PDB Chemical Component IPT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IPT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.547 1.529
C1 O5 1.524 1.425
C1 S1 1.402 1.814
C1 H1 1.114 1.090
C2 O2 1.448 1.429
C2 C3 1.553 1.532
C2 H2 1.116 1.090
O2 HO2 0.951 0.966
C3 O3 1.386 1.429
C3 C4 1.694 1.531
C3 H3 1.114 1.090
O3 HO3 0.950 0.967
C4 O4 1.405 1.428
C4 C5 1.489 1.531
C4 H4 1.115 1.090
O4 HO4 0.949 0.966
C5 O5 1.455 1.425
C5 C6 1.554 1.531
C5 H5 1.114 1.090
C6 O6 1.371 1.429
C6 H61 1.115 1.089
C6 H62 1.114 1.090
O6 HO6 0.950 0.967
S1 C1' 1.480 1.813
C1' C2' 1.664 1.529
C1' C3' 1.618 1.530
C1' H1' 1.115 1.090
C2' H2'1 1.115 1.090
C2' H2'2 1.115 1.090
C2' H2'3 1.116 1.089
C3' H3'1 1.115 1.089
C3' H3'2 1.114 1.091
C3' H3'3 1.115 1.089

Bond Angles for IPT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O5 118.7 109.8
C2 C1 S1 107.4 109.4
C2 C1 H1 107.8 109.4
C1 C2 O2 110.8 109.6
C1 C2 C3 100.0 109.0
C1 C2 H2 116.6 109.6
O5 C1 S1 117.6 109.4
O5 C1 H1 94.6 109.4
C1 O5 C5 125.0 107.6
S1 C1 H1 109.3 109.4
C1 S1 C1' 113.0 100.0
O2 C2 C3 114.6 109.6
O2 C2 H2 102.5 109.5
C2 O2 HO2 110.8 106.9
C3 C2 H2 112.8 109.5
C2 C3 O3 101.8 109.8
C2 C3 C4 119.6 108.6
C2 C3 H3 109.6 109.6
O3 C3 C4 113.4 109.6
O3 C3 H3 116.3 109.6
C3 O3 HO3 101.8 106.8
C4 C3 H3 97.0 109.6
C3 C4 O4 110.0 109.7
C3 C4 C5 120.5 109.0
C3 C4 H4 99.2 109.5
O4 C4 C5 102.0 109.6
O4 C4 H4 118.6 109.5
C4 O4 HO4 110.0 106.8
C5 C4 H4 107.6 109.5
C4 C5 O5 100.9 109.8
C4 C5 C6 112.0 109.3
C4 C5 H5 112.1 109.4
O5 C5 C6 105.3 109.5
O5 C5 H5 118.2 109.4
C6 C5 H5 108.1 109.4
C5 C6 O6 114.0 109.4
C5 C6 H61 110.5 109.5
C5 C6 H62 110.5 109.4
O6 C6 H61 110.5 109.6
O6 C6 H62 110.5 109.4
C6 O6 HO6 114.1 106.8
H61 C6 H62 99.8 109.5
S1 C1' C2' 121.8 109.5
S1 C1' C3' 117.3 109.5
S1 C1' H1' 91.3 109.4
C2' C1' C3' 108.7 109.5
C2' C1' H1' 104.1 109.5
C1' C2' H2'1 121.9 109.5
C1' C2' H2'2 107.8 109.5
C1' C2' H2'3 107.8 109.5
C3' C1' H1' 110.8 109.4
C1' C3' H3'1 117.3 109.4
C1' C3' H3'2 109.3 109.5
C1' C3' H3'3 109.4 109.5
H2'1 C2' H2'2 107.8 109.5
H2'1 C2' H2'3 107.8 109.4
