PDB Chemical Component IOP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for IOP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1'	O1	1.210	1.207
C1'	O2	1.301	1.342
C1'	C2'	1.524	1.507
O2	HO2	0.950	0.967
C2'	C3'	1.524	1.529
C2'	H2'1	1.115	1.089
C2'	H2'2	1.115	1.090
C3'	C3	1.487	1.506
C3'	H3'1	1.115	1.090
C3'	H3'2	1.115	1.089
N1	C2	1.375	1.369
N1	C7A	1.382	1.377
N1	HN1	1.019	0.970
C2	C3	1.366	1.342
C2	H2	1.102	1.079
C3	C3A	1.415	1.465
C3A	C4	1.387	1.396
C3A	C7A	1.399	1.407
C4	C5	1.366	1.367
C4	H4	1.103	1.080
C5	C6	1.386	1.388
C5	H5	1.103	1.080
C6	C7	1.383	1.377
C6	H6	1.103	1.080
C7	C7A	1.392	1.391
C7	H7	1.103	1.080

Bond Angles for IOP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1'	O2	124.1	120.0
O1	C1'	C2'	113.5	120.0
O2	C1'	C2'	122.3	120.0
C1'	O2	HO2	124.1	120.0
C1'	C2'	C3'	105.1	109.5
C1'	C2'	H2'1	113.9	109.5
C1'	C2'	H2'2	113.9	109.4
C3'	C2'	H2'1	113.8	109.5
C3'	C2'	H2'2	113.8	109.5
C2'	C3'	C3	108.5	109.5
C2'	C3'	H3'1	112.6	109.5
C2'	C3'	H3'2	112.6	109.5
H2'1	C2'	H2'2	96.6	109.5
C3	C3'	H3'1	112.6	109.4
C3	C3'	H3'2	112.6	109.5
C3'	C3	C2	128.7	126.5
C3'	C3	C3A	124.3	126.5
H3'1	C3'	H3'2	97.9	109.5
C2	N1	C7A	108.1	109.9
C2	N1	HN1	125.8	125.0
N1	C2	C3	109.8	109.9
N1	C2	H2	125.4	125.0
C7A	N1	HN1	126.1	125.1
N1	C7A	C3A	107.7	107.1
N1	C7A	C7	132.0	133.5
C3	C2	H2	124.8	125.1
C2	C3	C3A	106.9	107.0
C3	C3A	C4	132.6	134.0
C3	C3A	C7A	107.4	106.1
C4	C3A	C7A	120.0	119.9
C3A	C4	C5	119.7	119.8
C3A	C4	H4	120.9	120.1
C3A	C7A	C7	120.3	119.4
C5	C4	H4	119.3	120.1
C4	C5	C6	120.3	120.5
C4	C5	H5	119.1	119.7
C6	C5	H5	120.6	119.7
C5	C6	C7	121.4	120.7
C5	C6	H6	119.4	119.7
C7	C6	H6	119.3	119.7
C6	C7	C7A	118.3	119.8
C6	C7	H7	120.5	120.1
C7A	C7	H7	121.2	120.1

Torsion Angles for IOP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C1'	O1	C2'	178.0	180.0
O1	C1'	O2	HO2	180.0	360.0
O1	C1'	C2'	C3'	136.3	360.0
O1	C1'	C2'	H2'1	261.6	120.0
O1	C1'	C2'	H2'2	11.1	240.0
O1	C1'	O2	C2'	182.2	180.0
O2	C1'	C2'	C3'	318.3	180.0
O2	C1'	C2'	H2'1	83.6	300.0
O2	C1'	C2'	H2'2	193.1	60.0
O1	C1'	C2'	O2	178.0	180.0
C2'	C1'	O2	HO2	357.8	180.0
C3'	C2'	C1'	H2'1	234.7	240.0
C3'	C2'	C1'	H2'2	125.3	120.0
C1'	C2'	C3'	C3	295.9	180.0
C1'	C2'	C3'	H3'1	61.2	300.0
C1'	C2'	C3'	H3'2	170.7	60.0
H2'1	C2'	C1'	H2'2	250.5	240.0
HO2	O2	C1'	C2'	357.8	180.0
C1'	C2'	C3'	H2'1	125.3	120.0
C1'	C2'	C3'	H2'2	234.7	240.0
H2'1	C2'	C3'	H2'2	109.5	120.0
C3	C3'	C2'	H3'1	234.7	240.1
C3	C3'	C2'	H3'2	125.3	120.0
C2'	C3'	C3	C2	109.9	90.0
C2'	C3'	C3	C3A	291.7	269.7
H3'1	C3'	C2'	H3'2	250.6	239.9
C1'	C2'	H2'1	C3'	239.5	240.0
C1'	C2'	H2'1	H2'2	119.8	119.9
C3'	C2'	H2'1	H2'2	240.3	240.0
H2'1	C2'	C3'	C3	170.7	60.0
H2'1	C2'	C3'	H3'1	295.9	180.0
H2'1	C2'	C3'	H3'2	45.4	300.0
C1'	C2'	H2'2	C3'	120.5	120.0
C1'	C2'	H2'2	H2'1	240.2	240.0
C3'	C2'	H2'2	H2'1	119.7	120.0
H2'2	C2'	C3'	C3	61.2	300.0
H2'2	C2'	C3'	H3'1	186.5	59.9
H2'2	C2'	C3'	H3'2	295.9	180.0
