PDB Chemical Component IQS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IQS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.407 |
1.363 |
| C1 |
C10 |
1.418 |
1.401 |
| C1 |
S |
1.784 |
1.760 |
| C2 |
C3 |
1.406 |
1.393 |
| C2 |
H2 |
1.103 |
1.079 |
| C3 |
C4 |
1.396 |
1.361 |
| C3 |
H3 |
1.102 |
1.081 |
| C4 |
C5 |
1.407 |
1.403 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.395 |
1.404 |
| C5 |
C10 |
1.425 |
1.418 |
| C6 |
N7 |
1.366 |
1.311 |
| C6 |
H6 |
1.104 |
1.080 |
| N7 |
C8 |
1.347 |
1.326 |
| C8 |
C9 |
1.394 |
1.361 |
| C8 |
H8 |
1.103 |
1.080 |
| C9 |
C10 |
1.399 |
1.407 |
| C9 |
H9 |
1.103 |
1.080 |
| S |
O1 |
1.440 |
1.421 |
| S |
O2 |
1.450 |
1.421 |
| S |
N1' |
1.614 |
1.656 |
| N1' |
C2' |
1.462 |
1.465 |
| N1' |
HN1 |
1.020 |
0.969 |
| C2' |
C3' |
1.528 |
1.529 |
| C2' |
H2'1 |
1.115 |
1.090 |
| C2' |
H2'2 |
1.115 |
1.089 |
| C3' |
N4' |
1.476 |
1.468 |
| C3' |
H3'1 |
1.116 |
1.091 |
| C3' |
H3'2 |
1.115 |
1.090 |
| N4' |
C5' |
1.471 |
1.469 |
| N4' |
HN4 |
1.020 |
1.009 |
| C5' |
H5'1 |
1.114 |
1.090 |
| C5' |
H5'2 |
1.115 |
1.090 |
| C5' |
H5'3 |
1.114 |
1.090 |
Bond Angles for IQS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C10 |
118.6 |
119.4 |
| C2 |
C1 |
S |
118.3 |
120.2 |
| C1 |
C2 |
C3 |
120.6 |
121.0 |
| C1 |
C2 |
H2 |
119.8 |
119.5 |
| C10 |
C1 |
S |
123.1 |
120.3 |
| C1 |
C10 |
C5 |
120.1 |
119.6 |
| C1 |
C10 |
C9 |
121.0 |
122.2 |
| C1 |
S |
O1 |
106.2 |
105.8 |
| C1 |
S |
O2 |
107.7 |
105.8 |
| C1 |
S |
N1' |
102.9 |
107.4 |
| C3 |
C2 |
H2 |
119.6 |
119.5 |
| C2 |
C3 |
C4 |
121.4 |
121.1 |
| C2 |
C3 |
H3 |
119.7 |
119.4 |
| C4 |
C3 |
H3 |
118.9 |
119.4 |
| C3 |
C4 |
C5 |
118.7 |
119.5 |
| C3 |
C4 |
H4 |
120.2 |
120.3 |
| C5 |
C4 |
H4 |
121.0 |
120.2 |
| C4 |
C5 |
C6 |
119.9 |
122.1 |
| C4 |
C5 |
C10 |
120.5 |
119.3 |
| C6 |
C5 |
C10 |
119.6 |
118.6 |
| C5 |
C6 |
N7 |
120.0 |
119.9 |
| C5 |
C6 |
H6 |
121.0 |
120.1 |
| C5 |
C10 |
C9 |
118.9 |
118.2 |
| N7 |
C6 |
H6 |
119.0 |
120.0 |
| C6 |
N7 |
C8 |
120.9 |
122.8 |
| N7 |
C8 |
C9 |
122.1 |
121.9 |
| N7 |
C8 |
H8 |
117.2 |
119.0 |
| C9 |
C8 |
H8 |
120.7 |
119.1 |
| C8 |
C9 |
C10 |
118.6 |
118.7 |
| C8 |
C9 |
H9 |
120.5 |
120.7 |
| C10 |
C9 |
H9 |
120.9 |
120.7 |
| O1 |
S |
O2 |
120.7 |
125.3 |