H2'2 C2' H2'3 102.0 109.6
H3'1 C3' H3'2 109.4 109.5
H3'1 C3' H3'3 109.4 109.5
H3'2 C3' H3'3 100.8 109.5

Torsion Angles for IPT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5 C1 C2 S1 223.5 239.9
O5 C1 C2 H1 105.8 120.1
C2 C1 O5 C5 298.8 292.4
S1 C1 C2 H1 242.2 240.2
C2 C1 S1 C1' 241.9 179.8
O2 C2 C1 C3 121.4 119.9
O2 C2 C1 H2 243.3 239.8
C1 C2 O2 HO2 180.0 60.4
C3 C2 C1 H2 122.0 119.9
C1 C2 C3 O3 194.3 186.4
C1 C2 C3 C4 320.1 306.2
C1 C2 C3 H3 70.6 66.0
C2 C1 O5 S1 132.2 120.1
C2 C1 O5 H1 246.8 239.9
O5 C1 C2 O2 167.8 181.2
O5 C1 C2 C3 46.4 61.3
O5 C1 C2 H2 284.5 301.4
S1 C1 O5 H1 114.6 119.8
O5 C1 S1 C1' 18.9 300.2
C4 C5 O5 C1 49.1 67.6
C1 O5 C5 C6 165.7 187.6
C1 O5 C5 H5 286.6 307.4
C2 C1 S1 O5 223.0 239.6
C2 C1 S1 H1 116.8 119.8
S1 C1 C2 O2 304.2 301.3
S1 C1 C2 C3 182.9 181.4
S1 C1 C2 H2 60.9 61.5
O5 C1 S1 H1 253.8 240.2
S1 C1 O5 C5 166.7 172.3
C1 S1 C1' C2' 45.5 180.0
C1 S1 C1' C3' 267.3 300.0
C1 S1 C1' H1' 153.0 59.9
C2 C1 H1 O5 122.1 120.3
C2 C1 H1 S1 243.5 240.2
H1 C1 C2 O2 62.0 61.1
H1 C1 C2 C3 300.6 301.2
H1 C1 C2 H2 178.7 181.3
O5 C1 H1 S1 121.4 119.8
H1 C1 O5 C5 52.0 52.5
H1 C1 S1 C1' 125.1 60.0
O2 C2 C1 O5 167.8 181.2
O2 C2 C1 S1 304.2 301.3
O2 C2 C1 H1 62.0 61.1
C1 C2 O2 C3 247.7 240.4
C1 C2 O2 H2 125.1 120.3
C3 C2 O2 H2 237.4 239.9
O2 C2 C3 O3 75.7 66.5
O2 C2 C3 C4 201.5 186.3
O2 C2 C3 H3 312.1 306.1
C3 C2 C1 O5 46.4 61.3
C3 C2 C1 S1 182.9 181.4
C3 C2 C1 H1 300.6 301.2
C1 C2 C3 O2 118.6 119.9
C1 C2 C3 H2 235.4 240.1
O2 C2 C3 H2 116.9 120.1
C3 C2 O2 HO2 292.3 180.0
O3 C3 C2 C4 234.2 240.2
O3 C3 C2 H3 123.7 120.4
C2 C3 O3 HO3 180.0 299.2
C4 C3 C2 H3 249.4 240.2
C2 C3 C4 O4 285.8 293.8
C2 C3 C4 C5 43.9 53.8
C2 C3 C4 H4 160.7 173.6
H2 C2 C1 O5 284.5 301.4
H2 C2 C1 S1 60.9 61.5
H2 C2 C1 H1 178.7 181.3
C1 C2 H2 O2 238.8 239.7
C1 C2 H2 C3 115.0 119.6
O2 C2 H2 C3 236.2 239.8
H2 C2 O2 HO2 54.9 300.2
H2 C2 C3 O3 318.9 306.3
H2 C2 C3 C4 84.6 66.1
H2 C2 C3 H3 195.2 185.9
HO2 O2 C2 C3 292.3 180.0
HO2 O2 C2 H2 54.9 300.2
O3 C3 C2 H2 318.9 306.3
C2 C3 O3 C4 129.7 119.2
C2 C3 O3 H3 241.0 239.6
C4 C3 O3 H3 111.2 120.3
