
H35 |
0.950 |
0.967 |
Bond Angles for IRL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C4 |
H2 |
120.9 |
120.1 |
| C5 |
C6 |
H3 |
121.2 |
119.8 |
| C4 |
C3 |
C9 |
123.0 |
120.1 |
| C6 |
C1 |
C7 |
122.5 |
120.0 |
| C3 |
C9 |
N10 |
117.0 |
120.0 |
| C3 |
C2 |
H1 |
118.8 |
120.1 |
| C2 |
C1 |
C7 |
115.2 |
119.9 |
| C1 |
C2 |
H1 |
118.8 |
120.1 |
| C1 |
C7 |
H4 |
109.5 |
109.5 |
| C1 |
C7 |
H5 |
109.4 |
109.5 |
| C1 |
C7 |
H6 |
109.5 |
109.5 |
| C9 |
N10 |
C11 |
107.9 |
120.0 |
| N10 |
C11 |
C27 |
120.3 |
109.5 |
| N10 |
C11 |
H10 |
112.1 |
109.5 |
| C12 |
C11 |
C27 |
109.9 |
109.4 |
| C12 |
C11 |
H10 |
112.2 |
109.5 |
| C12 |
C13 |
C14 |
116.6 |
119.9 |
| C13 |
C12 |
H11 |
101.7 |
109.5 |
| C13 |
C12 |
H12 |
101.7 |
109.5 |
| C18 |
C17 |
H15 |
117.9 |
120.1 |
| C11 |
C27 |
N29 |
120.4 |
120.0 |
| C11 |
C27 |
O28 |
124.2 |
120.0 |
| C27 |
C11 |
H10 |
110.7 |
109.4 |
| C17 |
C16 |
C19 |
115.5 |
120.1 |
| C13 |
C14 |
C15 |
115.7 |
120.1 |
| C13 |
C14 |
H13 |
122.2 |
120.0 |
| C41 |
C40 |
H33 |
120.7 |
119.7 |
| C40 |
C41 |
H34 |
118.3 |
120.1 |
| C40 |
C39 |
H32 |
120.7 |
119.7 |
| C15 |
C14 |
H13 |
122.2 |
119.9 |
| C14 |
C15 |
H14 |
120.4 |
120.0 |
| C16 |
C15 |
H14 |
120.4 |
120.1 |
| C16 |
C19 |
C20 |
122.8 |
120.1 |
| C32 |
C30 |
H26 |
105.7 |
109.5 |
| C32 |
C33 |
C34 |
123.9 |
126.5 |
| C33 |
C32 |
H27 |
106.3 |
109.4 |
| C33 |
C32 |
H28 |
106.2 |
109.4 |
| C30 |
C31 |
O43 |
118.8 |
120.0 |
| C31 |
C30 |
H26 |
105.9 |
109.4 |
| C30 |
N29 |
H25 |
121.1 |
120.0 |
| O42 |
C31 |
O43 |
116.6 |
120.0 |
| C37 |
C36 |
C38 |
120.9 |
119.4 |
| C24 |
C23 |
H20 |
119.8 |
120.0 |
| C39 |
C38 |
H31 |
119.9 |
120.2 |
| C31 |
O43 |
H35 |
109.5 |
117.0 |
| O28 |
C27 |
N29 |
110.3 |
120.0 |
| C27 |
N29 |
H25 |
121.1 |
120.0 |
| C19 |
C20 |
C21 |
124.3 |
119.9 |
| C19 |
C20 |
H17 |
117.8 |
120.1 |
| C33 |
C34 |
N35 |
109.7 |
109.9 |
| C33 |
C34 |
H29 |
125.2 |
125.0 |
| C23 |
C22 |
H19 |
120.3 |
119.9 |
| C36 |
C38 |
H31 |
119.9 |
120.1 |
| C36 |
N35 |
H30 |
128.1 |
125.0 |
| C21 |
C20 |
H17 |
117.9 |
120.0 |
| C20 |
C21 |
H18 |
120.5 |
119.9 |
| N35 |
C34 |
H29 |
125.1 |
125.0 |
| C34 |
N35 |
H30 |
128.1 |
125.1 |
| C22 |
C21 |
H18 |
120.5 |
119.9 |
| H4 |
C7 |
H5 |
109.5 |
109.5 |
| H4 |
C7 |
H6 |
109.4 |
109.5 |
| H5 |
C7 |
H6 |
109.5 |
109.4 |
| H7 |
C8 |
H8 |
109.5 |
109.5 |
| H7 |
C8 |
H9 |
109.5 |
109.4 |
| H8 |
C8 |
H9 |
109.5 |
109.4 |
| H11 |
C12 |
H12 |
109.5 |