| O1 |
S |
N1' |
105.8 |
105.7 |
| O2 |
S |
N1' |
111.9 |
105.8 |
| S |
N1' |
C2' |
123.6 |
120.0 |
| S |
N1' |
HN1 |
107.2 |
120.1 |
| C2' |
N1' |
HN1 |
107.1 |
120.0 |
| N1' |
C2' |
C3' |
112.5 |
109.5 |
| N1' |
C2' |
H2'1 |
111.1 |
109.4 |
| N1' |
C2' |
H2'2 |
111.1 |
109.5 |
| C3' |
C2' |
H2'1 |
111.1 |
109.5 |
| C3' |
C2' |
H2'2 |
111.1 |
109.5 |
| C2' |
C3' |
N4' |
109.8 |
109.5 |
| C2' |
C3' |
H3'1 |
112.0 |
109.4 |
| C2' |
C3' |
H3'2 |
112.1 |
109.5 |
| H2'1 |
C2' |
H2'2 |
99.2 |
109.4 |
| N4' |
C3' |
H3'1 |
112.1 |
109.5 |
| N4' |
C3' |
H3'2 |
112.1 |
109.5 |
| C3' |
N4' |
C5' |
107.6 |
106.7 |
| C3' |
N4' |
HN4 |
112.9 |
106.7 |
| H3'1 |
C3' |
H3'2 |
98.3 |
109.4 |
| C5' |
N4' |
HN4 |
112.9 |
106.7 |
| N4' |
C5' |
H5'1 |
107.6 |
109.5 |
| N4' |
C5' |
H5'2 |
112.9 |
109.5 |
| N4' |
C5' |
H5'3 |
112.8 |
109.5 |
| H5'1 |
C5' |
H5'2 |
112.9 |
109.4 |
| H5'1 |
C5' |
H5'3 |
112.9 |
109.4 |
| H5'2 |
C5' |
H5'3 |
97.6 |
109.5 |
Torsion Angles for IQS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C1 |
C2 |
S |
180.3 |
180.3 |
| C2 |
C1 |
C10 |
C5 |
359.8 |
359.4 |
| C2 |
C1 |
C10 |
C9 |
179.8 |
180.2 |
| C2 |
C1 |
S |
O1 |
129.8 |
131.4 |
| C2 |
C1 |
S |
O2 |
359.1 |
356.6 |
| C2 |
C1 |
S |
N1' |
240.8 |
244.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
| C1 |
C2 |
C3 |
C4 |
0.0 |
360.0 |
| C1 |
C2 |
C3 |
H3 |
180.0 |
179.9 |
| C2 |
C1 |
C10 |
S |
179.7 |
179.7 |
| C10 |
C1 |
C2 |
C3 |
0.1 |
0.3 |
| C10 |
C1 |
C2 |
H2 |
180.1 |
180.3 |
| C10 |
C1 |
S |
O1 |
309.5 |
311.0 |
| C10 |
C1 |
S |
O2 |
178.9 |
176.2 |
| C10 |
C1 |
S |
N1' |
60.5 |
63.6 |
| C4 |
C5 |
C10 |
C1 |
0.1 |
0.5 |
| C6 |
C5 |
C10 |
C1 |
180.0 |
180.4 |
| C5 |
C10 |
C1 |
C9 |
180.1 |
179.2 |
| C8 |
C9 |
C10 |
C1 |
179.9 |
179.7 |
| C1 |
C10 |
C9 |
H9 |
359.9 |
359.4 |
| C2 |
C1 |
S |
C10 |
180.3 |
180.3 |
| S |
C1 |
C2 |
C3 |
179.8 |
180.0 |
| S |
C1 |
C2 |
H2 |
359.8 |
359.9 |
| S |
C1 |
C10 |
C5 |
180.1 |
179.7 |
| S |
C1 |
C10 |
C9 |
0.1 |
0.6 |
| O1 |
S |
C1 |
O2 |
130.6 |
134.8 |
| O1 |
S |
C1 |
N1' |
249.0 |
247.4 |
| O2 |
S |
C1 |
N1' |
118.4 |
112.6 |
| C1 |
S |
N1' |
C2' |
81.3 |
65.0 |
| C1 |
S |
N1' |
HN1 |
316.0 |
245.0 |
| C3 |
C2 |
C1 |
C10 |
0.1 |
0.3 |
| C3 |
C2 |
C1 |
S |
179.8 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
