PDB Chemical Component IPR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IPR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| P11 |
O14 |
1.510 |
1.610 |
| P11 |
O12 |
1.494 |
1.609 |
| P11 |
O13 |
1.509 |
1.480 |
| P11 |
O10 |
1.602 |
1.609 |
| O14 |
H14 |
0.950 |
0.967 |
| O12 |
H12 |
0.951 |
0.967 |
| O10 |
P7 |
1.595 |
1.611 |
| P7 |
O8 |
1.513 |
1.608 |
| P7 |
O9 |
1.514 |
1.478 |
| P7 |
O6 |
1.603 |
1.609 |
| O8 |
HO8 |
0.950 |
0.967 |
| O6 |
C5 |
1.434 |
1.428 |
| C5 |
C4 |
1.505 |
1.530 |
| C5 |
HC51 |
1.115 |
1.091 |
| C5 |
HC52 |
1.115 |
1.089 |
| C4 |
C2 |
1.516 |
1.530 |
| C4 |
HC41 |
1.115 |
1.091 |
| C4 |
HC42 |
1.115 |
1.090 |
| C2 |
C1 |
1.520 |
1.530 |
| C2 |
C3 |
1.533 |
1.529 |
| C2 |
HC2 |
1.114 |
1.090 |
| C1 |
HC11 |
1.115 |
1.090 |
| C1 |
HC12 |
1.115 |
1.090 |
| C1 |
HC13 |
1.114 |
1.090 |
| C3 |
HC31 |
1.115 |
1.089 |
| C3 |
HC32 |
1.114 |
1.091 |
| C3 |
HC33 |
1.115 |
1.090 |
Bond Angles for IPR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O14 |
P11 |
O12 |
110.0 |
109.5 |
| O14 |
P11 |
O13 |
110.9 |
109.4 |
| O14 |
P11 |
O10 |
105.6 |
109.5 |
| P11 |
O14 |
H14 |
110.0 |
106.8 |
| O12 |
P11 |
O13 |
116.8 |
109.5 |
| O12 |
P11 |
O10 |
106.0 |
109.5 |
| P11 |
O12 |
H12 |
110.0 |
106.7 |
| O13 |
P11 |
O10 |
106.7 |
109.5 |
| P11 |
O10 |
P7 |
122.9 |
106.8 |
| O10 |
P7 |
O8 |
110.1 |
109.5 |
| O10 |
P7 |
O9 |
108.3 |
109.4 |
| O10 |
P7 |
O6 |
98.4 |
109.4 |
| O8 |
P7 |
O9 |
119.7 |
109.5 |
| O8 |
P7 |
O6 |
109.7 |
109.5 |
| P7 |
O8 |
HO8 |
110.1 |
106.8 |
| O9 |
P7 |
O6 |
108.5 |
109.5 |
| P7 |
O6 |
C5 |
121.6 |
106.8 |
| O6 |
C5 |
C4 |
106.9 |
109.5 |
| O6 |
C5 |
HC51 |
113.2 |
109.5 |
| O6 |
C5 |
HC52 |
113.2 |
109.5 |
| C4 |
C5 |
HC51 |
113.1 |
109.4 |
| C4 |
C5 |
HC52 |
113.1 |
109.5 |
| C5 |
C4 |
C2 |
117.7 |
109.5 |
| C5 |
C4 |
HC41 |
109.3 |
109.4 |
| C5 |
C4 |
HC42 |
109.3 |
109.5 |
| HC51 |
C5 |
HC52 |
97.3 |
109.4 |
| C2 |