O3 C3 C4 O4 45.9 53.7
O3 C3 C4 C5 164.0 173.7
O3 C3 C4 H4 280.8 293.5
C4 C3 C2 H2 84.6 66.1
C2 C3 C4 O3 239.9 240.1
C2 C3 C4 H3 117.3 119.8
O3 C3 C4 H3 237.4 239.7
C4 C3 O3 HO3 50.3 180.0
O4 C4 C3 C5 241.9 240.0
O4 C4 C3 H4 125.1 120.2
C3 C4 O4 HO4 180.0 299.5
C5 C4 C3 H4 243.2 240.2
C3 C4 C5 O5 321.2 298.7
C3 C4 C5 C6 209.6 178.6
C3 C4 C5 H5 87.8 58.8
H3 C3 C2 H2 195.2 185.9
C2 C3 H3 O3 114.7 120.5
C2 C3 H3 C4 235.1 240.8
O3 C3 H3 C4 120.5 120.3
H3 C3 O3 HO3 299.0 59.7
H3 C3 C4 O4 168.5 174.0
H3 C3 C4 C5 286.6 294.0
H3 C3 C4 H4 43.4 53.8
HO3 O3 C3 C4 50.3 180.0
HO3 O3 C3 H3 299.0 59.7
O4 C4 C3 H3 168.5 174.0
C3 C4 O4 C5 129.0 119.6
C3 C4 O4 H4 246.9 239.8
C5 C4 O4 H4 117.9 120.2
O4 C4 C5 O5 83.2 58.7
O4 C4 C5 C6 331.6 298.6
O4 C4 C5 H5 209.9 178.8
C1 O5 C5 C4 49.1 67.6
C5 C4 C3 H3 286.6 294.0
C3 C4 C5 O4 238.0 240.0
C3 C4 C5 H4 112.4 119.8
O4 C4 C5 H4 234.5 239.8
C5 C4 O4 HO4 51.0 180.0
O5 C5 C4 C6 111.6 120.1
O5 C5 C4 H5 233.4 239.9
C6 C5 C4 H5 121.8 119.8
C4 C5 C6 O6 315.0 180.2
C4 C5 C6 H61 80.2 300.3
C4 C5 C6 H62 189.7 60.4
H4 C4 C3 H3 43.4 53.8
C3 C4 H4 O4 118.8 120.3
C3 C4 H4 C5 233.8 240.5
O4 C4 H4 C5 114.9 120.2
H4 C4 O4 HO4 293.1 59.8
H4 C4 C5 O5 208.7 178.9
H4 C4 C5 C6 97.1 58.8
H4 C4 C5 H5 335.4 299.0
HO4 O4 C4 C5 51.0 180.0
HO4 O4 C4 H4 293.1 59.8
C5 O5 C1 S1 166.7 172.3
C5 O5 C1 H1 52.0 52.5
O5 C5 C4 H4 208.7 178.9
C4 C5 O5 C6 243.4 240.0
C4 C5 O5 H5 122.5 120.1
C6 C5 O5 H5 239.1 240.2
O5 C5 C6 O6 206.2 59.9
O5 C5 C6 H61 331.4 180.0
O5 C5 C6 H62 80.9 300.0
C6 C5 C4 H4 97.1 58.8
C4 C5 C6 O5 108.8 120.3
C4 C5 C6 H5 236.0 240.2
O5 C5 C6 H5 127.2 119.9
O6 C6 C5 H61 234.8 239.9
O6 C6 C5 H62 125.3 119.9
C5 C6 O6 HO6 180.0 180.0
H61 C6 C5 H62 250.5 240.0
H5 C5 C4 H4 335.4 299.0
C4 C5 H5 O5 243.4 239.7
C4 C5 H5 C6 123.9 119.8
O5 C5 H5 C6 240.6 240.1
H5 C5 C6 O6 79.0 300.1
H5 C5 C6 H61 204.2 60.2
H5 C5 C6 H62 313.7 180.2
O6 C6 C5 H5 79.0 300.1
C5 C6 O6 H61 125.2 120.1
C5 C6 O6 H62 234.7 240.1
H61 C6 O6 H62 109.5 120.1
H61 C6 C5 H5 204.2 60.2
C5 C6 H61 O6 232.8 240.0
C5 C6 H61 H62 116.4 119.9
