PDB Chemical Component IOB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for IOB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CG |
CD2 |
1.418 |
1.382 |
| CG |
CD1 |
1.421 |
1.382 |
| CG |
CB |
1.522 |
1.508 |
| CD2 |
CE2 |
1.419 |
1.382 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CD1 |
CE1 |
1.428 |
1.382 |
| CD1 |
HD1 |
1.103 |
1.080 |
| CE2 |
CZ |
1.422 |
1.382 |
| CE2 |
HE2 |
1.103 |
1.080 |
| CE1 |
CZ |
1.422 |
1.383 |
| CE1 |
I |
2.136 |
2.094 |
| CZ |
HZ |
1.103 |
1.079 |
| O |
CB |
1.437 |
1.428 |
| O |
H |
0.950 |
0.967 |
| CB |
HB2 |
1.116 |
1.090 |
| CB |
HB1 |
1.116 |
1.090 |
Bond Angles for IOB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD2 |
CG |
CD1 |
119.2 |
120.0 |
| CD2 |
CG |
CB |
123.4 |
120.0 |
| CG |
CD2 |
CE2 |
121.2 |
120.0 |
| CG |
CD2 |
HD2 |
119.3 |
120.0 |
| CD1 |
CG |
CB |
117.4 |
120.0 |
| CG |
CD1 |
CE1 |
120.1 |
120.0 |
| CG |
CD1 |
HD1 |
119.7 |
120.0 |
| CG |
CB |
O |
121.7 |
109.5 |
| CG |
CB |
HB2 |
107.8 |
109.5 |
| CG |
CB |
HB1 |
107.9 |
109.4 |
| CE2 |
CD2 |
HD2 |
119.4 |
120.0 |
| CD2 |
CE2 |
CZ |
119.5 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.2 |
120.0 |
| CE1 |
CD1 |
HD1 |
120.2 |
120.0 |
| CD1 |
CE1 |
CZ |
120.1 |
120.0 |
| CD1 |
CE1 |
I |
119.7 |
120.0 |
| CZ |
CE2 |
HE2 |
120.3 |
120.0 |
| CE2 |
CZ |
CE1 |
119.9 |
120.0 |
| CE2 |
CZ |
HZ |
120.1 |
120.0 |
| CZ |
CE1 |
I |
120.2 |
120.0 |
| CE1 |
CZ |
HZ |
120.1 |
120.0 |
| CB |
O |
H |
121.7 |
106.8 |
| O |
CB |
HB2 |
107.9 |
109.5 |
| O |
CB |
HB1 |
107.8 |
109.5 |
| HB2 |
CB |
HB1 |
102.0 |
109.5 |
Torsion Angles for IOB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD1 |
CG |
CD2 |
CB |
179.3 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
359.9 |
359.5 |
| CD2 |
CG |
CD1 |
HD1 |
179.9 |
180.0 |
| CD2 |
CG |
CB |
O |
304.0 |
90.0 |
| CD2 |
CG |
CB |
HB2 |
69.3 |
330.0 |
| CD2 |
CG |
CB |
HB1 |
178.7 |
210.0 |
| CE2 |
CD2 |
CG |
HD2 |
180.1 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
0.1 |
0.0 |
| CG |
CD2 |
CE2 |
HE2 |
180.1 |
180.0 |
| CD2 |
CG |
CD1 |
CB |
180.6 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
0.0 |
0.2 |
| CD1 |
CG |
CD2 |
HD2 |
179.9 |
180.3 |
| CD1 |
CG |
CB |
O |
124.6 |
269.7 |
| CD1 |
CG |
CB |
HB2 |
249.9 |
149.7 |
| CD1 |
CG |
CB |
HB1 |
359.3 |
29.7 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
179.5 |
| CG |
CD1 |
CE1 |
CZ |
0.2 |
0.5 |
| CG |
CD1 |
CE1 |
I |
180.4 |
180.3 |
| CD2 |