109.5 |
| H22 |
C25 |
H23 |
109.5 |
109.4 |
| H22 |
C25 |
H24 |
109.5 |
109.5 |
| H23 |
C25 |
H24 |
109.5 |
109.5 |
| H27 |
C32 |
H28 |
109.5 |
109.5 |
Torsion Angles for IRL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C5 |
C4 |
H2 |
359.8 |
360.0 |
| C8 |
C5 |
C6 |
H3 |
359.2 |
359.7 |
| C5 |
C4 |
C3 |
C9 |
179.3 |
180.0 |
| C6 |
C5 |
C4 |
H2 |
178.8 |
179.7 |
| C5 |
C6 |
C1 |
C7 |
180.0 |
179.7 |
| C4 |
C3 |
C9 |
N10 |
186.2 |
16.5 |
| C4 |
C3 |
C2 |
H1 |
178.6 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
180.2 |
179.7 |
| C6 |
C1 |
C2 |
H1 |
180.4 |
180.3 |
| C6 |
C1 |
C7 |
H4 |
90.1 |
269.7 |
| C6 |
C1 |
C7 |
H5 |
210.1 |
29.7 |
| C6 |
C1 |
C7 |
H6 |
330.1 |
149.7 |
| C9 |
C3 |
C2 |
H1 |
0.9 |
0.1 |
| C3 |
C9 |
N10 |
C11 |
117.4 |
174.7 |
| C3 |
C2 |
C1 |
C7 |
180.5 |
180.0 |
| C1 |
C2 |
C3 |
H1 |
180.0 |
179.9 |
| C6 |
C1 |
C2 |
C7 |
179.8 |
180.3 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
180.1 |
| C2 |
C1 |
C7 |
H4 |
269.9 |
90.0 |
| C2 |
C1 |
C7 |
H5 |
29.9 |
210.0 |
| C2 |
C1 |
C7 |
H6 |
149.9 |
330.0 |
| C7 |
C1 |
C2 |
H1 |
0.6 |
360.0 |
| H4 |
C7 |
C1 |
H5 |
240.0 |
240.0 |
| H4 |
C7 |
C1 |
H6 |
120.0 |
120.0 |
| H5 |
C7 |
C1 |
H6 |
240.0 |
240.1 |
| C9 |
N10 |
C11 |
C27 |
238.3 |
244.7 |
| C9 |
N10 |
C11 |
H10 |
11.0 |
4.7 |
| C25 |
N10 |
C11 |
C27 |
48.7 |
64.7 |
| C25 |
N10 |
C11 |
H10 |
181.4 |
184.6 |
| C12 |
C11 |
N10 |
C27 |
246.8 |
240.0 |
| C12 |
C11 |
N10 |
H10 |
114.1 |
120.1 |
| N10 |
C11 |
C27 |
N29 |
59.9 |
160.0 |
| N10 |
C11 |
C27 |
O28 |
212.1 |
340.0 |
| C27 |
C11 |
N10 |
H10 |
227.3 |
240.0 |
| N10 |
C11 |
C12 |
C27 |
122.5 |
120.0 |
| N10 |
C11 |
C12 |
H10 |
246.0 |
239.9 |
| C12 |
C11 |
C27 |
N29 |
162.1 |
280.0 |
| C12 |
C11 |
C27 |
O28 |
314.3 |
100.0 |
| C27 |
C11 |
C12 |
H10 |
123.6 |
119.9 |
| C13 |
C12 |
C11 |
C27 |
27.1 |
175.0 |
| C13 |
C12 |
C11 |
H10 |
263.5 |
55.1 |
| C12 |
C13 |
C14 |
C15 |
188.0 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
8.0 |
0.0 |
| H11 |
C12 |
C13 |
H12 |
113.0 |
120.0 |
| C18 |
C17 |
C16 |
C19 |
174.5 |
179.8 |
| C18 |
C13 |
C12 |
H11 |
10.9 |
149.8 |
| C18 |
C13 |
C12 |
H12 |
257.9 |
29.7 |
| C18 |
C13 |
C14 |
H13 |
176.9 |
180.3 |
| N10 |
C11 |
C27 |
H10 |
133.3 |
120.0 |
| C12 |
C11 |
C27 |
H10 |
235.5 |
240.0 |
| O28 |
C27 |
C11 |
N29 |
152.2 |
180.0 |
| C11 |
C27 |
N29 |
H25 |
176.9 |
0.0 |
| C17 |
C16 |
C15 |
H14 |
187.2 |
180.0 |
| C17 |
C16 |
C19 |
C20 |