359.9 |
359.9 |
| C2 |
C3 |
C4 |
H4 |
179.9 |
180.0 |
| H2 |
C2 |
C1 |
C10 |
180.1 |
180.3 |
| H2 |
C2 |
C1 |
S |
359.8 |
359.9 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.1 |
| H2 |
C2 |
C3 |
C4 |
180.0 |
180.1 |
| H2 |
C2 |
C3 |
H3 |
0.0 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.9 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
180.1 |
180.0 |
| C3 |
C4 |
C5 |
C10 |
360.0 |
359.8 |
| H3 |
C3 |
C2 |
H2 |
0.0 |
360.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.1 |
| H3 |
C3 |
C4 |
C5 |
179.9 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
359.9 |
0.0 |
| C1 |
C10 |
C5 |
C4 |
0.1 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
179.9 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C10 |
180.1 |
180.2 |
| C4 |
C5 |
C6 |
N7 |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
359.9 |
0.0 |
| C4 |
C5 |
C10 |
C9 |
180.2 |
179.7 |
| H4 |
C4 |
C3 |
H3 |
359.9 |
0.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
0.1 |
360.0 |
| H4 |
C4 |
C5 |
C10 |
180.0 |
179.8 |
| C1 |
C10 |
C5 |
C6 |
180.0 |
180.4 |
| C6 |
C5 |
C4 |
H4 |
0.1 |
360.0 |
| C4 |
C5 |
C6 |
C10 |
179.9 |
179.8 |
| C6 |
C5 |
C10 |
C9 |
0.1 |
359.5 |
| N7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C5 |
C6 |
N7 |
C8 |
359.9 |
0.0 |
| C5 |
C10 |
C1 |
S |
180.1 |
179.7 |
| C1 |
C10 |
C5 |
C9 |
179.9 |
180.8 |
| C10 |
C5 |
C4 |
H4 |
180.0 |
179.8 |
| C4 |
C5 |
C10 |
C6 |
180.1 |
180.2 |
| C10 |
C5 |
C6 |
N7 |
0.0 |
0.2 |
| C10 |
C5 |
C6 |
H6 |
180.0 |
180.2 |
| C8 |
C9 |
C10 |
C5 |
359.9 |
0.5 |
| C5 |
C10 |
C9 |
H9 |
179.8 |
180.2 |
| N7 |
C6 |
C5 |
C10 |
0.0 |
0.2 |
| C5 |
C6 |
N7 |
H6 |
180.0 |
180.0 |
| C6 |
N7 |
C8 |
C9 |
0.0 |
0.0 |
| C6 |
N7 |
C8 |
H8 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C10 |
180.0 |
180.2 |
| C5 |
C6 |
H6 |
N7 |
180.0 |
180.0 |
| H6 |
C6 |
N7 |
C8 |
179.9 |
180.0 |
| C8 |
N7 |
C6 |
H6 |
179.9 |
180.0 |
| C9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| N7 |
C8 |
C9 |
C10 |
0.1 |
359.7 |
| N7 |
C8 |
C9 |
H9 |
180.1 |
180.0 |
| C1 |
C10 |
C9 |
C8 |
179.9 |
179.7 |
| C5 |
C10 |
C9 |
C8 |
359.9 |
0.5 |
| N7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
179.7 |
| N7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C8 |