O6 C6 H61 H62 243.6 240.0
H61 C6 O6 HO6 54.8 59.9
H62 C6 C5 H5 313.7 180.2
C5 C6 H62 O6 127.2 119.9
C5 C6 H62 H61 243.6 240.0
O6 C6 H62 H61 116.4 120.1
H62 C6 O6 HO6 305.2 299.9
HO6 O6 C6 H61 54.8 59.9
HO6 O6 C6 H62 305.2 299.9
C1' S1 C1 H1 125.1 60.0
C2' C1' S1 C3' 138.2 240.0
C2' C1' S1 H1' 252.5 120.0
S1 C1' C2' H2'1 180.0 180.0
S1 C1' C2' H2'2 305.3 300.0
S1 C1' C2' H2'3 54.7 60.1
C3' C1' S1 H1' 114.3 240.1
S1 C1' C3' H3'1 180.0 300.0
S1 C1' C3' H3'2 305.2 60.0
S1 C1' C3' H3'3 54.7 180.0
S1 C1' C2' C3' 218.7 120.0
S1 C1' C2' H1' 100.6 240.0
C3' C1' C2' H1' 241.8 120.0
C2' C1' C3' H3'1 36.7 60.0
C2' C1' C3' H3'2 162.0 180.0
C2' C1' C3' H3'3 271.4 300.0
H2'1 C2' C1' H2'2 234.7 240.0
H2'1 C2' C1' H2'3 125.2 119.9
H2'2 C2' C1' H2'3 250.6 239.9
S1 C1' C3' C2' 143.3 240.0
S1 C1' C3' H1' 257.1 120.0
C2' C1' C3' H1' 113.8 240.0
C3' C1' C2' H2'1 321.3 60.0
C3' C1' C2' H2'2 86.6 179.9
C3' C1' C2' H2'3 196.0 300.1
H3'1 C3' C1' H3'2 234.8 240.0
H3'1 C3' C1' H3'3 125.3 120.1
H3'2 C3' C1' H3'3 250.5 240.0
S1 C1' H1' C2' 236.6 120.0
S1 C1' H1' C3' 120.0 240.0
C2' C1' H1' C3' 243.3 120.0
H1' C1' C2' H2'1 79.4 300.0
H1' C1' C2' H2'2 204.8 60.0
H1' C1' C2' H2'3 314.2 180.1
H1' C1' C3' H3'1 282.9 180.1
H1' C1' C3' H3'2 48.1 300.0
H1' C1' C3' H3'3 157.6 60.0
H2'1 C2' C1' C3' 321.3 60.0
H2'1 C2' C1' H1' 79.4 300.0
C1' C2' H2'1 H2'2 125.3 120.0
C1' C2' H2'1 H2'3 234.7 240.0
H2'2 C2' H2'1 H2'3 109.4 120.0
H2'2 C2' C1' C3' 86.6 179.9
H2'2 C2' C1' H1' 204.8 60.0
C1' C2' H2'2 H2'1 226.7 240.0
C1' C2' H2'2 H2'3 113.4 120.1
H2'1 C2' H2'2 H2'3 246.7 240.1
H2'3 C2' C1' C3' 196.0 300.1
H2'3 C2' C1' H1' 314.2 180.1
C1' C2' H2'3 H2'1 133.2 119.9
C1' C2' H2'3 H2'2 246.6 239.9
H2'1 C2' H2'3 H2'2 113.4 120.0
H3'1 C3' C1' H1' 282.9 180.1
C1' C3' H3'1 H3'2 125.2 120.0
C1' C3' H3'1 H3'3 234.8 240.0
H3'2 C3' H3'1 H3'3 109.6 120.0
H3'2 C3' C1' H1' 48.1 300.0
C1' C3' H3'2 H3'1 230.3 240.1
C1' C3' H3'2 H3'3 115.1 120.0
H3'1 C3' H3'2 H3'3 244.8 239.9
H3'3 C3' C1' H1' 157.6 60.0
C1' C3' H3'3 H3'1 129.7 120.0
C1' C3' H3'3 H3'2 244.9 240.0
H3'1 C3' H3'3 H3'2 115.2 120.0