PDB Chemical Component IPD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IPD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.534	1.530
C1	C6	1.538	1.531
C1	O1	1.462	1.429
C1	H1	1.099	1.091
C2	C3	1.542	1.530
C2	O2	1.451	1.429
C2	H2	1.099	1.090
C3	C4	1.540	1.530
C3	O3	1.425	1.430
C3	H3	1.100	1.090
C4	C5	1.539	1.529
C4	O4	1.442	1.429
C4	H4	1.100	1.090
C5	C6	1.541	1.530
C5	O5	1.448	1.429
C5	H5	1.100	1.090
C6	O6	1.424	1.429
C6	H6	1.099	1.090
P1	O1	1.566	1.610
P1	O7	1.465	1.567
P1	O8	1.486	1.566
P1	O9	1.488	1.567
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O5	HO5	0.950	0.968
O6	HO6	0.950	0.967

Bond Angles for IPD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	108.2	109.5
C2	C1	O1	107.1	109.5
C2	C1	H1	110.4	109.5
C1	C2	C3	108.4	109.5
C1	C2	O2	109.7	109.5
C1	C2	H2	108.9	109.5
C6	C1	O1	109.3	109.5
C6	C1	H1	110.3	109.4
C1	C6	C5	112.2	109.5
C1	C6	O6	108.7	109.5
C1	C6	H6	108.1	109.4
O1	C1	H1	111.4	109.5
C1	O1	P1	123.1	123.0
C3	C2	O2	110.9	109.5
C3	C2	H2	108.8	109.5
C2	C3	C4	110.5	109.5
C2	C3	O3	108.9	109.5
C2	C3	H3	108.9	109.5
O2	C2	H2	110.0	109.4
C2	O2	HO2	109.5	114.0
C4	C3	O3	108.9	109.5
C4	C3	H3	109.0	109.5
C3	C4	C5	109.7	109.5
C3	C4	O4	110.5	109.5
C3	C4	H4	108.5	109.4
O3	C3	H3	110.6	109.4
C3	O3	HO3	109.5	114.0
C5	C4	O4	109.6	109.5
C5	C4	H4	108.6	109.5
C4	C5	C6	109.0	109.5
C4	C5	O5	108.3	109.5
C4	C5	H5	109.6	109.5
O4	C4	H4	109.9	109.5
C4	O4	HO4	109.5	114.0
C6	C5	O5	109.4	109.4
C6	C5	H5	109.6	109.4
C5	C6	O6	110.0	109.5
C5	C6	H6	108.1	109.5
O5	C5	H5	110.9	109.5
C5	O5	HO5	109.5	114.0
O6	C6	H6	109.6	109.5
C6	O6	HO6	109.5	114.0
O1	P1	O7	109.1	109.5
O1	P1	O8	108.0	109.5
O1	P1	O9	106.5	109.4
O7	P1	O8	113.7	109.5
O7	P1	O9	113.8	109.4
O8	P1	O9	105.4	109.5

Torsion Angles for IPD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	O1	117.8	120.0
C6	C1	C2	H1	239.2	240.1
C2	C1	C6	C5	60.1	60.0
C2	C1	C6	O6	182.0	180.0
C2	C1	C6	H6	301.0	300.0
O1	C1	C2	H1	121.4	120.0
C2	C1	O1	P1	237.9	240.1
C3	C2	C1	O2	238.7	240.0
C3	C2	C1	H2	118.3	120.0
C1	C2	C3	C4	62.0	60.0
C1	C2	C3	O3	181.7	180.0
C1	C2	C3	H3	302.3	300.0
O2	C2	C1	H2	239.5	240.1
C1	C2	O2	HO2	180.0	180.0
C2	C1	C6	O1	243.6	239.9
C2	C1	C6	H1	120.8	120.0
C6	C1	C2	C3	299.4	300.0
C6	C1	C2	O2	60.7	60.0