C4 |
HC41 |
109.2 |
109.4 |
| C2 |
C4 |
HC42 |
109.2 |
109.5 |
| C4 |
C2 |
C1 |
118.0 |
109.5 |
| C4 |
C2 |
C3 |
117.5 |
109.5 |
| C4 |
C2 |
HC2 |
103.0 |
109.4 |
| HC41 |
C4 |
HC42 |
100.8 |
109.4 |
| C1 |
C2 |
C3 |
121.4 |
109.5 |
| C1 |
C2 |
HC2 |
91.7 |
109.5 |
| C2 |
C1 |
HC11 |
118.0 |
109.5 |
| C2 |
C1 |
HC12 |
109.2 |
109.5 |
| C2 |
C1 |
HC13 |
109.2 |
109.4 |
| C3 |
C2 |
HC2 |
93.0 |
109.5 |
| C2 |
C3 |
HC31 |
117.5 |
109.5 |
| C2 |
C3 |
HC32 |
109.3 |
109.5 |
| C2 |
C3 |
HC33 |
109.3 |
109.5 |
| HC11 |
C1 |
HC12 |
109.1 |
109.5 |
| HC11 |
C1 |
HC13 |
109.1 |
109.4 |
| HC12 |
C1 |
HC13 |
100.9 |
109.5 |
| HC31 |
C3 |
HC32 |
109.3 |
109.4 |
| HC31 |
C3 |
HC33 |
109.3 |
109.5 |
| HC32 |
C3 |
HC33 |
100.9 |
109.4 |
Torsion Angles for IPR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O12 |
P11 |
O14 |
O13 |
229.2 |
120.0 |
| O12 |
P11 |
O14 |
O10 |
114.0 |
240.0 |
| O14 |
P11 |
O12 |
H12 |
180.0 |
60.0 |
| O13 |
P11 |
O14 |
O10 |
244.8 |
120.0 |
| O14 |
P11 |
O10 |
P7 |
204.4 |
180.0 |
| O14 |
P11 |
O12 |
O13 |
127.6 |
240.1 |
| O14 |
P11 |
O12 |
O10 |
246.2 |
120.0 |
| O12 |
P11 |
O14 |
H14 |
180.0 |
59.9 |
| O13 |
P11 |
O12 |
O10 |
118.6 |
240.0 |
| O12 |
P11 |
O10 |
P7 |
87.6 |
300.0 |
| O14 |
P11 |
O13 |
O12 |
232.9 |
120.0 |
| O14 |
P11 |
O13 |
O10 |
114.6 |
240.0 |
| O13 |
P11 |
O14 |
H14 |
310.8 |
299.9 |
| O12 |
P11 |
O13 |
O10 |
241.7 |
120.0 |
| O13 |
P11 |
O12 |
H12 |
52.4 |
179.9 |
| O13 |
P11 |
O10 |
P7 |
322.5 |
60.0 |
| O14 |
P11 |
O10 |
O12 |
116.7 |
240.0 |
| O14 |
P11 |
O10 |
O13 |
241.9 |
119.9 |
| O10 |
P11 |
O14 |
H14 |
66.0 |
179.9 |
| O12 |
P11 |
O10 |
O13 |
125.2 |
240.0 |
| O10 |
P11 |
O12 |
H12 |
293.8 |
300.0 |
| P11 |
O10 |
P7 |
O8 |
327.5 |
300.0 |
| P11 |
O10 |
P7 |
O9 |
100.2 |
60.0 |
| P11 |
O10 |
P7 |
O6 |
212.9 |
180.0 |
| H14 |
O14 |
P11 |
O12 |
180.0 |
59.9 |
| H14 |
O14 |
P11 |
O13 |
310.8 |
299.9 |
| H14 |
O14 |
P11 |
O10 |