CG |
CB |
CD1 |
179.3 |
180.3 |
| CB |
CG |
CD2 |
CE2 |
180.7 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
0.6 |
360.0 |
| CB |
CG |
CD1 |
CE1 |
179.2 |
179.8 |
| CB |
CG |
CD1 |
HD1 |
359.3 |
0.2 |
| CG |
CB |
O |
H |
180.0 |
179.9 |
| O |
CB |
CG |
HB2 |
234.7 |
120.0 |
| O |
CB |
CG |
HB1 |
125.3 |
240.0 |
| HB2 |
CB |
CG |
HB1 |
250.6 |
120.0 |
| CE2 |
CD2 |
CG |
CD1 |
0.0 |
0.2 |
| CE2 |
CD2 |
CG |
CB |
180.7 |
180.0 |
| CG |
CD2 |
CE2 |
HD2 |
179.9 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.9 |
360.0 |
| CD2 |
CE2 |
CZ |
HZ |
179.9 |
179.9 |
| HD2 |
CD2 |
CG |
CD1 |
179.9 |
180.3 |
| HD2 |
CD2 |
CG |
CB |
0.6 |
360.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.1 |
180.0 |
| HD2 |
CD2 |
CE2 |
CZ |
180.2 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.1 |
360.0 |
| CE1 |
CD1 |
CG |
CB |
179.2 |
179.8 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.5 |
| CE2 |
CZ |
CE1 |
CD1 |
360.0 |
359.7 |
| CZ |
CE1 |
CD1 |
I |
179.8 |
180.3 |
| CD1 |
CE1 |
CZ |
HZ |
180.0 |
179.8 |
| HD1 |
CD1 |
CG |
CB |
359.3 |
0.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
179.5 |
| HD1 |
CD1 |
CE1 |
CZ |
180.1 |
180.1 |
| HD1 |
CD1 |
CE1 |
I |
0.3 |
359.8 |
| CZ |
CE2 |
CD2 |
HD2 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
360.0 |
359.7 |
| CE2 |
CZ |
CE1 |
I |
179.7 |
180.0 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.1 |
360.0 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
CE1 |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
HZ |
359.9 |
359.9 |
| CZ |
CE1 |
CD1 |
HD1 |
180.1 |
180.1 |
| CD1 |
CE1 |
CZ |
I |
180.2 |
179.7 |
| CE1 |
CZ |
CE2 |
HE2 |
180.0 |
180.0 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
180.0 |
| I |
CE1 |
CD1 |
HD1 |
0.3 |
359.8 |
| CD1 |
CE1 |
I |
CZ |
179.8 |
180.3 |
| I |
CE1 |
CZ |
HZ |
359.7 |
0.1 |
| HZ |
CZ |
CE2 |
HE2 |
359.9 |
359.9 |
| CE2 |
CZ |
HZ |
CE1 |
180.0 |
180.0 |
| HZ |
CZ |
CE1 |
I |
359.7 |
0.1 |
| CG |
CB |
O |
HB2 |
125.3 |
240.0 |
| CG |
CB |
O |
HB1 |
234.7 |
120.0 |
| HB2 |
CB |
O |
HB1 |
109.4 |
240.0 |
| H |
O |
CB |
HB2 |
54.7 |
299.9 |
| H |
O |
CB |
HB1 |
305.3 |
60.0 |
| CG |
CB |
HB2 |
O |
226.9 |
120.0 |
| CG |
CB |
HB2 |
HB1 |
113.4 |
240.0 |
| HB2 |
CB |
O |
H |
54.7 |
299.9 |
| O |
CB |
HB2 |
HB1 |
246.6 |
120.1 |
| CG |
CB |
HB1 |
O |
133.2 |
240.0 |
| CG |
CB |
HB1 |
HB2 |
246.6 |
120.0 |
| HB1 |
CB |
O |
H |
305.3 |
60.0 |
| O |
CB |
HB1 |
HB2 |
113.5 |
240.0 |