169.1 |
360.0 |
| C14 |
C13 |
C12 |
H11 |
179.9 |
330.0 |
| C14 |
C13 |
C12 |
H12 |
66.8 |
209.9 |
| C15 |
C14 |
C13 |
H13 |
180.0 |
179.9 |
| C13 |
C14 |
C15 |
H14 |
176.2 |
180.0 |
| C41 |
C40 |
C39 |
H32 |
180.5 |
179.3 |
| C40 |
C39 |
C38 |
H31 |
179.7 |
180.1 |
| C13 |
C14 |
C15 |
H13 |
180.0 |
180.1 |
| C16 |
C15 |
C14 |
H14 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H13 |
176.2 |
180.0 |
| C14 |
C15 |
C16 |
H14 |
180.0 |
180.0 |
| C19 |
C16 |
C15 |
H14 |
9.2 |
360.0 |
| C16 |
C19 |
C20 |
C21 |
180.8 |
180.0 |
| C16 |
C19 |
C20 |
H17 |
0.8 |
360.0 |
| C32 |
C30 |
C31 |
O43 |
195.3 |
60.0 |
| C31 |
C30 |
C32 |
H26 |
246.9 |
240.1 |
| C32 |
C30 |
N29 |
H25 |
23.7 |
25.0 |
| C33 |
C32 |
C30 |
H26 |
259.1 |
305.0 |
| C32 |
C33 |
C34 |
N35 |
180.1 |
180.0 |
| C32 |
C33 |
C34 |
H29 |
0.0 |
360.0 |
| H27 |
C32 |
C33 |
H28 |
116.6 |
120.0 |
| C32 |
C30 |
C31 |
H26 |
112.9 |
120.0 |
| C31 |
C30 |
N29 |
H25 |
259.5 |
265.0 |
| O42 |
C31 |
C30 |
O43 |
185.4 |
180.0 |
| C30 |
C31 |
O43 |
H35 |
185.0 |
180.0 |
| C27 |
N29 |
C30 |
H25 |
180.0 |
180.0 |
| C30 |
C31 |
O42 |
O43 |
174.7 |
180.0 |
| O42 |
C31 |
C30 |
H26 |
267.8 |
120.0 |
| O42 |
C31 |
O43 |
H35 |
360.0 |
360.0 |
| C37 |
C33 |
C32 |
H27 |
49.5 |
324.7 |
| C37 |
C33 |
C32 |
H28 |
292.9 |
204.7 |
| C37 |
C33 |
C34 |
H29 |
180.3 |
180.2 |
| C37 |
C36 |
C38 |
H31 |
180.1 |
180.3 |
| C37 |
C36 |
N35 |
H30 |
179.8 |
179.8 |
| C24 |
C19 |
C20 |
H17 |
184.6 |
180.3 |
| C24 |
C23 |
C22 |
H19 |
182.0 |
179.7 |
| C36 |
C38 |
C39 |
H31 |
180.0 |
180.0 |
| O43 |
C31 |
C30 |
H26 |
82.4 |
300.0 |
| C11 |
C27 |
N29 |
O28 |
155.7 |
180.0 |
| N29 |
C27 |
C11 |
H10 |
286.6 |
40.0 |
| C30 |
N29 |
C27 |
H25 |
180.0 |
180.0 |
| C11 |
C27 |
O28 |
N29 |
205.4 |
180.0 |
| O28 |
C27 |
C11 |
H10 |
78.7 |
220.0 |
| O28 |
C27 |
N29 |
H25 |
21.2 |
180.0 |
| C21 |
C20 |
C19 |
H17 |
180.0 |
180.1 |
| C19 |
C20 |
C21 |
H18 |
177.3 |
180.0 |
| C34 |
C33 |
C32 |
H27 |
229.8 |
145.1 |
| C34 |
C33 |
C32 |
H28 |
113.2 |
25.0 |
| N35 |
C34 |
C33 |
H29 |
180.0 |
180.0 |
| C33 |
C34 |
N35 |
H30 |
179.9 |
180.0 |
| C23 |
C22 |
C21 |
H18 |
179.3 |
180.0 |
| C39 |
C38 |
C36 |
H31 |
180.0 |
180.0 |
| C38 |
C36 |
N35 |
H30 |
359.9 |
0.1 |
| C36 |
N35 |
C34 |
H29 |
179.9 |
180.0 |
| C34 |
N35 |
C36 |
H30 |
180.0 |
179.9 |
| C19 |
C20 |
C21 |
H17 |
180.0 |
179.9 |
| C22 |
C21 |
C20 |
H18 |
180.0 |
180.0 |
| C33 |
C34 |
N35 |
H29 |
180.0 |
180.0 |