66.0 |
179.9 |
| H12 |
O12 |
P11 |
O13 |
52.4 |
179.9 |
| H12 |
O12 |
P11 |
O10 |
293.8 |
300.0 |
| O8 |
P7 |
O10 |
O9 |
227.4 |
240.0 |
| O8 |
P7 |
O10 |
O6 |
114.7 |
120.0 |
| O10 |
P7 |
O8 |
HO8 |
180.1 |
300.0 |
| O9 |
P7 |
O10 |
O6 |
247.3 |
240.0 |
| O10 |
P7 |
O6 |
C5 |
321.2 |
180.0 |
| O10 |
P7 |
O8 |
O9 |
126.5 |
120.0 |
| O10 |
P7 |
O8 |
O6 |
252.8 |
240.0 |
| O9 |
P7 |
O8 |
O6 |
126.3 |
120.1 |
| O8 |
P7 |
O6 |
C5 |
206.2 |
60.0 |
| O10 |
P7 |
O9 |
O8 |
232.7 |
240.0 |
| O10 |
P7 |
O9 |
O6 |
105.8 |
120.0 |
| O8 |
P7 |
O9 |
O6 |
233.2 |
240.0 |
| O9 |
P7 |
O8 |
HO8 |
53.6 |
180.0 |
| O9 |
P7 |
O6 |
C5 |
73.8 |
299.9 |
| O10 |
P7 |
O6 |
O8 |
115.0 |
120.0 |
| O10 |
P7 |
O6 |
O9 |
247.4 |
240.0 |
| O8 |
P7 |
O6 |
O9 |
132.4 |
120.1 |
| O6 |
P7 |
O8 |
HO8 |
287.3 |
60.0 |
| P7 |
O6 |
C5 |
C4 |
192.4 |
179.9 |
| P7 |
O6 |
C5 |
HC51 |
317.6 |
60.0 |
| P7 |
O6 |
C5 |
HC52 |
67.2 |
300.1 |
| HO8 |
O8 |
P7 |
O9 |
53.6 |
180.0 |
| HO8 |
O8 |
P7 |
O6 |
287.3 |
60.0 |
| C4 |
C5 |
O6 |
HC51 |
234.8 |
119.9 |
| C4 |
C5 |
O6 |
HC52 |
125.2 |
239.9 |
| O6 |
C5 |
C4 |
C2 |
20.4 |
180.0 |
| O6 |
C5 |
C4 |
HC41 |
145.7 |
60.0 |
| O6 |
C5 |
C4 |
HC42 |
255.2 |
300.1 |
| HC51 |
C5 |
O6 |
HC52 |
250.5 |
119.9 |
| O6 |
C5 |
C4 |
HC51 |
125.3 |
240.0 |
| O6 |
C5 |
C4 |
HC52 |
234.8 |
120.1 |
| HC51 |
C5 |
C4 |
HC52 |
109.5 |
240.1 |
| C2 |
C4 |
C5 |
HC41 |
234.8 |
120.0 |
| C2 |
C4 |
C5 |
HC42 |
125.3 |
239.9 |
| C5 |
C4 |
C2 |
C1 |
242.4 |
180.0 |
| C5 |
C4 |
C2 |
C3 |
81.9 |
300.1 |
| C5 |
C4 |
C2 |
HC2 |
341.4 |
60.0 |
| HC41 |
C4 |
C5 |
HC42 |
250.5 |
120.0 |
| O6 |
C5 |
HC51 |
C4 |
238.2 |
120.0 |
| O6 |
C5 |
HC51 |
HC52 |
119.1 |
240.0 |
| C4 |
C5 |
HC51 |
HC52 |
240.9 |
120.0 |
| HC51 |
C5 |
C4 |
C2 |
255.1 |
300.0 |
| HC51 |
C5 |
C4 |
HC41 |
20.4 |
180.0 |
| HC51 |
C5 |
C4 |
HC42 |
129.9 |
60.1 |
| O6 |
C5 |
HC52 |
C4 |
121.8 |
239.9 |
| O6 |
C5 |
HC52 |
HC51 |
240.8 |
120.0 |