C9 |
C10 |
180.1 |
179.7 |
| H8 |
C8 |
C9 |
H9 |
0.1 |
360.0 |
| C9 |
C10 |
C1 |
S |
0.1 |
0.6 |
| C1 |
C10 |
C9 |
C5 |
180.1 |
179.2 |
| C10 |
C9 |
C8 |
H8 |
180.1 |
179.7 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.3 |
| H9 |
C9 |
C8 |
H8 |
0.1 |
360.0 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
179.7 |
| C1 |
S |
O1 |
O2 |
237.2 |
236.8 |
| C1 |
S |
O1 |
N1' |
108.9 |
113.7 |
| O2 |
S |
O1 |
N1' |
231.7 |
236.9 |
| O1 |
S |
N1' |
C2' |
192.5 |
177.6 |
| O1 |
S |
N1' |
HN1 |
67.3 |
357.6 |
| C1 |
S |
O2 |
O1 |
122.1 |
123.2 |
| C1 |
S |
O2 |
N1' |
247.6 |
246.2 |
| O1 |
S |
O2 |
N1' |
125.5 |
123.0 |
| O2 |
S |
N1' |
C2' |
325.9 |
312.3 |
| O2 |
S |
N1' |
HN1 |
200.7 |
132.3 |
| C1 |
S |
N1' |
O1 |
248.7 |
247.4 |
| C1 |
S |
N1' |
O2 |
115.4 |
112.7 |
| O1 |
S |
N1' |
O2 |
226.7 |
225.3 |
| C2' |
N1' |
S |
HN1 |
125.2 |
180.0 |
| S |
N1' |
C2' |
C3' |
22.3 |
175.0 |
| S |
N1' |
C2' |
H2'1 |
147.6 |
55.0 |
| S |
N1' |
C2' |
H2'2 |
257.1 |
295.1 |
| S |
N1' |
C2' |
HN1 |
234.7 |
180.0 |
| C3' |
C2' |
N1' |
H2'1 |
234.7 |
120.0 |
| C3' |
C2' |
N1' |
H2'2 |
125.3 |
239.9 |
| N1' |
C2' |
C3' |
N4' |
134.1 |
180.0 |
| N1' |
C2' |
C3' |
H3'1 |
259.3 |
60.0 |
| N1' |
C2' |
C3' |
H3'2 |
8.8 |
300.1 |
| H2'1 |
C2' |
N1' |
H2'2 |
250.6 |
119.9 |
| S |
N1' |
HN1 |
C2' |
134.6 |
180.0 |
| HN1 |
N1' |
C2' |
C3' |
147.6 |
355.0 |
| HN1 |
N1' |
C2' |
H2'1 |
272.9 |
235.0 |
| HN1 |
N1' |
C2' |
H2'2 |
22.3 |
115.1 |
| C3' |
C2' |
N1' |
HN1 |
147.6 |
355.0 |
| N1' |
C2' |
C3' |
H2'1 |
125.3 |
240.0 |
| N1' |
C2' |
C3' |
H2'2 |
234.7 |
120.0 |
| H2'1 |
C2' |
C3' |
H2'2 |
109.4 |
240.0 |
| N4' |
C3' |
C2' |
H3'1 |
234.7 |
120.0 |
| N4' |
C3' |
C2' |
H3'2 |
125.3 |
239.9 |
| C2' |
C3' |
N4' |
C5' |
248.3 |
180.1 |
| C2' |
C3' |
N4' |
HN4 |
123.0 |
66.2 |
| H3'1 |
C3' |
C2' |
H3'2 |
250.6 |
119.9 |
| H2'1 |
C2' |
N1' |
HN1 |
272.9 |
235.0 |
| N1' |
C2' |
H2'1 |
C3' |
233.9 |
120.0 |
| N1' |
C2' |
H2'1 |
H2'2 |
117.0 |
240.1 |
| C3' |
C2' |
H2'1 |
H2'2 |
243.1 |
120.1 |
| H2'1 |
C2' |
C3' |
N4' |
8.8 |
300.0 |
| H2'1 |
C2' |
C3' |
H3'1 |
134.0 |
180.0 |
| H2'1 |
C2' |
C3' |
H3'2 |
243.5 |
60.0 |
| H2'2 |
C2' |
N1' |
HN1 |
22.3 |
115.1 |
| N1' |
C2' |
H2'2 |
C3' |
126.1 |
239.9 |
| N1' |