C6	C1	C2	H2	181.1	180.0
O1	C1	C6	H1	237.2	240.0
C6	C1	O1	P1	120.8	120.0
C4	C5	C6	C1	302.2	300.0
C1	C6	C5	O5	183.9	180.0
C1	C6	C5	H5	62.1	60.0
C5	C6	C1	O6	238.1	240.0
C5	C6	C1	H6	119.1	120.0
O6	C6	C1	H6	241.0	240.0
C1	C6	O6	HO6	180.0	180.0
C2	C1	O1	C6	117.1	120.0
C2	C1	O1	H1	239.2	240.0
O1	C1	C2	C3	181.6	180.0
O1	C1	C2	O2	302.9	300.0
O1	C1	C2	H2	63.4	60.0
C6	C1	O1	H1	122.1	120.0
O1	C1	C6	C5	176.5	180.0
O1	C1	C6	O6	298.4	300.0
O1	C1	C6	H6	57.4	60.0
C1	O1	P1	O7	182.8	304.9
C1	O1	P1	O8	306.8	65.0
C1	O1	P1	O9	59.6	185.0
C2	C1	H1	C6	240.4	240.0
C2	C1	H1	O1	118.9	120.1
H1	C1	C2	C3	60.2	60.0
H1	C1	C2	O2	181.5	180.0
H1	C1	C2	H2	301.9	299.9
C6	C1	H1	O1	238.4	240.0
H1	C1	C6	C5	299.3	300.0
H1	C1	C6	O6	61.2	60.0
H1	C1	C6	H6	180.2	180.0
H1	C1	O1	P1	358.7	0.1
C3	C2	C1	C6	299.4	300.0
C3	C2	C1	O1	181.6	180.0
C3	C2	C1	H1	60.2	60.0
C1	C2	C3	O2	120.5	120.0
C1	C2	C3	H2	241.7	240.0
O2	C2	C3	H2	121.1	120.0
C3	C2	O2	HO2	299.7	300.0
C4	C3	C2	O3	240.4	240.0
C4	C3	C2	H3	119.7	120.0
C2	C3	C4	C5	300.0	300.0
C2	C3	C4	O4	179.0	180.0
C2	C3	C4	H4	58.5	60.0
O3	C3	C2	H3	239.3	240.0
C2	C3	O3	HO3	180.0	180.1
O2	C2	C1	C6	60.7	60.0
O2	C2	C1	O1	302.9	300.0
O2	C2	C1	H1	181.5	180.0
C1	C2	O2	C3	240.3	240.0
C1	C2	O2	H2	119.8	120.0
C3	C2	O2	H2	239.6	240.0
O2	C2	C3	C4	301.5	300.0
O2	C2	C3	O3	61.2	60.0
O2	C2	C3	H3	181.8	180.0
H2	C2	C1	C6	181.1	180.0
H2	C2	C1	O1	63.4	60.0
H2	C2	C1	H1	301.9	299.9
C1	C2	H2	C3	118.0	120.0
C1	C2	H2	O2	239.7	240.0
C3	C2	H2	O2	121.7	120.0
H2	C2	C3	C4	180.4	180.0
H2	C2	C3	O3	300.0	300.0
H2	C2	C3	H3	60.7	60.0
H2	C2	O2	HO2	60.2	60.0
C4	C3	C2	O2	301.5	300.0
C4	C3	C2	H2	180.4	180.0
C2	C3	C4	O3	119.6	120.0
C2	C3	C4	H3	240.3	240.0
O3	C3	C4	H3	120.7	120.0
C4	C3	O3	HO3	300.6	300.0
C5	C4	C3	O4	121.0	120.0
C5	C4	C3	H4	241.5	240.0
C3	C4	C5	C6	56.3	60.0
C3	C4	C5	O5	175.3	180.0
C3	C4	C5	H5	296.4	300.0
O4	C4	C3	H4	120.5	120.0
C3	C4	O4	HO4	180.0	180.0
O3	C3	C2	O2	61.2	60.0
O3	C3	C2	H2	300.0	300.0
C2	C3	O3	C4	239.4	240.0
C2	C3	O3	H3	119.7	120.0
C4	C3	O3	H3	240.3	240.0
O3	C3	C4	C5	180.4	180.0
O3	C3	C4	O4	59.4	60.0
O3	C3	C4	H4	298.9	300.0
H3	C3	C2	O2	181.8	180.0
H3	C3	C2	H2	60.7	60.0
C2	C3	H3	C4	120.6	120.0
C2	C3	H3	O3	240.3	240.0
C4	C3	H3	O3	119.7	120.0
H3	C3	C4	C5	59.7	60.0
H3	C3	C4	O4	298.7	300.0