| C4 |
C5 |
HC52 |
HC51 |
119.0 |
240.1 |
| HC52 |
C5 |
C4 |
C2 |
145.7 |
59.9 |
| HC52 |
C5 |
C4 |
HC41 |
270.9 |
299.9 |
| HC52 |
C5 |
C4 |
HC42 |
20.4 |
180.0 |
| C2 |
C4 |
C5 |
HC51 |
255.1 |
300.0 |
| C2 |
C4 |
C5 |
HC52 |
145.7 |
59.9 |
| C5 |
C4 |
C2 |
HC41 |
125.3 |
240.0 |
| C5 |
C4 |
C2 |
HC42 |
234.7 |
120.1 |
| HC41 |
C4 |
C2 |
HC42 |
109.4 |
240.1 |
| C1 |
C2 |
C4 |
C3 |
160.5 |
240.0 |
| C1 |
C2 |
C4 |
HC2 |
261.0 |
120.0 |
| C4 |
C2 |
C1 |
HC11 |
180.0 |
180.0 |
| C4 |
C2 |
C1 |
HC12 |
305.3 |
300.0 |
| C4 |
C2 |
C1 |
HC13 |
54.7 |
60.0 |
| C3 |
C2 |
C4 |
HC2 |
100.5 |
240.0 |
| C4 |
C2 |
C3 |
HC31 |
179.9 |
300.0 |
| C4 |
C2 |
C3 |
HC32 |
305.2 |
59.9 |
| C4 |
C2 |
C3 |
HC33 |
54.8 |
179.9 |
| HC41 |
C4 |
C5 |
HC51 |
20.4 |
180.0 |
| HC41 |
C4 |
C5 |
HC52 |
270.9 |
299.9 |
| C5 |
C4 |
HC41 |
C2 |
230.0 |
120.0 |
| C5 |
C4 |
HC41 |
HC42 |
115.0 |
240.0 |
| C2 |
C4 |
HC41 |
HC42 |
245.0 |
120.0 |
| HC41 |
C4 |
C2 |
C1 |
117.1 |
300.0 |
| HC41 |
C4 |
C2 |
C3 |
316.6 |
60.0 |
| HC41 |
C4 |
C2 |
HC2 |
216.1 |
180.0 |
| HC42 |
C4 |
C5 |
HC51 |
129.9 |
60.1 |
| HC42 |
C4 |
C5 |
HC52 |
20.4 |
180.0 |
| C5 |
C4 |
HC42 |
C2 |
130.0 |
239.9 |
| C5 |
C4 |
HC42 |
HC41 |
245.0 |
120.0 |
| C2 |
C4 |
HC42 |
HC41 |
114.9 |
240.1 |
| HC42 |
C4 |
C2 |
C1 |
7.7 |
59.9 |
| HC42 |
C4 |
C2 |
C3 |
207.2 |
180.0 |
| HC42 |
C4 |
C2 |
HC2 |
106.7 |
299.9 |
| C1 |
C2 |
C4 |
HC41 |
117.1 |
300.0 |
| C1 |
C2 |
C4 |
HC42 |
7.7 |
59.9 |
| C4 |
C2 |
C1 |
C3 |
200.3 |
120.0 |
| C4 |
C2 |
C1 |
HC2 |
105.7 |
240.0 |
| C3 |
C2 |
C1 |
HC2 |
265.4 |
120.0 |
| C1 |
C2 |
C3 |
HC31 |
20.1 |
60.0 |
| C1 |
C2 |
C3 |
HC32 |
145.4 |
180.0 |
| C1 |
C2 |
C3 |
HC33 |
255.0 |
300.0 |
| HC11 |
C1 |
C2 |
HC12 |
234.8 |
240.0 |
| HC11 |
C1 |
C2 |
HC13 |
125.3 |
120.0 |
| HC12 |
C1 |
C2 |
HC13 |
250.6 |
240.0 |
| C3 |
C2 |
C4 |
HC41 |
316.6 |
60.0 |
| C3 |
C2 |
C4 |
HC42 |
207.2 |
180.0 |
| C4 |
C2 |
C3 |
C1 |