| C36 |
N35 |
C34 |
H30 |
180.0 |
180.1 |
| C22 |
C21 |
C20 |
H17 |
177.3 |
180.0 |
| C20 |
C21 |
C22 |
H18 |
180.0 |
180.0 |
| H1 |
C2 |
C1 |
C7 |
0.6 |
360.0 |
| H2 |
C4 |
C3 |
C9 |
359.3 |
360.0 |
| H3 |
C6 |
C1 |
C7 |
360.0 |
0.3 |
| C1 |
C7 |
H4 |
H5 |
120.0 |
120.0 |
| C1 |
C7 |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
C7 |
H4 |
H6 |
120.0 |
119.9 |
| C1 |
C7 |
H5 |
H4 |
240.0 |
240.0 |
| C1 |
C7 |
H5 |
H6 |
120.0 |
120.0 |
| H4 |
C7 |
H5 |
H6 |
240.0 |
240.0 |
| C1 |
C7 |
H6 |
H4 |
120.0 |
120.1 |
| C1 |
C7 |
H6 |
H5 |
240.0 |
240.0 |
| H4 |
C7 |
H6 |
H5 |
120.0 |
120.0 |
| H8 |
C8 |
H7 |
H9 |
120.0 |
119.9 |
| H7 |
C8 |
H8 |
H9 |
240.0 |
240.1 |
| H7 |
C8 |
H9 |
H8 |
120.0 |
120.0 |
| N10 |
C11 |
H10 |
C27 |
222.7 |
240.0 |
| C12 |
C11 |
H10 |
C27 |
123.1 |
120.0 |
| H10 |
C11 |
C27 |
N29 |
286.6 |
40.0 |
| H10 |
C11 |
C27 |
O28 |
78.7 |
220.0 |
| H11 |
C12 |
C11 |
C27 |
150.5 |
295.0 |
| H11 |
C12 |
C11 |
H10 |
27.0 |
175.0 |
| H11 |
C12 |
C13 |
C14 |
179.9 |
330.0 |
| C13 |
C12 |
H11 |
H12 |
252.9 |
239.9 |
| H12 |
C12 |
C11 |
C27 |
263.6 |
55.0 |
| H12 |
C12 |
C11 |
H10 |
140.0 |
295.0 |
| H12 |
C12 |
C13 |
C14 |
66.8 |
209.9 |
| C13 |
C12 |
H12 |
H11 |
107.1 |
120.0 |
| C13 |
C14 |
H13 |
C15 |
180.0 |
179.9 |
| H13 |
C14 |
C15 |
H14 |
356.2 |
360.0 |
| H14 |
C15 |
C14 |
H13 |
356.2 |
360.0 |
| H15 |
C17 |
C16 |
C19 |
354.5 |
0.0 |
| H16 |
C18 |
C17 |
H15 |
356.8 |
359.7 |
| C19 |
C20 |
H17 |
C21 |
180.0 |
180.1 |
| H17 |
C20 |
C21 |
H18 |
357.3 |
0.0 |
| H18 |
C21 |
C20 |
H17 |
357.3 |
0.0 |
| H19 |
C22 |
C21 |
H18 |
359.2 |
0.0 |
| H20 |
C23 |
C22 |
H19 |
2.0 |
360.0 |
| H21 |
C24 |
C23 |
H20 |
0.0 |
360.0 |
| H23 |
C25 |
H22 |
H24 |
120.0 |
120.0 |
| H22 |
C25 |
H23 |
H24 |
240.0 |
240.0 |
| H22 |
C25 |
H24 |
H23 |
120.0 |
120.0 |
| H26 |
C30 |
C31 |
O43 |
82.4 |
300.0 |
| H26 |
C30 |
N29 |
H25 |
148.0 |
145.0 |
| H27 |
C32 |
C30 |
H26 |
20.8 |
64.9 |
| H27 |
C32 |
C33 |
C34 |
229.8 |
145.1 |
| C33 |
C32 |
H27 |
H28 |
245.6 |
240.0 |
| H28 |
C32 |
C30 |
H26 |
137.4 |
185.0 |
| H28 |
C32 |
C33 |
C34 |
113.2 |
25.0 |
| C33 |
C32 |
H28 |
H27 |
114.4 |
120.0 |
| C33 |
C34 |
H29 |
N35 |
180.0 |
180.0 |
| H29 |
C34 |
N35 |
H30 |
360.0 |
360.0 |
| H30 |
N35 |
C34 |
H29 |
360.0 |
360.0 |
| H32 |
C39 |
C38 |
H31 |
359.7 |
0.0 |
| H33 |
C40 |
C41 |
H34 |
359.5 |
358.9 |
| H33 |
C40 |
C39 |
H32 |
0.5 |
0.4 |
| H34 |
C41 |
C40 |
H33 |
359.5 |
358.9 |