H3	C3	C4	H4	178.2	180.0
H3	C3	O3	HO3	60.3	60.1
C1	C6	C5	C4	302.2	300.0
C5	C4	C3	O3	180.4	180.0
C5	C4	C3	H3	59.7	60.0
C3	C4	C5	O4	238.5	240.0
C3	C4	C5	H4	118.5	120.0
O4	C4	C5	H4	240.0	240.0
C5	C4	O4	HO4	59.0	60.0
C6	C5	C4	O5	241.0	240.0
C6	C5	C4	H5	119.9	120.0
C4	C5	C6	O6	181.0	180.0
C4	C5	C6	H6	61.3	60.0
O5	C5	C4	H5	238.9	240.0
C4	C5	O5	HO5	180.0	60.0
O4	C4	C3	O3	59.4	60.0
O4	C4	C3	H3	298.7	300.0
C3	C4	O4	C5	121.0	120.0
C3	C4	O4	H4	240.2	240.0
C5	C4	O4	H4	119.2	120.0
O4	C4	C5	C6	177.8	180.0
O4	C4	C5	O5	296.8	300.0
O4	C4	C5	H5	57.9	60.0
H4	C4	C3	O3	298.9	300.0
H4	C4	C3	H3	178.2	180.0
C3	C4	H4	C5	240.8	240.0
C3	C4	H4	O4	121.0	120.0
C5	C4	H4	O4	240.1	240.0
H4	C4	C5	C6	297.9	300.0
H4	C4	C5	O5	56.9	60.0
H4	C4	C5	H5	177.9	180.0
H4	C4	O4	HO4	299.7	300.0
C5	C6	C1	O1	176.5	180.0
C5	C6	C1	H1	299.3	300.0
C1	C6	C5	O6	121.2	120.0
C1	C6	C5	H6	240.9	240.0
C6	C5	C4	O4	177.8	180.0
C6	C5	C4	H4	297.9	300.0
C4	C5	C6	O5	118.3	120.0
C4	C5	C6	H5	240.1	240.0
O5	C5	C6	H5	121.8	120.0
C6	C5	O5	HO5	298.7	180.0
O6	C6	C5	H6	119.7	120.1
C5	C6	O6	HO6	303.2	300.0
O5	C5	C4	O4	296.8	300.0
O5	C5	C4	H4	56.9	60.0
C4	C5	O5	C6	241.3	240.0
C4	C5	O5	H5	120.3	120.1
C6	C5	O5	H5	239.0	240.1
O5	C5	C6	O6	62.8	60.0
O5	C5	C6	H6	303.1	300.0
H5	C5	C4	O4	57.9	60.0
H5	C5	C4	H4	177.9	180.0
C4	C5	H5	C6	119.6	120.0
C4	C5	H5	O5	240.5	239.9
C6	C5	H5	O5	120.9	119.9
H5	C5	C6	O6	301.0	300.1
H5	C5	C6	H6	181.3	180.0
H5	C5	O5	HO5	59.7	300.0
O6	C6	C1	O1	298.4	300.0
O6	C6	C1	H1	61.2	60.0
C1	C6	O6	C5	236.8	240.0
C1	C6	O6	H6	118.0	120.0
O6	C6	C5	O5	62.8	60.0
O6	C6	C5	H5	301.0	300.1
C5	C6	O6	H6	241.2	240.0
H6	C6	C1	O1	57.4	60.0
H6	C6	C1	H1	180.2	180.0
C1	C6	H6	C5	121.6	120.0
C1	C6	H6	O6	241.6	240.0
H6	C6	C5	O5	303.1	300.0
H6	C6	C5	H5	181.3	180.0
C5	C6	H6	O6	119.9	120.1
H6	C6	O6	HO6	61.9	60.1
P1	O1	C1	H1	358.7	0.1
O7	P1	O1	O8	236.0	240.0
O7	P1	O1	O9	123.2	119.9
O8	P1	O1	O9	247.2	240.0
O1	P1	O7	O8	120.6	120.0
O1	P1	O7	O9	241.3	240.1
O8	P1	O7	O9	120.7	120.0
O1	P1	O8	O7	238.8	240.0
O1	P1	O8	O9	113.5	120.0
O7	P1	O8	O9	234.7	240.0
O1	P1	O9	O7	120.2	119.9
O1	P1	O9	O8	245.4	240.0
O7	P1	O9	O8	125.2	120.0
HO2	O2	C2	H2	60.2	60.0
HO3	O3	C3	H3	60.3	60.1
HO4	O4	C4	H4	299.7	300.0
HO5	O5	C5	H5	59.7	300.0
HO6	O6	C6	H6	61.9	60.1