159.8 |
239.9 |
| C4 |
C2 |
C3 |
HC2 |
253.6 |
119.9 |
| C1 |
C2 |
C3 |
HC2 |
93.8 |
240.0 |
| C3 |
C2 |
C1 |
HC11 |
339.8 |
59.9 |
| C3 |
C2 |
C1 |
HC12 |
105.0 |
180.0 |
| C3 |
C2 |
C1 |
HC13 |
214.4 |
300.0 |
| HC31 |
C3 |
C2 |
HC32 |
234.7 |
240.0 |
| HC31 |
C3 |
C2 |
HC33 |
125.2 |
120.1 |
| HC32 |
C3 |
C2 |
HC33 |
250.4 |
240.0 |
| HC2 |
C2 |
C4 |
HC41 |
216.1 |
180.0 |
| HC2 |
C2 |
C4 |
HC42 |
106.7 |
299.9 |
| C4 |
C2 |
HC2 |
C1 |
240.8 |
120.0 |
| C4 |
C2 |
HC2 |
C3 |
119.1 |
240.0 |
| C1 |
C2 |
HC2 |
C3 |
238.4 |
120.0 |
| HC2 |
C2 |
C1 |
HC11 |
74.4 |
299.9 |
| HC2 |
C2 |
C1 |
HC12 |
199.6 |
60.0 |
| HC2 |
C2 |
C1 |
HC13 |
309.0 |
180.0 |
| HC2 |
C2 |
C3 |
HC31 |
286.3 |
180.1 |
| HC2 |
C2 |
C3 |
HC32 |
51.6 |
300.0 |
| HC2 |
C2 |
C3 |
HC33 |
161.1 |
60.0 |
| HC11 |
C1 |
C2 |
C3 |
339.8 |
59.9 |
| HC11 |
C1 |
C2 |
HC2 |
74.4 |
299.9 |
| C2 |
C1 |
HC11 |
HC12 |
125.3 |
120.0 |
| C2 |
C1 |
HC11 |
HC13 |
234.6 |
240.1 |
| HC12 |
C1 |
HC11 |
HC13 |
109.4 |
120.0 |
| HC12 |
C1 |
C2 |
C3 |
105.0 |
180.0 |
| HC12 |
C1 |
C2 |
HC2 |
199.6 |
60.0 |
| C2 |
C1 |
HC12 |
HC11 |
229.7 |
240.0 |
| C2 |
C1 |
HC12 |
HC13 |
114.9 |
120.0 |
| HC11 |
C1 |
HC12 |
HC13 |
245.2 |
240.0 |
| HC13 |
C1 |
C2 |
C3 |
214.4 |
300.0 |
| HC13 |
C1 |
C2 |
HC2 |
309.0 |
180.0 |
| C2 |
C1 |
HC13 |
HC11 |
130.3 |
120.0 |
| C2 |
C1 |
HC13 |
HC12 |
245.1 |
240.0 |
| HC11 |
C1 |
HC13 |
HC12 |
114.8 |
120.0 |
| HC31 |
C3 |
C2 |
HC2 |
286.3 |
180.1 |
| C2 |
C3 |
HC31 |
HC32 |
125.3 |
120.0 |
| C2 |
C3 |
HC31 |
HC33 |
234.8 |
239.9 |
| HC32 |
C3 |
HC31 |
HC33 |
109.5 |
119.9 |
| HC32 |
C3 |
C2 |
HC2 |
51.6 |
300.0 |
| C2 |
C3 |
HC32 |
HC31 |
230.1 |
240.0 |
| C2 |
C3 |
HC32 |
HC33 |
115.1 |
120.0 |
| HC31 |
C3 |
HC32 |
HC33 |
245.0 |
240.0 |
| HC33 |
C3 |
C2 |
HC2 |
161.1 |
60.0 |
| C2 |
C3 |
HC33 |
HC31 |
129.8 |
120.1 |
| C2 |
C3 |
HC33 |
HC32 |
244.9 |
240.0 |
| HC31 |
C3 |
HC33 |
HC32 |
115.1 |
119.9 |