C3	C3'	C2'	H2'1	170.7	60.0
C3	C3'	C2'	H2'2	61.2	300.0
C2'	C3'	C3	H3'1	125.3	120.0
C2'	C3'	C3	H3'2	234.8	240.0
H3'1	C3'	C3	H3'2	109.5	120.0
N1	C2	C3	C3'	180.8	179.9
C3'	C3	C2	H2	0.8	360.0
C2	C3	C3'	C3A	178.2	180.3
C3'	C3	C3A	C4	358.9	0.7
C3'	C3	C3A	C7A	178.8	179.9
H3'1	C3'	C2'	H2'1	295.9	180.0
H3'1	C3'	C2'	H2'2	186.5	59.9
C2'	C3'	H3'1	C3	237.0	240.0
C2'	C3'	H3'1	H3'2	118.5	120.1
C3	C3'	H3'1	H3'2	241.5	240.0
H3'1	C3'	C3	C2	344.6	330.0
H3'1	C3'	C3	C3A	166.4	149.7
H3'2	C3'	C2'	H2'1	45.4	300.0
H3'2	C3'	C2'	H2'2	295.9	180.0
C2'	C3'	H3'2	C3	123.0	120.0
C2'	C3'	H3'2	H3'1	241.5	239.9
C3	C3'	H3'2	H3'1	118.5	119.9
H3'2	C3'	C3	C2	235.1	210.0
H3'2	C3'	C3	C3A	57.0	29.7
C3'	C3	C2	N1	180.8	179.9
C7A	N1	C2	HN1	180.0	180.0
C2	N1	C7A	C3A	359.2	359.7
C2	N1	C7A	C7	179.0	180.0
C3	C2	N1	H2	180.0	180.0
N1	C2	C3	C3A	359.2	0.2
C2	N1	C7A	HN1	180.0	180.0
C7A	N1	C2	C3	1.0	0.0
C7A	N1	C2	H2	181.0	180.0
C3	C3A	C7A	N1	0.3	0.4
C4	C3A	C7A	N1	180.3	179.7
C3A	C7A	N1	C7	180.2	179.8
C6	C7	C7A	N1	179.2	180.0
N1	C7A	C7	H7	359.3	359.9
C2	N1	HN1	C7A	180.0	180.1
HN1	N1	C2	C3	181.1	180.0
HN1	N1	C2	H2	1.0	360.0
HN1	N1	C7A	C3A	179.1	179.8
HN1	N1	C7A	C7	358.9	0.0
C2	C3	C3'	H3'1	344.6	330.0
C2	C3	C3'	H3'2	235.1	210.0
C3'	C3	C2	C3A	181.6	179.8
C3	C2	N1	C7A	1.0	0.0
C3	C2	N1	HN1	181.1	180.0
N1	C2	C3	H2	180.0	180.0
C2	C3	C3A	C4	180.4	180.5
C2	C3	C3A	C7A	0.3	359.7
H2	C2	N1	C7A	181.0	180.0
H2	C2	N1	HN1	1.0	360.0
N1	C2	H2	C3	180.1	180.0
H2	C2	C3	C3A	179.2	180.2
C3A	C3	C3'	H3'1	166.4	149.7
C3A	C3	C3'	H3'2	57.0	29.7
C3'	C3	C3A	C2	178.5	180.2
N1	C7A	C3A	C3	0.3	0.4
C3A	C3	C2	H2	179.2	180.2
C4	C3A	C3	C7A	180.1	180.8
C3	C3A	C4	C5	180.5	179.6
C3	C3A	C4	H4	0.4	359.3
C3	C3A	C7A	C7	180.5	180.2
N1	C7A	C3A	C4	180.3	179.7
C3	C3A	C4	C7A	179.9	179.1
C4	C3A	C7A	C7	0.4	359.5
C5	C4	C3A	H4	180.0	180.3
C3A	C4	C5	C6	359.0	359.7
C3A	C4	C5	H5	179.0	179.7
C3A	C7A	N1	HN1	179.1	179.8
N1	C7A	C3A	C7	179.8	180.2
C3	C3A	C7A	C4	180.1	180.7
C7A	C3A	C4	C5	0.6	0.6
C7A	C3A	C4	H4	180.6	180.3
C6	C7	C7A	C3A	359.0	0.2
C3A	C7A	C7	H7	179.0	180.2
C5	C4	C3A	C7A	0.6	0.6
C3A	C4	C5	H4	180.0	179.7
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C7	0.4	360.0
C4	C5	C6	H6	180.3	180.0
H4	C4	C3A	C7A	180.6	180.3
C3A	C4	H4	C5	180.0	180.3
H4	C4	C5	C6	179.1	180.0
H4	C4	C5	H5	359.0	360.0
C6	C5	C4	H4	179.1	180.0
C4	C5	C6	H5	180.0	180.0
C7	C6	C5	H6	180.0	180.0
C5	C6	C7	C7A	0.6	0.0
C5	C6	C7	H7	180.6	180.1
H5	C5	C4	H4	359.0	360.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C7	180.4	180.0
H5	C5	C6	H6	0.3	0.0
N1	C7A	C7	C6	179.2	180.0
C3A	C7A	C7	C6	359.0	0.2
C7	C6	C5	H5	180.4	180.0
C5	C6	C7	H6	180.0	180.0
C7A	C7	C6	H7	180.1	180.0
H6	C6	C5	H5	0.3	0.0
C5	C6	H6	C7	180.0	180.0
H6	C6	C7	C7A	180.7	180.0
H6	C6	C7	H7	0.6	0.1
C7	C7A	N1	HN1	358.9	0.0
N1	C7A	C7	C3A	180.2	179.8
C7A	C7	C6	H6	180.7	180.0
C6	C7	C7A	H7	179.9	180.0
H7	C7	C6	H6	0.6	0.1
C6	C7	H7	C7A	180.1	180.0