C2' |
H2'2 |
H2'1 |
243.0 |
119.9 |
| C3' |
C2' |
H2'2 |
H2'1 |
116.9 |
240.0 |
| H2'2 |
C2' |
C3' |
N4' |
259.4 |
60.0 |
| H2'2 |
C2' |
C3' |
H3'1 |
24.6 |
299.9 |
| H2'2 |
C2' |
C3' |
H3'2 |
134.1 |
180.0 |
| N4' |
C3' |
C2' |
H2'1 |
8.8 |
300.0 |
| N4' |
C3' |
C2' |
H2'2 |
259.4 |
60.0 |
| C2' |
C3' |
N4' |
H3'1 |
125.2 |
240.0 |
| C2' |
C3' |
N4' |
H3'2 |
234.7 |
120.1 |
| H3'1 |
C3' |
N4' |
H3'2 |
109.4 |
240.1 |
| C5' |
N4' |
C3' |
HN4 |
125.3 |
113.8 |
| C3' |
N4' |
C5' |
H5'1 |
180.0 |
180.0 |
| C3' |
N4' |
C5' |
H5'2 |
305.2 |
299.9 |
| C3' |
N4' |
C5' |
H5'3 |
54.7 |
60.0 |
| H3'1 |
C3' |
C2' |
H2'1 |
134.0 |
180.0 |
| H3'1 |
C3' |
C2' |
H2'2 |
24.6 |
299.9 |
| C2' |
C3' |
H3'1 |
N4' |
236.0 |
120.1 |
| C2' |
C3' |
H3'1 |
H3'2 |
118.0 |
240.0 |
| N4' |
C3' |
H3'1 |
H3'2 |
242.0 |
120.0 |
| H3'1 |
C3' |
N4' |
C5' |
123.1 |
300.0 |
| H3'1 |
C3' |
N4' |
HN4 |
357.8 |
186.2 |
| H3'2 |
C3' |
C2' |
H2'1 |
243.5 |
60.0 |
| H3'2 |
C3' |
C2' |
H2'2 |
134.1 |
180.0 |
| C2' |
C3' |
H3'2 |
N4' |
124.1 |
239.9 |
| C2' |
C3' |
H3'2 |
H3'1 |
242.0 |
119.9 |
| N4' |
C3' |
H3'2 |
H3'1 |
118.0 |
240.0 |
| H3'2 |
C3' |
N4' |
C5' |
13.6 |
60.0 |
| H3'2 |
C3' |
N4' |
HN4 |
248.3 |
306.2 |
| C5' |
N4' |
C3' |
H3'1 |
123.1 |
300.0 |
| C5' |
N4' |
C3' |
H3'2 |
13.6 |
60.0 |
| C3' |
N4' |
C5' |
HN4 |
234.7 |
246.2 |
| H5'1 |
C5' |
N4' |
H5'2 |
234.8 |
240.1 |
| H5'1 |
C5' |
N4' |
H5'3 |
125.3 |
120.0 |
| H5'2 |
C5' |
N4' |
H5'3 |
250.5 |
239.9 |
| HN4 |
N4' |
C3' |
H3'1 |
357.8 |
186.2 |
| HN4 |
N4' |
C3' |
H3'2 |
248.3 |
306.2 |
| C3' |
N4' |
HN4 |
C5' |
122.4 |
113.8 |
| HN4 |
N4' |
C5' |
H5'1 |
305.3 |
293.8 |
| HN4 |
N4' |
C5' |
H5'2 |
70.5 |
53.7 |
| HN4 |
N4' |
C5' |
H5'3 |
180.0 |
173.8 |
| H5'1 |
C5' |
N4' |
HN4 |
305.3 |
293.8 |
| N4' |
C5' |
H5'1 |
H5'2 |
125.2 |
120.0 |
| N4' |
C5' |
H5'1 |
H5'3 |
234.8 |
240.0 |
| H5'2 |
C5' |
H5'1 |
H5'3 |
109.6 |
120.0 |
| H5'2 |
C5' |
N4' |
HN4 |
70.5 |
53.7 |
| N4' |
C5' |
H5'2 |
H5'1 |
237.7 |
240.0 |
| N4' |
C5' |
H5'2 |
H5'3 |
118.8 |
120.1 |
| H5'1 |
C5' |
H5'2 |
H5'3 |
241.1 |
240.0 |
| H5'3 |
C5' |
N4' |
HN4 |
180.0 |
173.8 |
| N4' |
C5' |
H5'3 |
H5'1 |
122.3 |
120.0 |
| N4' |
C5' |
H5'3 |
H5'2 |
241.2 |
239.9 |
| H5'1 |
C5' |
H5'3 |
H5'2 |
118.9 |
119.9 |